mlsanityData to 14 Oct 2026

Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphs

arXiv 2410.12609 ↗First posted 16 Oct 2024cs.LG cs.AIcited by 6

Not on the map. Why?

Abstract (arXiv)

Inspired by the success of large language models, there is a trend toward developing graph foundation models to conduct diverse downstream tasks in various domains. However, current models often require extra fine-tuning to apply their learned structural and semantic representations to new graphs, which limits their versatility. Recent breakthroughs in zero-shot inductive reasoning on knowledge graphs (KGs), offer us a new perspective on extending KG reasoning to general graph applications. In this paper, we introduce SCR, a unified graph reasoning framework designed to train on knowledge graphs and effectively generalize across a wide range of graph tasks and domains. We begin by designing the task-specific KG structures to establish a unified topology for different task formats. Then we propose semantic-conditioned message passing, a novel mechanism addressing the inherent semantic isolation in traditional KG reasoning, by jointly modeling structural and semantic invariance patterns in graph representations. To demonstrate the effectiveness, we evaluate the inductive reasoning capability of SCR using 38 diverse graph datasets, covering node-level, link-level, and graph-level tasks across multiple domains. Our results show substantial performance gains over existing foundation models and supervised baselines, highlighting the efficacy and adaptability of our approach.

Key facts. Cited by 6 papers in the map (data through 14 Oct 2026). Builds on 54 of its 88 references that are in the map. First posted on arXiv 16 Oct 2024.

Builds on

54 of 88 references.

References · 54

  1. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
  2. 2017Graph Attention Networkscited by 8,923
  3. 2017Inductive Representation Learning on Large Graphscited by 6,320
  4. 2013Efficient Estimation of Word Representations in Vector Spacecited by 4,375
  5. 2019DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lightercited by 4,307
  6. 2017Modeling Relational Data with Graph Convolutional Networkscited by 1,694
  7. 2019Simplifying Graph Convolutional Networkscited by 1,477
  8. 2020MiniLM: Deep Self-Attention Distillation for Task-Agnostic Compression of Pre-Trained Transformerscited by 1,463
  9. 2020MPNet: Masked and Permuted Pre-training for Language Understandingcited by 981
  10. 2014Embedding Entities and Relations for Learning and Inference in Knowledge Basescited by 932
  11. 2019RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Spacecited by 898
  12. 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 826
38 more
  1. 2017Convolutional 2D Knowledge Graph Embeddingscited by 730
  2. 2020Principal Neighbourhood Aggregation for Graph Netscited by 478
  3. 2019Composition-based Multi-Relational Graph Convolutional Networkscited by 396
  4. 2021Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Predictioncited by 275
  5. 2017DeepPath: A Reinforcement Learning Method for Knowledge Graph Reasoningcited by 266
  6. 2022Long Range Graph Benchmarkcited by 263
  7. 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 243
  8. 2019Inductive Relation Prediction by Subgraph Reasoningcited by 239
  9. 2020Low-Dimensional Hyperbolic Knowledge Graph Embeddingscited by 195
  10. 2019DRUM: End-To-End Differentiable Rule Mining On Knowledge Graphscited by 175
  11. 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 167
  12. 2020Labeling Trick: A Theory of Using Graph Neural Networks for Multi-Node Representation Learningcited by 149
  13. 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 148
  14. 2020CoDEx: A Comprehensive Knowledge Graph Completion Benchmarkcited by 102
  15. 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
  16. 2023PRODIGY: Enabling In-context Learning Over Graphscited by 98
  17. 2021Knowledge Graph Reasoning with Relational Digraphcited by 92
  18. 2023Towards Foundation Models for Knowledge Graph Reasoningcited by 86
  19. 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 85
  20. 2024OpenGraph: Towards Open Graph Foundation Modelscited by 78
  21. 2021NodePiece: Compositional and Parameter-Efficient Representations of Large Knowledge Graphscited by 72
  22. 2013A Semantic Matching Energy Function for Learning with Multi-relational Datacited by 61
  23. 2024AnyGraph: Graph Foundation Model in the Wildcited by 53
  24. 2023InGram: Inductive Knowledge Graph Embedding via Relation Graphscited by 52
  25. 2022A*Net: A Scalable Path-based Reasoning Approach for Knowledge Graphscited by 49
  26. 2021Topology-Aware Correlations Between Relations for Inductive Link Prediction in Knowledge Graphscited by 48
  27. 2023Virtual Node Tuning for Few-shot Node Classificationcited by 46
  28. 2023A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphscited by 32
  29. 2022Relational Message Passing for Fully Inductive Knowledge Graph Completioncited by 30
  30. 2024ProG: A Graph Prompt Learning Benchmarkcited by 29
  31. 2022AdaProp: Learning Adaptive Propagation for Graph Neural Network based Knowledge Graph Reasoningcited by 28
  32. 2023A Multi-Task Perspective for Link Prediction with New Relation Types and Nodescited by 24
  33. 2021Cycle Representation Learning for Inductive Relation Predictioncited by 23
  34. 2020Inductive Learning on Commonsense Knowledge Graph Completioncited by 22
  35. 2022FAITH: Few-Shot Graph Classification with Hierarchical Task Graphscited by 22
  36. 2024LLM as Prompter: Low-resource Inductive Reasoning on Arbitrary Knowledge Graphscited by 13
  37. 2022RAILD: Towards Leveraging Relation Features for Inductive Link Prediction In Knowledge Graphscited by 12
  38. 2023ULTRA-DP: Unifying Graph Pre-training with Multi-task Graph Dual Promptcited by 12

50 most cited of 54 All 54 (JSON)

Built on by

Cited by year (2026 to 14 Oct)

Citing papers per year: 2024: 1; 2025: 1; 2026: 4.

6 papers.

Similar, not cited

Close in wording, no citation either way

  1. 2025Graph-R1: Incentivizing the Zero-Shot Graph Learning Capability in LLMs via Explicit Reasoning
  2. 2025Beyond Completion: A Foundation Model for General Knowledge Graph Reasoning
  3. 2024Graph-constrained Reasoning: Faithful Reasoning on Knowledge Graphs with Large Language Models
  4. 2026GraphDancer: Training LLMs to Explore and Reason over Graphs via Two-Stage Curriculum Post-Training
  5. 2026GraphARC: A Comprehensive Benchmark for Graph-Based Abstract Reasoning
  6. 2026GraphReAct: Reasoning and Acting for Multi-step Graph Inference
  7. 2023Talk like a Graph: Encoding Graphs for Large Language Models
  8. 2024One Subgraph for All: Efficient Reasoning on Opening Subgraphs for Inductive Knowledge Graph Completion