mlsanityData to 7 Oct 2026

Graph Machine Learning in the Era of Large Language Models (LLMs)

arXiv 2404.14928 ↗First posted 23 Apr 2024cs.LG cs.AI cs.CLcited by 33

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Abstract (arXiv)

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a cornerstone in Graph Machine Learning (Graph ML), facilitating the representation and processing of graphs. Recently, LLMs have demonstrated unprecedented capabilities in language tasks and are widely adopted in a variety of applications such as computer vision and recommender systems. This remarkable success has also attracted interest in applying LLMs to the graph domain. Increasing efforts have been made to explore the potential of LLMs in advancing Graph ML's generalization, transferability, and few-shot learning ability. Meanwhile, graphs, especially knowledge graphs, are rich in reliable factual knowledge, which can be utilized to enhance the reasoning capabilities of LLMs and potentially alleviate their limitations such as hallucinations and the lack of explainability. Given the rapid progress of this research direction, a systematic review summarizing the latest advancements for Graph ML in the era of LLMs is necessary to provide an in-depth understanding to researchers and practitioners. Therefore, in this survey, we first review the recent developments in Graph ML. We then explore how LLMs can be utilized to enhance the quality of graph features, alleviate the reliance on labeled data, and address challenges such as graph Heterophily and out-of-distribution (OOD) generalization. Afterward, we delve into how graphs can enhance LLMs, highlighting their abilities to enhance LLM pre-training and inference. Furthermore, we investigate various applications and discuss the potential future directions in this promising field.

Key facts. Cited by 33 papers in the map (data through 7 Oct 2026). Builds on 220 of its 293 references that are in the map. First posted on arXiv 23 Apr 2024.

Builds on

220 of 293 references.

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50 most cited of 220 All 220 (JSON)

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 12; 2025: 17; 2026: 4.

33 papers.

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  1. 2025Knowledge Graph Retrieval-Augmented Generation for LLM-based Recommendationcited by 56
  2. 2024Text-space Graph Foundation Models: Comprehensive Benchmarks and New Insightscited by 44
  3. 2024A Survey of Mambacited by 39
  4. 2024TokenRec: Learning to Tokenize ID for LLM-based Generative Recommendationcited by 35
  5. 2024Score-based Generative Diffusion Models for Social Recommendationscited by 23
  6. 2024HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignmentcited by 17
  7. 2024OneEdit: A Neural-Symbolic Collaboratively Knowledge Editing Systemcited by 12
  8. 2025mKG-RAG: Leveraging Multimodal Knowledge Graphs in Retrieval-Augmented Generation for Knowledge-intensive VQAcited by 10
  9. 2025Model Generalization on Text Attribute Graphs: Principles with Large Language Modelscited by 8
  10. 2025Diffusion Generative Recommendation with Continuous Tokenscited by 8
  11. 2025Towards A Universal Graph Structural Encodercited by 7
  12. 2024SimGRAG: Leveraging Similar Subgraphs for Knowledge Graphs Driven Retrieval-Augmented Generationcited by 6
21 more
  1. 2025Computational Protein Science in the Era of Large Language Models (LLMs)cited by 6
  2. 2025KG-LLM-Bench: A Scalable Benchmark for Evaluating LLM Reasoning on Textualized Knowledge Graphscited by 6
  3. 2024Backdoor Graph Condensationcited by 5
  4. 2025Bridging Molecular Graphs and Large Language Modelscited by 5
  5. 2025LLMAP: LLM-Assisted Multi-Objective Route Planning with User Preferencescited by 5
  6. 2024Demystifying Higher-Order Graph Neural Networkscited by 4
  7. 2024ChartAdapter: Large Vision-Language Model for Chart Summarizationcited by 4
  8. 2025The Impact of Feature Scaling In Machine Learning: Effects on Regression and Classification Taskscited by 4
  9. 2026S-Path-RAG: Semantic-Aware Shortest-Path Retrieval Augmented Generation for Multi-Hop Knowledge Graph Question Answeringcited by 3
  10. 2024Filter-then-Generate: Large Language Models with Structure-Text Adapter for Knowledge Graph Completioncited by 2
  11. 2025Language Models as Messengers: Enhancing Message Passing in Heterophilic Graph Learningcited by 2
  12. 2025Damba-ST: Domain-Adaptive Mamba for Efficient Urban Spatio-Temporal Predictioncited by 2
  13. 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
  14. 2026Relatron: Automating Relational Machine Learning over Relational Databasescited by 2
  15. 2026Mixture-of-Experts Knowledge Graph Retrieval-Augmented Generation for Multi-Agent LLM-based Recommendationcited by 2
  16. 2024Towards Graph Prompt Learning: A Survey and Beyondcited by 1
  17. 2025Deploying AI for Signal Processing education: Selected challenges and intriguing opportunitiescited by 1
  18. 2025Robustness in Text-Attributed Graph Learning: Insights, Trade-offs, and New Defensescited by 1
  19. 2025MES-RAG: Bringing Multi-modal, Entity-Storage, and Secure Enhancements to RAGcited by 0
  20. 2025DialogGraph-LLM: Graph-Informed LLMs for End-to-End Audio Dialogue Intent Recognitioncited by 0
  21. 2026ERAlign: Energy-based Representation Alignment of GNNs and LLMs on Text-attributed Graphscited by 0

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