mlsanityData to 7 Oct 2026

Towards Foundation Models for Knowledge Graph Reasoning

arXiv 2310.04562 ↗First posted 6 Oct 2023cs.CL cs.AIcited by 83

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Abstract (arXiv)

Foundation models in language and vision have the ability to run inference on any textual and visual inputs thanks to the transferable representations such as a vocabulary of tokens in language. Knowledge graphs (KGs) have different entity and relation vocabularies that generally do not overlap. The key challenge of designing foundation models on KGs is to learn such transferable representations that enable inference on any graph with arbitrary entity and relation vocabularies. In this work, we make a step towards such foundation models and present ULTRA, an approach for learning universal and transferable graph representations. ULTRA builds relational representations as a function conditioned on their interactions. Such a conditioning strategy allows a pre-trained ULTRA model to inductively generalize to any unseen KG with any relation vocabulary and to be fine-tuned on any graph. Conducting link prediction experiments on 57 different KGs, we find that the zero-shot inductive inference performance of a single pre-trained ULTRA model on unseen graphs of various sizes is often on par or better than strong baselines trained on specific graphs. Fine-tuning further boosts the performance.

Key facts. Cited by 83 papers in the map (data through 7 Oct 2026). Builds on 54 of its 69 references that are in the map. First posted on arXiv 6 Oct 2023.

Builds on

54 of 69 references.

References · 54

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  12. 2018Link Prediction Based on Graph Neural Networkscited by 829
38 more
  1. 2017Convolutional 2D Knowledge Graph Embeddingscited by 729
  2. 2019Composition-based Multi-Relational Graph Convolutional Networkscited by 395
  3. 2019KEPLER: A Unified Model for Knowledge Embedding and Pre-trained Language Representationcited by 356
  4. 2021Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Predictioncited by 273
  5. 2017DeepPath: A Reinforcement Learning Method for Knowledge Graph Reasoningcited by 265
  6. 2019Inductive Relation Prediction by Subgraph Reasoningcited by 237
  7. 2023On Over-Squashing in Message Passing Neural Networks: The Impact of Width, Depth, and Topologycited by 163
  8. 2020Labeling Trick: A Theory of Using Graph Neural Networks for Multi-Node Representation Learningcited by 148
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  10. 2017Knowledge Transfer for Out-of-Knowledge-Base Entities: A Graph Neural Network Approachcited by 102
  11. 2020CoDEx: A Comprehensive Knowledge Graph Completion Benchmarkcited by 102
  12. 2023PRODIGY: Enabling In-context Learning Over Graphscited by 97
  13. 2021Knowledge Graph Reasoning with Relational Digraphcited by 91
  14. 2022Graph Neural Networks for Link Prediction with Subgraph Sketchingcited by 81
  15. 2019Meta Relational Learning for Few-Shot Link Prediction in Knowledge Graphscited by 73
  16. 2021NodePiece: Compositional and Parameter-Efficient Representations of Large Knowledge Graphscited by 71
  17. 2020Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Frameworkcited by 70
  18. 2019Few-Shot Knowledge Graph Completioncited by 63
  19. 2019Commonsense Knowledge Base Completion with Structural and Semantic Contextcited by 61
  20. 2020Inductive Entity Representations from Text via Link Predictioncited by 61
  21. 2022Neural-Symbolic Models for Logical Queries on Knowledge Graphscited by 60
  22. 2023InGram: Inductive Knowledge Graph Embedding via Relation Graphscited by 50
  23. 2022A*Net: A Scalable Path-based Reasoning Approach for Knowledge Graphscited by 49
  24. 2022TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discoverycited by 45
  25. 2022OOD Link Prediction Generalization Capabilities of Message-Passing GNNs in Larger Test Graphscited by 38
  26. 2021Relation Prediction as an Auxiliary Training Objective for Improving Multi-Relational Graph Representationscited by 37
  27. 2018Improving Knowledge Graph Embedding Using Simple Constraintscited by 36
  28. 2023A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphscited by 32
  29. 2022Relational Message Passing for Fully Inductive Knowledge Graph Completioncited by 29
  30. 2022AdaProp: Learning Adaptive Propagation for Graph Neural Network based Knowledge Graph Reasoningcited by 28
  31. 2020Dynamic Anticipation and Completion for Multi-Hop Reasoning over Sparse Knowledge Graphcited by 26
  32. 2022An Open Challenge for Inductive Link Prediction on Knowledge Graphscited by 26
  33. 2023Towards Predicting Equilibrium Distributions for Molecular Systems with Deep Learningcited by 26
  34. 2022Inductive Logical Query Answering in Knowledge Graphscited by 25
  35. 2023A Multi-Task Perspective for Link Prediction with New Relation Types and Nodescited by 23
  36. 2021BiQUE: Biquaternionic Embeddings of Knowledge Graphscited by 19
  37. 2022Saga: A Platform for Continuous Construction and Serving of Knowledge At Scalecited by 18
  38. 2022Few-shot Relational Reasoning via Connection Subgraph Pretrainingcited by 18

50 most cited of 54 All 54 (JSON)

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2023: 3; 2024: 25; 2025: 28; 2026: 27.

83 papers.

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  1. 2024GFT: Graph Foundation Model with Transferable Tree Vocabularycited by 82
  2. 2023Large Language Models can Learn Rulescited by 66
  3. 2024Demystifying Chains, Trees, and Graphs of Thoughtscited by 63
  4. 2024GOFA: A Generative One-For-All Model for Joint Graph Language Modelingcited by 56
  5. 2024Text-space Graph Foundation Models: Comprehensive Benchmarks and New Insightscited by 44
  6. 2025GFM-RAG: Graph Foundation Model for Retrieval Augmented Generationcited by 40
  7. 2024On the Scalability of GNNs for Molecular Graphscited by 36
  8. 2024Fully-inductive Node Classification on Arbitrary Graphscited by 36
  9. 2024Graph Machine Learning in the Era of Large Language Models (LLMs)cited by 33
  10. 2025Relational Transformer: Toward Zero-Shot Foundation Models for Relational Datacited by 32
  11. 2023A Benchmark to Understand the Role of Knowledge Graphs on Large Language Model's Accuracy for Question Answering on Enterprise SQL Databasescited by 25
  12. 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
38 more
  1. 2025TRIX: A More Expressive Model for Zero-shot Domain Transfer in Knowledge Graphscited by 23
  2. 2024Spatio-Spectral Graph Neural Networkscited by 17
  3. 2025Equivariance Everywhere All At Once: A Recipe for Graph Foundation Modelscited by 17
  4. 2024GraphFM: A generalist graph transformer that learns transferable representations across diverse domainscited by 14
  5. 2024Towards Neural Scaling Laws on Graphscited by 13
  6. 2024LLM as Prompter: Low-resource Inductive Reasoning on Arbitrary Knowledge Graphscited by 13
  7. 2024A Foundation Model for Zero-shot Logical Query Reasoningcited by 13
  8. 2024Towards Graph Foundation Models for Personalizationcited by 12
  9. 2023Bring Your Own KG: Self-Supervised Program Synthesis for Zero-Shot KGQAcited by 11
  10. 2024Link Prediction with Relational Hypergraphscited by 9
  11. 2025Flock: A Knowledge Graph Foundation Model via Learning on Random Walkscited by 8
  12. 2024Is Complex Query Answering Really Complex?cited by 7
  13. 2025HYPER: A Foundation Model for Inductive Link Prediction with Knowledge Hypergraphscited by 7
  14. 2024Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphscited by 6
  15. 2025Output Length Effect on DeepSeek-R1's Safety in Forced Thinkingcited by 6
  16. 2024Towards Foundation Models on Graphs: An Analysis on Cross-Dataset Transfer of Pretrained GNNscited by 5
  17. 2025Position: Foundation Models for Tabular Data within Systemic Contexts Need Groundingcited by 5
  18. 2025Learning Efficient and Generalizable Graph Retriever for Knowledge-Graph Question Answeringcited by 5
  19. 2026Billion-Scale Graph Foundation Modelscited by 5
  20. 2024Do Neural Scaling Laws Exist on Graph Self-Supervised Learning?cited by 4
  21. 2024Towards Graph Foundation Models: A Study on the Generalization of Positional and Structural Encodingscited by 4
  22. 2025Retrieval-Augmented Generation of Ontologies from Relational Databasescited by 4
  23. 2026OpenRFM: Dissecting Relational In-Context Learningcited by 4
  24. 2025Towards Text-free Graph Foundation Models: Rethinking Multi-Domain Graph Contrastive Learningcited by 3
  25. 2025Efficient Knowledge Probing of Large Language Models by Adapting Pre-trained Embeddingscited by 3
  26. 2025LoSemB: Logic-Guided Semantic Bridging for Inductive Tool Retrievalcited by 3
  27. 2025Perovskite-LLM: Knowledge-Enhanced Large Language Models for Perovskite Solar Cell Researchcited by 2
  28. 2025Toward a Graph Foundation Model: Pre-Training Transformers With Random Walkscited by 2
  29. 2025DuetGraph: Coarse-to-Fine Knowledge Graph Reasoning with Dual-Pathway Global-Local Fusioncited by 2
  30. 2026Modality-free Graph In-context Alignmentcited by 2
  31. 2026Bridging Input Feature Spaces Towards Graph Foundation Modelscited by 2
  32. 2026RelAgent: LLM Agents as Data Scientists for Relational Learningcited by 2
  33. 2026KGPFN: Unlocking the Potential of Knowledge Graph Foundation Model via In-Context Learningcited by 2
  34. 2024Towards Better Benchmark Datasets for Inductive Knowledge Graph Completioncited by 1
  35. 2025Designing a reliable lateral movement detector using a graph foundation modelcited by 1
  36. 2025CHAINSFORMER: Numerical Reasoning on Knowledge Graphs from a Chain Perspectivecited by 1
  37. 2025Towards Foundation Model on Temporal Knowledge Graph Reasoningcited by 1
  38. 2025GraphUniverse: Synthetic Graph Generation for Evaluating Inductive Generalizationcited by 1

50 most cited of 83 All 83 (JSON)