Spatial Implicit Neural Representations for Global-Scale Species Mapping
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Abstract (arXiv)
Estimating the geographical range of a species from sparse observations is a challenging and important geospatial prediction problem. Given a set of locations where a species has been observed, the goal is to build a model to predict whether the species is present or absent at any location. This problem has a long history in ecology, but traditional methods struggle to take advantage of emerging large-scale crowdsourced datasets which can include tens of millions of records for hundreds of thousands of species. In this work, we use Spatial Implicit Neural Representations (SINRs) to jointly estimate the geographical range of 47k species simultaneously. We find that our approach scales gracefully, making increasingly better predictions as we increase the number of species and the amount of data per species when training. To make this problem accessible to machine learning researchers, we provide four new benchmarks that measure different aspects of species range estimation and spatial representation learning. Using these benchmarks, we demonstrate that noisy and biased crowdsourced data can be combined with implicit neural representations to approximate expert-developed range maps for many species.
Key facts. Cited by 57 papers in the map (data through 7 Oct 2026). Builds on 21 of its 64 references that are in the map. First posted on arXiv 5 Jun 2023.
Builds on
21 of 64 references.
References · 21
- 2020A Simple Framework for Contrastive Learning of Visual Representationscited by 11,979
- 2016Xception: Deep Learning with Depthwise Separable Convolutionscited by 2,320
- 2020Fourier Features Let Networks Learn High Frequency Functions in Low Dimensional Domainscited by 2,170
- 2019Scene Representation Networks: Continuous 3D-Structure-Aware Neural Scene Representationscited by 864
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- 2021Beyond Periodicity: Towards a Unifying Framework for Activations in Coordinate-MLPscited by 134
- 2019Presence-Only Geographical Priors for Fine-Grained Image Classificationcited by 109
- 2020Multi-Scale Representation Learning for Spatial Feature Distributions using Grid Cellscited by 88
- 2020A Generalizable and Accessible Approach to Machine Learning with Global Satellite Imagerycited by 87
- 2021Multi-Label Learning from Single Positive Labelscited by 81
- 2019Geo-Aware Networks for Fine-Grained Recognitioncited by 44
- 2015Improving Image Classification with Location Contextcited by 33
9 more
- 2022Acknowledging the Unknown for Multi-label Learning with Single Positive Labelscited by 24
- 2021Species Distribution Modeling for Machine Learning Practitioners: A Reviewcited by 21
- 2016Deep Multi-Species Embeddingcited by 20
- 2022Spatial Consistency Loss for Training Multi-Label Classifiers from Single-Label Annotationscited by 17
- 2022Trading Positional Complexity vs. Deepness in Coordinate Networkscited by 16
- 2023Bird Distribution Modelling using Remote Sensing and Citizen Science datacited by 8
- 2018Bias Reduction via End-to-End Shift Learning: Application to Citizen Sciencecited by 6
- 2017Multi-Entity Dependence Learning with Rich Context via Conditional Variational Auto-encodercited by 5
- 2023Understanding Label Bias in Single Positive Multi-Label Learningcited by 3
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Citing papers per year: 2023: 4; 2024: 13; 2025: 26; 2026: 14.
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- 2023SatCLIP: Global, General-Purpose Location Embeddings with Satellite Imagerycited by 148
- 2023Geographic Location Encoding with Spherical Harmonics and Sinusoidal Representation Networkscited by 61
- 2024TaxaBind: A Unified Embedding Space for Ecological Applicationscited by 33
- 2024TorchSpatial: A Location Encoding Framework and Benchmark for Spatial Representation Learningcited by 29
- 2025RANGE: Retrieval Augmented Neural Fields for Multi-Resolution Geo-Embeddingscited by 18
- 2025The iNaturalist Sounds Datasetcited by 17
- 2023Active Learning-Based Species Range Estimationcited by 13
- 2024WildSAT: Learning Satellite Image Representations from Wildlife Observationscited by 13
- 2024Combining Observational Data and Language for Species Range Estimationcited by 12
- 2024On the selection and effectiveness of pseudo-absences for species distribution modeling with deep learningcited by 10
- 2025Measuring the Intrinsic Dimension of Earth Representationscited by 10
- 2025GAIR: Location-Aware Self-Supervised Contrastive Pre-Training with Geo-Aligned Implicit Representationscited by 9
38 more
- 2025LocDiff: Identifying Locations on Earth by Diffusing in the Hilbert Spacecited by 6
- 2025SSL4Eco: A Global Seasonal Dataset for Geospatial Foundation Models in Ecologycited by 5
- 2025RainShift: A Benchmark for Precipitation Downscaling Across Geographiescited by 5
- 2023LD-SDM: Language-Driven Hierarchical Species Distribution Modelingcited by 4
- 2024Generating Binary Species Range Mapscited by 4
- 2025WeedNet: A Foundation Model-Based Global-to-Local AI Approach for Real-Time Weed Species Identification and Classificationcited by 4
- 2025MoRA: Mobility as the Backbone for Geospatial Representation Learning at Scalecited by 4
- 2024Imbalance-aware Presence-only Loss Function for Species Distribution Modelingcited by 3
- 2024Probing the Information Theoretical Roots of Spatial Dependence Measurescited by 3
- 2024Multi-Scale and Multimodal Species Distribution Modelingcited by 3
- 2025Feedforward Few-shot Species Range Estimationcited by 3
- 2025MaskSDM with Shapley values to improve flexibility, robustness, and explainability in species distribution modelingcited by 3
- 2025ARC: Anchored Representation Clouds for High-Resolution INR Classificationcited by 3
- 2025iNatAg: Multi-Class Classification Models Enabled by a Large-Scale Benchmark Dataset with 4.7M Images of 2,959 Crop and Weed Speciescited by 3
- 2026Localized, High-resolution Geographic Representations with Slepian Functionscited by 3
- 2024MiTREE: Multi-input Transformer Ecoregion Encoder for Species Distribution Modellingcited by 2
- 2026SENDAI: A Hierarchical Sparse-measurement, EfficieNt Data AssImilation Frameworkcited by 2
- 2026MetaPerch: Learning from metadata for bioacoustics foundation modelscited by 2
- 2024Hybrid Spatial Representations for Species Distribution Modelingcited by 1
- 2025Mapping biodiversity at very-high resolution in Europecited by 1
- 2025ZooplanktonBench: A Geo-Aware Zooplankton Recognition and Classification Dataset from Marine Observationscited by 1
- 2025CISO: Species Distribution Modeling Conditioned on Incomplete Species Observationscited by 1
- 2025Merlin L48 Spectrogram Datasetcited by 1
- 2025ProM3E: Probabilistic Masked MultiModal Embedding Model for Ecologycited by 1
- 2025On Global Applicability and Location Transferability of Generative Deep Learning Models for Precipitation Downscalingcited by 1
- 2025SuperF: Neural Implicit Fields for Multi-Image Super-Resolutioncited by 1
- 2026LabelKAN -- Kolmogorov-Arnold Networks for Inter-Label Learning: Avian Community Learningcited by 1
- 2026What's in an Earth Embedding? An Explainability Analysis of Location Encoderscited by 1
- 2026Tessellating The Earthcited by 1
- 2024Spatial Clustering of Citizen Science Data Improves Downstream Species Distribution Modelscited by 0
- 2024Applying the maximum entropy principle to neural networks enhances multi-species distribution modelscited by 0
- 2025Heterogeneous graph neural networks for species distribution modelingcited by 0
- 2025Efficient Mixture of Geographical Species for On Device Wildlife Monitoringcited by 0
- 2025CrypticBio: A Large Multimodal Dataset for Visually Confusing Biodiversitycited by 0
- 2025Investigating Different Geo Priors for Image Classificationcited by 0
- 2025BATIS: Bayesian Approaches for Targeted Improvement of Species Distribution Modelscited by 0
- 2025GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variablescited by 0
- 2026A Geolocation-Aware Multimodal Approach for Ecological Predictioncited by 0
50 most cited of 57 All 57 (JSON)
- 2026Planetary Feature Fields are Scalable Earth Representations29 Sep 2026
- 2026SAGE: A sampling-aware global evaluation benchmark for species distribution modeling25 Sep 2026
- 2026Chronosphere: Space-Time Tessellation of Local Climate Experts18 Sep 2026
- 2026Earth Embeddings4 Aug 2026
- 2026MetaPerch: Learning from metadata for bioacoustics foundation models15 Jul 2026
- 2026Tessellating The Earth25 Jun 2026
- 2026What's in an Earth Embedding? An Explainability Analysis of Location Encoders23 Jun 2026
- 2026STELLAR: Spatio-Temporal Environmental Learning with Latent Alignment and Refinement for Long-Tailed Species Distribution Modeling7 Jun 2026
- 2026RealBirdID: Benchmarking Bird Species Identification in the Era of MLLMs27 Mar 2026
- 2026TerraDiT: Point-Conditioned Diffusion Transformer for Satellite Image Synthesis2 Mar 2026
- 2026Localized, High-resolution Geographic Representations with Slepian Functions30 Jan 2026
- 2026SENDAI: A Hierarchical Sparse-measurement, EfficieNt Data AssImilation Framework29 Jan 2026
38 more
- 2026LabelKAN -- Kolmogorov-Arnold Networks for Inter-Label Learning: Avian Community Learning23 Jan 2026
- 2026A Geolocation-Aware Multimodal Approach for Ecological Prediction13 Jan 2026
- 2025SuperF: Neural Implicit Fields for Multi-Image Super-Resolution9 Dec 2025
- 2025On Global Applicability and Location Transferability of Generative Deep Learning Models for Precipitation Downscaling1 Dec 2025
- 2025GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variables16 Nov 2025
- 2025ProM3E: Probabilistic Masked MultiModal Embedding Model for Ecology4 Nov 2025
- 2025Measuring the Intrinsic Dimension of Earth Representations3 Nov 2025
- 2025Merlin L48 Spectrogram Dataset31 Oct 2025
- 2025BATIS: Bayesian Approaches for Targeted Improvement of Species Distribution Models22 Oct 2025
- 2025Investigating Different Geo Priors for Image Classification21 Aug 2025
- 2025CISO: Species Distribution Modeling Conditioned on Incomplete Species Observations8 Aug 2025
- 2025RainShift: A Benchmark for Precipitation Downscaling Across Geographies7 Jul 2025
- 2025MoRA: Mobility as the Backbone for Geospatial Representation Learning at Scale2 Jun 2025
- 2025The iNaturalist Sounds Dataset31 May 2025
- 2025WeedNet: A Foundation Model-Based Global-to-Local AI Approach for Real-Time Weed Species Identification and Classification25 May 2025
- 2025ZooplanktonBench: A Geo-Aware Zooplankton Recognition and Classification Dataset from Marine Observations24 May 2025
- 2025CrypticBio: A Large Multimodal Dataset for Visually Confusing Biodiversity16 May 2025
- 2025SSL4Eco: A Global Seasonal Dataset for Geospatial Foundation Models in Ecology25 Apr 2025
- 2025Efficient Mixture of Geographical Species for On Device Wildlife Monitoring11 Apr 2025
- 2025Mapping biodiversity at very-high resolution in Europe7 Apr 2025
- 2025iNatAg: Multi-Class Classification Models Enabled by a Large-Scale Benchmark Dataset with 4.7M Images of 2,959 Crop and Weed Species25 Mar 2025
- 2025LocDiff: Identifying Locations on Earth by Diffusing in the Hilbert Space23 Mar 2025
- 2025GAIR: Location-Aware Self-Supervised Contrastive Pre-Training with Geo-Aligned Implicit Representations20 Mar 2025
- 2025ARC: Anchored Representation Clouds for High-Resolution INR Classification19 Mar 2025
- 2025MaskSDM with Shapley values to improve flexibility, robustness, and explainability in species distribution modeling17 Mar 2025
- 2025Heterogeneous graph neural networks for species distribution modeling14 Mar 2025
- 2025RANGE: Retrieval Augmented Neural Fields for Multi-Resolution Geo-Embeddings27 Feb 2025
- 2025Feedforward Few-shot Species Range Estimation20 Feb 2025
- 2024Applying the maximum entropy principle to neural networks enhances multi-species distribution models26 Dec 2024
- 2024MiTREE: Multi-input Transformer Ecoregion Encoder for Species Distribution Modelling25 Dec 2024
- 2024Spatial Clustering of Citizen Science Data Improves Downstream Species Distribution Models20 Dec 2024
- 2024WildSAT: Learning Satellite Image Representations from Wildlife Observations19 Dec 2024
- 2024Multi-Scale and Multimodal Species Distribution Modeling6 Nov 2024
- 2024TaxaBind: A Unified Embedding Space for Ecological Applications1 Nov 2024
- 2024Hybrid Spatial Representations for Species Distribution Modeling14 Oct 2024
- 2024Combining Observational Data and Language for Species Range Estimation14 Oct 2024
- 2024Generating Binary Species Range Maps28 Aug 2024
- 2024TorchSpatial: A Location Encoding Framework and Benchmark for Spatial Representation Learning21 Jun 2024
50 newest of 57 All 57 (JSON)
- 2023SatCLIP: Global, General-Purpose Location Embeddings with Satellite Imagerycited by 148
- 2023Geographic Location Encoding with Spherical Harmonics and Sinusoidal Representation Networkscited by 61
- 2024TaxaBind: A Unified Embedding Space for Ecological Applicationscited by 33
- 2024TorchSpatial: A Location Encoding Framework and Benchmark for Spatial Representation Learningcited by 29
- 2025RANGE: Retrieval Augmented Neural Fields for Multi-Resolution Geo-Embeddingscited by 18
- 2025The iNaturalist Sounds Datasetcited by 17
- 2023Active Learning-Based Species Range Estimationcited by 13
- 2024WildSAT: Learning Satellite Image Representations from Wildlife Observationscited by 13
- 2024Combining Observational Data and Language for Species Range Estimationcited by 12
- 2024On the selection and effectiveness of pseudo-absences for species distribution modeling with deep learningcited by 10
- 2025Measuring the Intrinsic Dimension of Earth Representationscited by 10
- 2025GAIR: Location-Aware Self-Supervised Contrastive Pre-Training with Geo-Aligned Implicit Representationscited by 9
12 most cited of 55 All 55 (JSON)
- 2026Planetary Feature Fields are Scalable Earth Representations29 Sep 2026
- 2026SAGE: A sampling-aware global evaluation benchmark for species distribution modeling25 Sep 2026
- 2026Chronosphere: Space-Time Tessellation of Local Climate Experts18 Sep 2026
- 2026Earth Embeddings4 Aug 2026
- 2026MetaPerch: Learning from metadata for bioacoustics foundation models15 Jul 2026
- 2026Tessellating The Earth25 Jun 2026
- 2026What's in an Earth Embedding? An Explainability Analysis of Location Encoders23 Jun 2026
- 2026STELLAR: Spatio-Temporal Environmental Learning with Latent Alignment and Refinement for Long-Tailed Species Distribution Modeling7 Jun 2026
- 2026RealBirdID: Benchmarking Bird Species Identification in the Era of MLLMs27 Mar 2026
- 2026Localized, High-resolution Geographic Representations with Slepian Functions30 Jan 2026
- 2026SENDAI: A Hierarchical Sparse-measurement, EfficieNt Data AssImilation Framework29 Jan 2026
- 2026LabelKAN -- Kolmogorov-Arnold Networks for Inter-Label Learning: Avian Community Learning23 Jan 2026
12 newest of 55 All 55 (JSON)