GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networks
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Abstract (arXiv)
Graphs can model complex relationships between objects, enabling a myriad of Web applications such as online page/article classification and social recommendation. While graph neural networks(GNNs) have emerged as a powerful tool for graph representation learning, in an end-to-end supervised setting, their performance heavily rely on a large amount of task-specific supervision. To reduce labeling requirement, the "pre-train, fine-tune" and "pre-train, prompt" paradigms have become increasingly common. In particular, prompting is a popular alternative to fine-tuning in natural language processing, which is designed to narrow the gap between pre-training and downstream objectives in a task-specific manner. However, existing study of prompting on graphs is still limited, lacking a universal treatment to appeal to different downstream tasks. In this paper, we propose GraphPrompt, a novel pre-training and prompting framework on graphs. GraphPrompt not only unifies pre-training and downstream tasks into a common task template, but also employs a learnable prompt to assist a downstream task in locating the most relevant knowledge from the pre-train model in a task-specific manner. Finally, we conduct extensive experiments on five public datasets to evaluate and analyze GraphPrompt.
Key facts. Cited by 166 papers in the map (data through 7 Oct 2026). Builds on 46 of its 59 references that are in the map. First posted on arXiv 16 Feb 2023.
Builds on
46 of 59 references.
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Citing papers per year: 2023: 19; 2024: 63; 2025: 47; 2026: 37.
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- 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 239
- 2023GraphGPT: Graph Instruction Tuning for Large Language Modelscited by 223
- 2023Graph Foundation Models: Concepts, Opportunities and Challengescited by 101
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- 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 83
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- 2024OpenGraph: Towards Open Graph Foundation Modelscited by 75
- 2024GraphTranslator: Aligning Graph Model to Large Language Model for Open-ended Taskscited by 63
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 61
- 2024UniGraph: Learning a Unified Cross-Domain Foundation Model for Text-Attributed Graphscited by 60
- 2024LLMs as Zero-shot Graph Learners: Alignment of GNN Representations with LLM Token Embeddingscited by 60
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- 2023Virtual Node Tuning for Few-shot Node Classificationcited by 46
- 2024Text-space Graph Foundation Models: Comprehensive Benchmarks and New Insightscited by 44
- 2023Generalized Graph Prompt: Toward a Unification of Pre-Training and Downstream Tasks on Graphscited by 39
- 2023SGL-PT: A Strong Graph Learner with Graph Prompt Tuningcited by 35
- 2024Graph Machine Learning in the Era of Large Language Models (LLMs)cited by 33
- 2023GraphControl: Adding Conditional Control to Universal Graph Pre-trained Models for Graph Domain Transfer Learningcited by 32
- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networkscited by 32
- 2024Non-Homophilic Graph Pre-Training and Prompt Learningcited by 31
- 2024Towards Graph Foundation Models: Learning Generalities Across Graphs via Task-Treescited by 30
- 2024ProG: A Graph Prompt Learning Benchmarkcited by 29
- 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
- 2024Zero-shot Generalist Graph Anomaly Detection with Unified Neighborhood Promptscited by 24
- 2023Data-centric Graph Learning: A Surveycited by 22
- 2025AnomalyGFM: Graph Foundation Model for Zero/Few-shot Anomaly Detectioncited by 22
- 2023HGCLIP: Exploring Vision-Language Models with Graph Representations for Hierarchical Understandingcited by 21
- 2024GraphLoRA: Structure-Aware Contrastive Low-Rank Adaptation for Cross-Graph Transfer Learningcited by 21
- 2024EXGC: Bridging Efficiency and Explainability in Graph Condensationcited by 20
- 2025Edge Prompt Tuning for Graph Neural Networkscited by 18
- 2023GraphPro: Graph Pre-training and Prompt Learning for Recommendationcited by 17
- 2024A Survey of Large Language Models on Generative Graph Analytics: Query, Learning, and Applicationscited by 17
- 2024Advancing Graph Representation Learning with Large Language Models: A Comprehensive Survey of Techniquescited by 16
- 2023A Survey of Imbalanced Learning on Graphs: Problems, Techniques, and Future Directionscited by 15
- 2024Cross-Context Backdoor Attacks against Graph Prompt Learningcited by 14
- 2023Search to Fine-tune Pre-trained Graph Neural Networks for Graph-level Taskscited by 13
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2024Inductive Graph Alignment Prompt: Bridging the Gap between Graph Pre-training and Inductive Fine-tuning From Spectral Perspectivecited by 13
- 2024UniGAD: Unifying Multi-level Graph Anomaly Detectioncited by 13
- 2024Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?cited by 13
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
- 2024One Model for One Graph: A New Perspective for Pretraining with Cross-domain Graphscited by 12
- 2024Node-Time Conditional Prompt Learning In Dynamic Graphscited by 11
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approachcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Endowing Pre-trained Graph Models with Provable Fairnesscited by 10
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
50 most cited of 166 All 166 (JSON)
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transport20 Sep 2026
- 2026Online Test-Time Adaptation for Generalizable Dynamic Graph Anomaly Detection20 Aug 2026
- 2026Disentangling Homophily and Rarity: Explaining Failure in Graph Neural Networks14 Aug 2026
- 2026Node4All: Learning Node Representation Beyond Datasets19 Jul 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026Model Agnostic Graph Prompt Learning for Crystal Property Prediction9 Jul 2026
- 2026Adaptive Recurrent Message Passing for Test Time Computing on Graphs21 Jun 2026
- 2026GraspLLM: Towards Zero-Shot Generalization on Text-Attributed Graphs with LLMs10 Jun 2026
- 2026SPR: Toward a Graph Foundation Model for Transferable Graph Cognition via Spectral Patterns and Relational Geometry2 Jun 2026
- 2026Message Tuning Outshines Graph Prompt Tuning: A Prismatic Space Perspective2 Jun 2026
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- 2026G2LoRA: Gradient Orthogonal Low-Rank Adaptation Framework for Graph Continual Learning on Text-Attributed Graphs1 Jun 2026
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- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts15 May 2026
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuning14 May 2026
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Models13 May 2026
- 2026A Unified Graph Language Model for Multi-Domain Multi-Task Graph Alignment Instruction Tuning12 May 2026
- 2026Learning Graph Foundation Models on Riemannian Graph-of-Graphs11 May 2026
- 2026Empowering Heterogeneous Graph Foundation Models via Decoupled Relation Alignment1 May 2026
- 2026Mochi: Aligning Pre-training and Inference for Efficient Graph Foundation Models via Meta-Learning23 Apr 2026
- 2026Unified Graph Prompt Learning via Low-Rank Graph Message Prompting13 Apr 2026
- 2026Disentangled Graph Prompting for Out-Of-Distribution Detection31 Mar 2026
- 2026CrossHGL: A Text-Free Foundation Model for Cross-Domain Heterogeneous Graph Learning29 Mar 2026
- 2026Modality-free Graph In-context Alignment13 Mar 2026
- 2026Multi-Domain Riemannian Graph Gluing for Building Graph Foundation Models28 Feb 2026
- 2026LEDA: Latent Semantic Distribution Alignment for Multi-domain Graph Pre-training26 Feb 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026MAGPrompt: Message-Adaptive Graph Prompt Tuning for Graph Neural Networks5 Feb 2026
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning4 Feb 2026
- 2026RAG-GFM: Overcoming In-Memory Bottlenecks in Graph Foundation Models via Retrieval-Augmented Generation21 Jan 2026
- 2026A Graph Prompt Fine-Tuning Method for WSN Spatio-Temporal Correlation Anomaly Detection19 Jan 2026
- 2026Data-centric Prompt Tuning for Dynamic Graphs17 Jan 2026
- 2026Prompt Tuning without Labeled Samples for Zero-Shot Node Classification in Text-Attributed Graphs7 Jan 2026
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learning6 Jan 2026
- 2026Exploring Diversity, Novelty, and Popularity Bias in ChatGPT's Recommendations5 Jan 2026
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- 2025Learning and Editing Universal Graph Prompt Tuning via Reinforcement Learning9 Dec 2025
- 2025Robust and Generalizable GNN Fine-Tuning via Uncertainty-aware Adapter Learning24 Nov 2025
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering6 Nov 2025
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning5 Nov 2025
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggers26 Oct 2025
- 2025GraphTOP: Graph Topology-Oriented Prompting for Graph Neural Networks25 Oct 2025
- 2025Learning Noise-Resilient and Transferable Graph-Text Alignment via Dynamic Quality Assessment22 Oct 2025
- 2025UniGTE: Unified Graph-Text Encoding for Zero-Shot Generalization across Graph Tasks and Domains19 Oct 2025
- 2025Stealthy Dual-Trigger Backdoors: Attacking Prompt Tuning in LM-Empowered Graph Foundation Models16 Oct 2025
- 2025Unveiling the Vulnerability of Graph-LLMs: An Interpretable Multi-Dimensional Adversarial Attack on TAGs14 Oct 2025
- 2025H4G: Unlocking Faithful Inference for Zero-Shot Graph Learning in Hyperbolic Space14 Oct 2025
- 2025MolGA: Molecular Graph Adaptation with Pre-trained 2D Graph Encoder8 Oct 2025
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning6 Oct 2025
50 newest of 166 All 166 (JSON)
- 2024AnyGraph: Graph Foundation Model in the Wildcited by 51
- 2024AnyGraph: Graph Foundation Model in the Wild20 Aug 2024
- 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 239
- 2023GraphGPT: Graph Instruction Tuning for Large Language Modelscited by 223
- 2023Graph Foundation Models: Concepts, Opportunities and Challengescited by 101
- 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 84
- 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 83
- 2024GFT: Graph Foundation Model with Transferable Tree Vocabularycited by 82
- 2024OpenGraph: Towards Open Graph Foundation Modelscited by 75
- 2024GraphTranslator: Aligning Graph Model to Large Language Model for Open-ended Taskscited by 63
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 61
- 2024UniGraph: Learning a Unified Cross-Domain Foundation Model for Text-Attributed Graphscited by 60
- 2024LLMs as Zero-shot Graph Learners: Alignment of GNN Representations with LLM Token Embeddingscited by 60
12 most cited of 153 All 153 (JSON)
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transport20 Sep 2026
- 2026Online Test-Time Adaptation for Generalizable Dynamic Graph Anomaly Detection20 Aug 2026
- 2026Disentangling Homophily and Rarity: Explaining Failure in Graph Neural Networks14 Aug 2026
- 2026Node4All: Learning Node Representation Beyond Datasets19 Jul 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026Model Agnostic Graph Prompt Learning for Crystal Property Prediction9 Jul 2026
- 2026Adaptive Recurrent Message Passing for Test Time Computing on Graphs21 Jun 2026
- 2026GraspLLM: Towards Zero-Shot Generalization on Text-Attributed Graphs with LLMs10 Jun 2026
- 2026SPR: Toward a Graph Foundation Model for Transferable Graph Cognition via Spectral Patterns and Relational Geometry2 Jun 2026
- 2026Message Tuning Outshines Graph Prompt Tuning: A Prismatic Space Perspective2 Jun 2026
12 newest of 153 All 153 (JSON)