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Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Prediction

arXiv 2106.06935 ↗First posted 13 Jun 2021cs.LGcited by 273

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Abstract (arXiv)

Link prediction is a very fundamental task on graphs. Inspired by traditional path-based methods, in this paper we propose a general and flexible representation learning framework based on paths for link prediction. Specifically, we define the representation of a pair of nodes as the generalized sum of all path representations, with each path representation as the generalized product of the edge representations in the path. Motivated by the Bellman-Ford algorithm for solving the shortest path problem, we show that the proposed path formulation can be efficiently solved by the generalized Bellman-Ford algorithm. To further improve the capacity of the path formulation, we propose the Neural Bellman-Ford Network (NBFNet), a general graph neural network framework that solves the path formulation with learned operators in the generalized Bellman-Ford algorithm. The NBFNet parameterizes the generalized Bellman-Ford algorithm with 3 neural components, namely INDICATOR, MESSAGE and AGGREGATE functions, which corresponds to the boundary condition, multiplication operator, and summation operator respectively. The NBFNet is very general, covers many traditional path-based methods, and can be applied to both homogeneous graphs and multi-relational graphs (e.g., knowledge graphs) in both transductive and inductive settings. Experiments on both homogeneous graphs and knowledge graphs show that the proposed NBFNet outperforms existing methods by a large margin in both transductive and inductive settings, achieving new state-of-the-art results.

Key facts. Cited by 273 papers in the map (data through 7 Oct 2026). Builds on 55 of its 87 references that are in the map. First posted on arXiv 13 Jun 2021.

Builds on

55 of 87 references.

References · 55

  1. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  2. 2017Graph Attention Networkscited by 8,854
  3. 2017Inductive Representation Learning on Large Graphscited by 6,284
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38 more
  1. 2017Deep Setscited by 1,394
  2. 2016Variational Graph Auto-Encoderscited by 1,373
  3. 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,099
  4. 2014Embedding Entities and Relations for Learning and Inference in Knowledge Basescited by 929
  5. 2016Complex Embeddings for Simple Link Predictioncited by 897
  6. 2019RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Spacecited by 893
  7. 2018Link Prediction Based on Graph Neural Networkscited by 829
  8. 2017Convolutional 2D Knowledge Graph Embeddingscited by 729
  9. 2015LINE: Large-scale Information Network Embeddingcited by 582
  10. 2020Principal Neighbourhood Aggregation for Graph Netscited by 477
  11. 2019Composition-based Multi-Relational Graph Convolutional Networkscited by 395
  12. 2021QA-GNN: Reasoning with Language Models and Knowledge Graphs for Question Answeringcited by 386
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  14. 2019PairNorm: Tackling Oversmoothing in GNNscited by 297
  15. 2017DeepPath: A Reinforcement Learning Method for Knowledge Graph Reasoningcited by 265
  16. 2015A Review of Relational Machine Learning for Knowledge Graphscited by 264
  17. 2019Inductive Relation Prediction by Subgraph Reasoningcited by 237
  18. 2021Identity-aware Graph Neural Networkscited by 197
  19. 2018SimplE Embedding for Link Prediction in Knowledge Graphscited by 195
  20. 2018Hyperspherical Variational Auto-Encoderscited by 188
  21. 2019DRUM: End-To-End Differentiable Rule Mining On Knowledge Graphscited by 173
  22. 2020Query2box: Reasoning over Knowledge Graphs in Vector Space using Box Embeddingscited by 169
  23. 2017Go for a Walk and Arrive at the Answer: Reasoning Over Paths in Knowledge Bases using Reinforcement Learningcited by 161
  24. 2019Learning Hierarchy-Aware Knowledge Graph Embeddings for Link Predictioncited by 133
  25. 2018Embedding Logical Queries on Knowledge Graphscited by 120
  26. 2020RNNLogic: Learning Logic Rules for Reasoning on Knowledge Graphscited by 117
  27. 2018Multi-Hop Knowledge Graph Reasoning with Reward Shapingcited by 102
  28. 2020PairRE: Knowledge Graph Embeddings via Paired Relation Vectorscited by 67
  29. 2020Relational Message Passing for Knowledge Graph Completioncited by 61
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  32. 2019Orthogonal Relation Transforms with Graph Context Modeling for Knowledge Graph Embeddingcited by 38
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  34. 2021Link Prediction with Persistent Homology: An Interactive Viewcited by 37
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  38. 2018Variational Knowledge Graph Reasoningcited by 27

50 most cited of 55 All 55 (JSON)

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 3; 2022: 34; 2023: 59; 2024: 73; 2025: 59; 2026: 45.

273 papers.

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  1. 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 239
  2. 2022A Survey of Knowledge Graph Reasoning on Graph Types: Static, Dynamic, and Multimodalcited by 106
  3. 2021Knowledge Graph Reasoning with Relational Digraphcited by 91
  4. 2024Position: Graph Foundation Models are Already Herecited by 84
  5. 2023Towards Foundation Models for Knowledge Graph Reasoningcited by 83
  6. 2022Graph Neural Networks for Link Prediction with Subgraph Sketchingcited by 81
  7. 2022Sequence-to-Sequence Knowledge Graph Completion and Question Answeringcited by 75
  8. 2021NodePiece: Compositional and Parameter-Efficient Representations of Large Knowledge Graphscited by 71
  9. 2023Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarkingcited by 69
  10. 2022A Survey on Graph Representation Learning Methodscited by 66
  11. 2023Neural Common Neighbor with Completion for Link Predictioncited by 64
  12. 2022Neural-Symbolic Models for Logical Queries on Knowledge Graphscited by 60
38 more
  1. 2022Graph Neural Networks are Dynamic Programmerscited by 55
  2. 2022Neighborhood-aware Scalable Temporal Network Representation Learningcited by 54
  3. 2025Position: Graph Learning Will Lose Relevance Due To Poor Benchmarkscited by 52
  4. 2023InGram: Inductive Knowledge Graph Embedding via Relation Graphscited by 50
  5. 2022A*Net: A Scalable Path-based Reasoning Approach for Knowledge Graphscited by 49
  6. 2023Demystifying Structural Disparity in Graph Neural Networks: Can One Size Fit All?cited by 41
  7. 2022Linkless Link Prediction via Relational Distillationcited by 39
  8. 2022OOD Link Prediction Generalization Capabilities of Message-Passing GNNs in Larger Test Graphscited by 38
  9. 2023Neural Graph Reasoning: Complex Logical Query Answering Meets Graph Databasescited by 35
  10. 2023A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphscited by 32
  11. 2023Revisiting Link Prediction: A Data Perspectivecited by 29
  12. 2022AdaProp: Learning Adaptive Propagation for Graph Neural Network based Knowledge Graph Reasoningcited by 28
  13. 2022Lifelong Embedding Learning and Transfer for Growing Knowledge Graphscited by 28
  14. 2022Weisfeiler and Leman Go Relationalcited by 28
  15. 2022Answering Complex Logical Queries on Knowledge Graphs via Query Computation Tree Optimizationcited by 28
  16. 2023Logical Message Passing Networks with One-hop Inference on Atomic Formulascited by 28
  17. 2022An Open Challenge for Inductive Link Prediction on Knowledge Graphscited by 26
  18. 2022Inductive Logical Query Answering in Knowledge Graphscited by 25
  19. 2023PaGE-Link: Path-based Graph Neural Network Explanation for Heterogeneous Link Predictioncited by 25
  20. 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
  21. 2022High-Order Pooling for Graph Neural Networks with Tensor Decompositioncited by 24
  22. 2021Cycle Representation Learning for Inductive Relation Predictioncited by 23
  23. 2023A Multi-Task Perspective for Link Prediction with New Relation Types and Nodescited by 23
  24. 2025TRIX: A More Expressive Model for Zero-shot Domain Transfer in Knowledge Graphscited by 23
  25. 2023Counterfactual Learning on Graphs: A Surveycited by 22
  26. 2024Understanding Reasoning Ability of Language Models From the Perspective of Reasoning Paths Aggregationcited by 22
  27. 2024A Survey on Hypergraph Neural Networks: An In-Depth and Step-By-Step Guidecited by 22
  28. 2025How Expressive are Knowledge Graph Foundation Models?cited by 22
  29. 2023Double Equivariance for Inductive Link Prediction for Both New Nodes and New Relation Typescited by 21
  30. 2022Geodesic Graph Neural Network for Efficient Graph Representation Learningcited by 19
  31. 2023Normalizing Flow-based Neural Process for Few-Shot Knowledge Graph Completioncited by 19
  32. 2024Hypergraph-based Multi-View Action Recognition using Event Camerascited by 19
  33. 2024ContextGNN: Beyond Two-Tower Recommendation Systemscited by 19
  34. 2022Few-shot Relational Reasoning via Connection Subgraph Pretrainingcited by 18
  35. 2023Pure Message Passing Can Estimate Common Neighbor for Link Predictioncited by 18
  36. 2024Efficient Neural Common Neighbor for Temporal Graph Link Predictioncited by 18
  37. 2023Toward Degree Bias in Embedding-Based Knowledge Graph Completioncited by 17
  38. 2023LPFormer: An Adaptive Graph Transformer for Link Predictioncited by 17

50 most cited of 273 All 273 (JSON)