mlsanityData to 13 Oct 2026

GraphUniverse: Synthetic Graph Generation for Evaluating Inductive Generalization

arXiv 2509.21097 ↗First posted 25 Sep 2025cs.LG cs.AIcited by 2

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Abstract (arXiv)

A fundamental challenge in graph learning is understanding how models generalize to new, unseen graphs. While synthetic benchmarks offer controlled settings for analysis, existing approaches are confined to single-graph, transductive settings where models train and test on the same graph structure. Addressing this gap, we introduce GraphUniverse, a framework for generating entire families of graphs to enable the first systematic evaluation of inductive generalization at scale. Our core innovation is the generation of graphs with persistent semantic communities, ensuring conceptual consistency while allowing fine-grained control over structural properties like homophily and degree distributions. This enables crucial but underexplored robustness tests, such as performance under controlled distribution shifts. Benchmarking a wide range of architectures -- from GNNs to graph transformers and topological architectures -- reveals that strong transductive performance is a poor predictor of inductive generalization. Furthermore, we find that robustness to distribution shift is highly sensitive not only to model architecture choice but also to the initial graph regime (e.g., high vs. low homophily). Beyond benchmarking, GraphUniverse's flexibility and scalability can facilitate the development of robust and truly generalizable architectures. The framework is open-source at https://github.com/LouisVanLangendonck/GraphUniverse.

Key facts. Cited by 2 papers in the map (data through 13 Oct 2026). Builds on 28 of its 39 references that are in the map. First posted on arXiv 25 Sep 2025.

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28 of 39 references.

References · 28

  1. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,318
  2. 2017Graph Attention Networkscited by 8,888
  3. 2017Inductive Representation Learning on Large Graphscited by 6,303
  4. 2018How Powerful are Graph Neural Networks?cited by 4,373
  5. 2017Neural Message Passing for Quantum Chemistrycited by 3,471
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16 more
  1. 2020Benchmarking Graph Neural Networkscited by 675
  2. 2021Beyond Low-frequency Information in Graph Convolutional Networkscited by 362
  3. 2017Community Detection and Stochastic Block Modelscited by 317
  4. 2022Neural Sheaf Diffusion: A Topological Perspective on Heterophily and Oversmoothing in GNNscited by 210
  5. 2022GOOD: A Graph Out-of-Distribution Benchmarkcited by 141
  6. 2023Towards Foundation Models for Knowledge Graph Reasoningcited by 83
  7. 2024OpenGraph: Towards Open Graph Foundation Modelscited by 76
  8. 2021Graph-MLP: Node Classification without Message Passing in Graphcited by 73
  9. 2022GraphWorld: Fake Graphs Bring Real Insights for GNNscited by 56
  10. 2025Position: Graph Learning Will Lose Relevance Due To Poor Benchmarkscited by 52
  11. 2025Graph Foundation Models: A Comprehensive Surveycited by 43
  12. 2024TopoBench: A Framework for Benchmarking Topological Deep Learningcited by 24
  13. 2024Graph Neural Networks for Financial Fraud Detection: A Reviewcited by 24
  14. 2024TopoTune : A Framework for Generalized Combinatorial Complex Neural Networkscited by 18
  15. 2023A Metadata-Driven Approach to Understand Graph Neural Networkscited by 10
  16. 2019ChebNet: Efficient and Stable Constructions of Deep Neural Networks with Rectified Power Units via Chebyshev Approximationscited by 8

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