A Survey on Hypergraph Neural Networks: An In-Depth and Step-By-Step Guide
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Abstract (arXiv)
Higher-order interactions (HOIs) are ubiquitous in real-world complex systems and applications. Investigation of deep learning for HOIs, thus, has become a valuable agenda for the data mining and machine learning communities. As networks of HOIs are expressed mathematically as hypergraphs, hypergraph neural networks (HNNs) have emerged as a powerful tool for representation learning on hypergraphs. Given the emerging trend, we present the first survey dedicated to HNNs, with an in-depth and step-by-step guide. Broadly, the present survey overviews HNN architectures, training strategies, and applications. First, we break existing HNNs down into four design components: (i) input features, (ii) input structures, (iii) message-passing schemes, and (iv) training strategies. Second, we examine how HNNs address and learn HOIs with each of their components. Third, we overview the recent applications of HNNs in recommendation, bioinformatics and medical science, time series analysis, and computer vision. Lastly, we conclude with a discussion on limitations and future directions.
Key facts. Cited by 22 papers in the map (data through 7 Oct 2026). Builds on 77 of its 160 references that are in the map. First posted on arXiv 1 Apr 2024.
Builds on
77 of 160 references.
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50 most cited of 77 All 77 (JSON)
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Citing papers per year: 2024: 2; 2025: 9; 2026: 11.
22 papers.
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- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedycited by 13
- 2025Recent Advances in Hypergraph Neural Networkscited by 7
- 2025DHG-Bench: A Comprehensive Benchmark for Deep Hypergraph Learningcited by 5
- 2025SoftHGNN: Soft Hypergraph Neural Networks for General Visual Recognitioncited by 4
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Surveycited by 2
- 2026Heterophily-Agnostic Hypergraph Neural Networks with Riemannian Local Exchangercited by 2
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approachcited by 2
- 2025Evolving Skeletons: Motion Dynamics in Action Recognitioncited by 1
- 2025Learning to Flow from Generative Pretext Tasks for Neural Architecture Encodingcited by 1
- 2025Parameter-Free Hypergraph Neural Network for Few-Shot Node Classificationcited by 1
- 2026SphUnc: Hyperspherical Uncertainty Decomposition and Causal Identification via Information Geometrycited by 1
- 2025Enhancing the Utility of Higher-Order Information in Relational Learningcited by 0
10 more
- 2025How Particle System Theory Enhances Hypergraph Message Passingcited by 0
- 2025Identifying Group Anchors in Real-World Group Interactions Under Label Scarcitycited by 0
- 2026Counterfactual Explanations for Hypergraph Neural Networkscited by 0
- 2026Towards Solving Polynomial-Objective Integer Programming with Hypergraph Neural Networkscited by 0
- 2026Hypergraph Neural Networks Accelerate MUS Enumerationcited by 0
- 2026Hypergraph as Languagecited by 0
- 2026Hypergraph Neural Stochastic Diffusion: An SDE Framework for Uncertainty Estimationcited by 0
- 2026MobileSAM2: Lightweight Segment Anything for Spatial Intelligencecited by 0
- 2026Unsupervised Multi-Scale Gromov-Wasserstein Hypergraph Alignmentcited by 0
- 2026AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networkscited by 0
- 2026AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networks27 Sep 2026
- 2026Unsupervised Multi-Scale Gromov-Wasserstein Hypergraph Alignment30 Aug 2026
- 2026MobileSAM2: Lightweight Segment Anything for Spatial Intelligence14 Jul 2026
- 2026Hypergraph Neural Stochastic Diffusion: An SDE Framework for Uncertainty Estimation8 Jul 2026
- 2026Hypergraph as Language21 May 2026
- 2026Hypergraph Neural Networks Accelerate MUS Enumeration10 Apr 2026
- 2026Towards Solving Polynomial-Objective Integer Programming with Hypergraph Neural Networks16 Mar 2026
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approach16 Mar 2026
- 2026SphUnc: Hyperspherical Uncertainty Decomposition and Causal Identification via Information Geometry1 Mar 2026
- 2026Heterophily-Agnostic Hypergraph Neural Networks with Riemannian Local Exchanger28 Feb 2026
- 2026Counterfactual Explanations for Hypergraph Neural Networks4 Feb 2026
- 2025Parameter-Free Hypergraph Neural Network for Few-Shot Node Classification24 Oct 2025
10 more
- 2025Learning to Flow from Generative Pretext Tasks for Neural Architecture Encoding21 Oct 2025
- 2025Identifying Group Anchors in Real-World Group Interactions Under Label Scarcity25 Sep 2025
- 2025DHG-Bench: A Comprehensive Benchmark for Deep Hypergraph Learning17 Aug 2025
- 2025How Particle System Theory Enhances Hypergraph Message Passing24 May 2025
- 2025SoftHGNN: Soft Hypergraph Neural Networks for General Visual Recognition21 May 2025
- 2025Recent Advances in Hypergraph Neural Networks11 Mar 2025
- 2025Enhancing the Utility of Higher-Order Information in Relational Learning13 Feb 2025
- 2025Evolving Skeletons: Motion Dynamics in Action Recognition5 Jan 2025
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Survey28 Nov 2024
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedy27 Oct 2024
- 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedycited by 13
- 2025Recent Advances in Hypergraph Neural Networkscited by 7
- 2025DHG-Bench: A Comprehensive Benchmark for Deep Hypergraph Learningcited by 5
- 2025SoftHGNN: Soft Hypergraph Neural Networks for General Visual Recognitioncited by 4
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Surveycited by 2
- 2026Heterophily-Agnostic Hypergraph Neural Networks with Riemannian Local Exchangercited by 2
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approachcited by 2
- 2025Evolving Skeletons: Motion Dynamics in Action Recognitioncited by 1
- 2025Learning to Flow from Generative Pretext Tasks for Neural Architecture Encodingcited by 1
- 2025Parameter-Free Hypergraph Neural Network for Few-Shot Node Classificationcited by 1
- 2026SphUnc: Hyperspherical Uncertainty Decomposition and Causal Identification via Information Geometrycited by 1
- 2025Enhancing the Utility of Higher-Order Information in Relational Learningcited by 0
12 most cited of 22 All 22 (JSON)
- 2026AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networks27 Sep 2026
- 2026Unsupervised Multi-Scale Gromov-Wasserstein Hypergraph Alignment30 Aug 2026
- 2026MobileSAM2: Lightweight Segment Anything for Spatial Intelligence14 Jul 2026
- 2026Hypergraph Neural Stochastic Diffusion: An SDE Framework for Uncertainty Estimation8 Jul 2026
- 2026Hypergraph as Language21 May 2026
- 2026Hypergraph Neural Networks Accelerate MUS Enumeration10 Apr 2026
- 2026Towards Solving Polynomial-Objective Integer Programming with Hypergraph Neural Networks16 Mar 2026
- 2026Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approach16 Mar 2026
- 2026SphUnc: Hyperspherical Uncertainty Decomposition and Causal Identification via Information Geometry1 Mar 2026
- 2026Heterophily-Agnostic Hypergraph Neural Networks with Riemannian Local Exchanger28 Feb 2026
- 2026Counterfactual Explanations for Hypergraph Neural Networks4 Feb 2026
- 2025Parameter-Free Hypergraph Neural Network for Few-Shot Node Classification24 Oct 2025
12 newest of 22 All 22 (JSON)