Inductive Relation Prediction by Subgraph Reasoning
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Abstract (arXiv)
The dominant paradigm for relation prediction in knowledge graphs involves learning and operating on latent representations (i.e., embeddings) of entities and relations. However, these embedding-based methods do not explicitly capture the compositional logical rules underlying the knowledge graph, and they are limited to the transductive setting, where the full set of entities must be known during training. Here, we propose a graph neural network based relation prediction framework, GraIL, that reasons over local subgraph structures and has a strong inductive bias to learn entity-independent relational semantics. Unlike embedding-based models, GraIL is naturally inductive and can generalize to unseen entities and graphs after training. We provide theoretical proof and strong empirical evidence that GraIL can represent a useful subset of first-order logic and show that GraIL outperforms existing rule-induction baselines in the inductive setting. We also demonstrate significant gains obtained by ensembling GraIL with various knowledge graph embedding methods in the transductive setting, highlighting the complementary inductive bias of our method.
Key facts. Cited by 237 papers in the map (data through 7 Oct 2026). First posted on arXiv 16 Nov 2019.
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Citing papers per year: 2021: 25; 2022: 51; 2023: 63; 2024: 45; 2025: 30; 2026: 23.
237 papers.
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- 2021Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Predictioncited by 273
- 2022Learning on Large-scale Text-attributed Graphs via Variational Inferencecited by 153
- 2022A Survey of Knowledge Graph Reasoning on Graph Types: Static, Dynamic, and Multimodalcited by 106
- 2022Equivariant and Stable Positional Encoding for More Powerful Graph Neural Networkscited by 94
- 2021Knowledge Graph Reasoning with Relational Digraphcited by 91
- 2022SimKGC: Simple Contrastive Knowledge Graph Completion with Pre-trained Language Modelscited by 90
- 2023Towards Foundation Models for Knowledge Graph Reasoningcited by 83
- 2021Size-Invariant Graph Representations for Graph Classification Extrapolationscited by 82
- 2021NodePiece: Compositional and Parameter-Efficient Representations of Large Knowledge Graphscited by 71
- 2023Large Language Models can Learn Rulescited by 66
- 2022Neural-Symbolic Models for Logical Queries on Knowledge Graphscited by 60
- 2021Neuro-Symbolic Artificial Intelligence: Current Trendscited by 54
38 more
- 2023InGram: Inductive Knowledge Graph Embedding via Relation Graphscited by 50
- 2022A*Net: A Scalable Path-based Reasoning Approach for Knowledge Graphscited by 49
- 2021Topology-Aware Correlations Between Relations for Inductive Link Prediction in Knowledge Graphscited by 47
- 2021OntoZSL: Ontology-enhanced Zero-shot Learningcited by 45
- 2022Knowledge Graph Contrastive Learning Based on Relation-Symmetrical Structurecited by 43
- 2021A Survey on Neural-symbolic Learning Systemscited by 39
- 2021Link Prediction with Persistent Homology: An Interactive Viewcited by 37
- 2023Neural Graph Reasoning: Complex Logical Query Answering Meets Graph Databasescited by 35
- 2022Towards Data-and Knowledge-Driven Artificial Intelligence: A Survey on Neuro-Symbolic Computingcited by 34
- 2022Language Models as Inductive Reasonerscited by 32
- 2023A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphscited by 32
- 2021Meta-Knowledge Transfer for Inductive Knowledge Graph Embeddingcited by 31
- 2022Knowledge Base Question Answering by Case-based Reasoning over Subgraphscited by 31
- 2022Relational Message Passing for Fully Inductive Knowledge Graph Completioncited by 29
- 2023Logic-induced Diagnostic Reasoning for Semi-supervised Semantic Segmentationcited by 29
- 2022Algorithm and System Co-design for Efficient Subgraph-based Graph Representation Learningcited by 28
- 2022AdaProp: Learning Adaptive Propagation for Graph Neural Network based Knowledge Graph Reasoningcited by 28
- 2022Lifelong Embedding Learning and Transfer for Growing Knowledge Graphscited by 28
- 2022Weisfeiler and Leman Go Relationalcited by 28
- 2021Inductive Relation Prediction by BERTcited by 27
- 2021DISCOS: Bridging the Gap between Discourse Knowledge and Commonsense Knowledgecited by 26
- 2022An Open Challenge for Inductive Link Prediction on Knowledge Graphscited by 26
- 2022Subgraph Neighboring Relations Infomax for Inductive Link Prediction on Knowledge Graphscited by 26
- 2022Inductive Logical Query Answering in Knowledge Graphscited by 25
- 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
- 2023BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphscited by 24
- 2023Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Networkcited by 24
- 2021Cycle Representation Learning for Inductive Relation Predictioncited by 23
- 2021Zero-shot and Few-shot Learning with Knowledge Graphs: A Comprehensive Surveycited by 23
- 2023A Multi-Task Perspective for Link Prediction with New Relation Types and Nodescited by 23
- 2025TRIX: A More Expressive Model for Zero-shot Domain Transfer in Knowledge Graphscited by 23
- 2021Graph Transformer Networks: Learning Meta-path Graphs to Improve GNNscited by 22
- 2025How Expressive are Knowledge Graph Foundation Models?cited by 22
- 2021Improving Inductive Link Prediction Using Hyper-Relational Factscited by 21
- 2023Double Equivariance for Inductive Link Prediction for Both New Nodes and New Relation Typescited by 21
- 2022Geodesic Graph Neural Network for Efficient Graph Representation Learningcited by 19
- 2024ContextGNN: Beyond Two-Tower Recommendation Systemscited by 19
- 2022Few-shot Relational Reasoning via Connection Subgraph Pretrainingcited by 18
50 most cited of 237 All 237 (JSON)
- 2026Exactness at Inference: A Representational Criterion for Out-of-Distribution Generalization21 Sep 2026
- 2026Reification as a Transferable Vocabulary: Zero-Shot Link Prediction with Vanilla GNNs10 Sep 2026
- 2026PAGR: Proof-Carrying Algebraic-Geometric Retrieval: A Quiver-, Provenance-, and Sheaf-Theoretic Framework for Grounded LLM Retrieval5 Sep 2026
- 2026PEARL: Path-Entity Aligned Relational Learning with Contextual Subgraphs for Inductive Knowledge Graph Completion2 Sep 2026
- 2026Structure-Internalized Rule Language Model for Faithful Knowledge Graph Reasoning18 Aug 2026
- 2026FITTER: Vocabulary-Agnostic Cross-Domain Inference on Temporal Knowledge Graphs11 Aug 2026
- 2026Neural Message Passing on Structural Interaction Graphs for Fully-Inductive Graph Neural Networks9 Aug 2026
- 2026MolBioKG: Grounding Out-of-Graph Molecules in Biomedical Knowledge Graphs via Multi-Resolution Structural Anchoring7 Aug 2026
- 2026Art Beyond Semantics: Sheaf-Informed Contrastive Learning for Multi-Relational Representations15 Jul 2026
- 2026GRATE: Temporal Extensions for Inductive KG Foundation Models via Gated Rotary Attention11 Jul 2026
- 2026Half a Link can Be Enough to Predict a Whole Link: Understanding Generalization in Knowledge Graph Foundation Models16 Jun 2026
- 2026Model Graph Inductive Learning for Knowledge Graph Completion15 Jun 2026
38 more
- 2026Q-GNN: Query-Conditioned Graph Neural Networks with Type Awareness for Knowledge Graph Completion4 Jun 2026
- 2026Boosting Knowledge Graph Foundation Models via Enhanced Negative Sampling26 May 2026
- 2026A2QTGN: Adaptive Amplitude Quantum-Integrated Temporal Graph Network for Dynamic Link Prediction21 May 2026
- 2026KGPFN: Unlocking the Potential of Knowledge Graph Foundation Model via In-Context Learning14 May 2026
- 2026Knowledge Graphs Meet Graph Neural Networks: A Comprehensive Survey12 May 2026
- 2026AdaTKG: Adaptive Memory for Temporal Knowledge Graph Reasoning8 May 2026
- 2026Graphlets as Building Blocks for Structural Vocabulary in Knowledge Graph Foundation Models7 May 2026
- 2026Neural-Symbolic Logic Query Answering in Non-Euclidean Space25 Feb 2026
- 2026Every Little Helps: Building Knowledge Graph Foundation Model with Fine-grained Transferable Multi-modal Tokens11 Feb 2026
- 2026THOR: Inductive Link Prediction over Hyper-Relational Knowledge Graphs5 Feb 2026
- 2026ROG: Retrieval-Augmented LLM Reasoning for Complex First-Order Queries over Knowledge Graphs2 Feb 2026
- 2025Geometric Structural Knowledge Graph Foundation Model28 Dec 2025
- 2025Enhancing Logical Expressiveness in Graph Neural Networks via Path-Neighbor Aggregation11 Nov 2025
- 2025Sound Logical Explanations for Mean Aggregation Graph Neural Networks27 Oct 2025
- 2025Inductive Transfer Learning for Graph-Based Recommenders26 Oct 2025
- 2025Knowledge Reasoning Language Model: Unifying Knowledge and Language for Inductive Knowledge Graph Reasoning15 Oct 2025
- 2025Flock: A Knowledge Graph Foundation Model via Learning on Random Walks1 Oct 2025
- 2025SLogic: Subgraph-Informed Logical Rule Learning for Knowledge Graph Completion30 Sep 2025
- 2025Type-Less yet Type-Aware Inductive Link Prediction with Pretrained Language Models30 Sep 2025
- 2025Enhancing Large Language Model for Knowledge Graph Completion via Structure-Aware Alignment-Tuning1 Sep 2025
- 2025Logical Expressivity and Explanations for Monotonic GNNs with Scoring Functions14 Aug 2025
- 2025GLIDR: Graph-Like Inductive Logic Programming with Differentiable Reasoning8 Aug 2025
- 2025Mixture of Length and Pruning Experts for Knowledge Graphs Reasoning28 Jul 2025
- 2025Improving Subgraph Matching by Combining Algorithms and Graph Neural Networks27 Jul 2025
- 2025Rule Learning for Knowledge Graph Reasoning under Agnostic Distribution Shift7 Jul 2025
- 2025Understanding Generalization in Node and Link Prediction1 Jul 2025
- 2025Flow-Modulated Scoring for Semantic-Aware Knowledge Graph Completion29 Jun 2025
- 2025HYPER: A Foundation Model for Inductive Link Prediction with Knowledge Hypergraphs14 Jun 2025
- 2025Towards Foundation Model on Temporal Knowledge Graph Reasoning4 Jun 2025
- 2025Beyond Completion: A Foundation Model for General Knowledge Graph Reasoning28 May 2025
- 2025SEMMA: A Semantic Aware Knowledge Graph Foundation Model26 May 2025
- 2025GraphOracle: Efficient Fully-Inductive Knowledge Graph Reasoning via Relation-Dependency Graphs16 May 2025
- 2025Transfer Learning for Temporal Link Prediction15 Apr 2025
- 2025Weight-of-Thought Reasoning: Exploring Neural Network Weights for Enhanced LLM Reasoning14 Apr 2025
- 2025FamilyTool: A Multi-hop Personalized Tool Use Benchmark9 Apr 2025
- 2025A Study on Neuro-Symbolic Artificial Intelligence: Healthcare Perspectives23 Mar 2025
- 2025TRIX: A More Expressive Model for Zero-shot Domain Transfer in Knowledge Graphs26 Feb 2025
- 2025How Expressive are Knowledge Graph Foundation Models?18 Feb 2025
50 newest of 237 All 237 (JSON)
- 2022Neural-Symbolic Models for Logical Queries on Knowledge Graphscited by 60
- 2023Neural Graph Reasoning: Complex Logical Query Answering Meets Graph Databasescited by 35
- 2022Language Models as Inductive Reasonerscited by 32
- 2022Weisfeiler and Leman Go Relationalcited by 28
- 2022Type-aware Embeddings for Multi-Hop Reasoning over Knowledge Graphscited by 13
- 2022TwiRGCN: Temporally Weighted Graph Convolution for Question Answering over Temporal Knowledge Graphscited by 10
- 2024LLM-Powered Explanations: Unraveling Recommendations Through Subgraph Reasoningcited by 10
- 2024Logical Reasoning with Relation Network for Inductive Knowledge Graph Completioncited by 6
- 2024KnowFormer: Revisiting Transformers for Knowledge Graph Reasoningcited by 5
- 2023Query Structure Modeling for Inductive Logical Reasoning Over Knowledge Graphscited by 3
- 2024Walk Wisely on Graph: Knowledge Graph Reasoning with Dual Agents via Efficient Guidance-Explorationcited by 2
- 2025Weight-of-Thought Reasoning: Exploring Neural Network Weights for Enhanced LLM Reasoningcited by 2
12 most cited of 16 All 16 (JSON)
- 2026Structure-Internalized Rule Language Model for Faithful Knowledge Graph Reasoning18 Aug 2026
- 2026ROG: Retrieval-Augmented LLM Reasoning for Complex First-Order Queries over Knowledge Graphs2 Feb 2026
- 2025Knowledge Reasoning Language Model: Unifying Knowledge and Language for Inductive Knowledge Graph Reasoning15 Oct 2025
- 2025Weight-of-Thought Reasoning: Exploring Neural Network Weights for Enhanced LLM Reasoning14 Apr 2025
- 2024KnowFormer: Revisiting Transformers for Knowledge Graph Reasoning19 Sep 2024
- 2024Walk Wisely on Graph: Knowledge Graph Reasoning with Dual Agents via Efficient Guidance-Exploration3 Aug 2024
- 2024LLM-Powered Explanations: Unraveling Recommendations Through Subgraph Reasoning22 Jun 2024
- 2024Logical Reasoning with Relation Network for Inductive Knowledge Graph Completion3 Jun 2024
- 2024Deja vu: Contrastive Historical Modeling with Prefix-tuning for Temporal Knowledge Graph Reasoning25 Mar 2024
- 2023Query Structure Modeling for Inductive Logical Reasoning Over Knowledge Graphs23 May 2023
- 2023Neural Graph Reasoning: Complex Logical Query Answering Meets Graph Databases26 Mar 2023
- 2022Language Models as Inductive Reasoners21 Dec 2022
12 newest of 16 All 16 (JSON)
- 2025FamilyTool: A Multi-hop Personalized Tool Use Benchmarkcited by 5
- 2025FamilyTool: A Multi-hop Personalized Tool Use Benchmark9 Apr 2025
- 2024Sub-graph Based Diffusion Model for Link Predictioncited by 0
- 2024Sub-graph Based Diffusion Model for Link Prediction13 Sep 2024
- 2021Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Predictioncited by 273
- 2022Learning on Large-scale Text-attributed Graphs via Variational Inferencecited by 153
- 2022A Survey of Knowledge Graph Reasoning on Graph Types: Static, Dynamic, and Multimodalcited by 106
- 2022Equivariant and Stable Positional Encoding for More Powerful Graph Neural Networkscited by 94
- 2021Knowledge Graph Reasoning with Relational Digraphcited by 91
- 2022SimKGC: Simple Contrastive Knowledge Graph Completion with Pre-trained Language Modelscited by 90
- 2023Towards Foundation Models for Knowledge Graph Reasoningcited by 83
- 2021Size-Invariant Graph Representations for Graph Classification Extrapolationscited by 82
- 2021NodePiece: Compositional and Parameter-Efficient Representations of Large Knowledge Graphscited by 71
- 2023Large Language Models can Learn Rulescited by 66
- 2021Neuro-Symbolic Artificial Intelligence: Current Trendscited by 54
- 2023InGram: Inductive Knowledge Graph Embedding via Relation Graphscited by 50
12 most cited of 216 All 216 (JSON)
- 2026Exactness at Inference: A Representational Criterion for Out-of-Distribution Generalization21 Sep 2026
- 2026Reification as a Transferable Vocabulary: Zero-Shot Link Prediction with Vanilla GNNs10 Sep 2026
- 2026PEARL: Path-Entity Aligned Relational Learning with Contextual Subgraphs for Inductive Knowledge Graph Completion2 Sep 2026
- 2026FITTER: Vocabulary-Agnostic Cross-Domain Inference on Temporal Knowledge Graphs11 Aug 2026
- 2026Neural Message Passing on Structural Interaction Graphs for Fully-Inductive Graph Neural Networks9 Aug 2026
- 2026MolBioKG: Grounding Out-of-Graph Molecules in Biomedical Knowledge Graphs via Multi-Resolution Structural Anchoring7 Aug 2026
- 2026Art Beyond Semantics: Sheaf-Informed Contrastive Learning for Multi-Relational Representations15 Jul 2026
- 2026GRATE: Temporal Extensions for Inductive KG Foundation Models via Gated Rotary Attention11 Jul 2026
- 2026Half a Link can Be Enough to Predict a Whole Link: Understanding Generalization in Knowledge Graph Foundation Models16 Jun 2026
- 2026Model Graph Inductive Learning for Knowledge Graph Completion15 Jun 2026
- 2026Q-GNN: Query-Conditioned Graph Neural Networks with Type Awareness for Knowledge Graph Completion4 Jun 2026
- 2026Boosting Knowledge Graph Foundation Models via Enhanced Negative Sampling26 May 2026
12 newest of 216 All 216 (JSON)