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InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization

arXiv 1908.01000 ↗First posted 31 Jul 2019cs.LG cs.AI stat.MLcited by 441

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Abstract (arXiv)

This paper studies learning the representations of whole graphs in both unsupervised and semi-supervised scenarios. Graph-level representations are critical in a variety of real-world applications such as predicting the properties of molecules and community analysis in social networks. Traditional graph kernel based methods are simple, yet effective for obtaining fixed-length representations for graphs but they suffer from poor generalization due to hand-crafted designs. There are also some recent methods based on language models (e.g. graph2vec) but they tend to only consider certain substructures (e.g. subtrees) as graph representatives. Inspired by recent progress of unsupervised representation learning, in this paper we proposed a novel method called InfoGraph for learning graph-level representations. We maximize the mutual information between the graph-level representation and the representations of substructures of different scales (e.g., nodes, edges, triangles). By doing so, the graph-level representations encode aspects of the data that are shared across different scales of substructures. Furthermore, we further propose InfoGraph*, an extension of InfoGraph for semi-supervised scenarios. InfoGraph* maximizes the mutual information between unsupervised graph representations learned by InfoGraph and the representations learned by existing supervised methods. As a result, the supervised encoder learns from unlabeled data while preserving the latent semantic space favored by the current supervised task. Experimental results on the tasks of graph classification and molecular property prediction show that InfoGraph is superior to state-of-the-art baselines and InfoGraph* can achieve performance competitive with state-of-the-art semi-supervised models.

Key facts. Cited by 441 papers in the map (data through 7 Oct 2026). First posted on arXiv 31 Jul 2019.

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Citing papers per year: 2021: 86; 2022: 105; 2023: 86; 2024: 91; 2025: 51; 2026: 22.

441 papers.

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  1. 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
  2. 2021Graph Self-Supervised Learning: A Surveycited by 289
  3. 2021Graph Contrastive Learning Automatedcited by 287
  4. 2021Pre-training Molecular Graph Representation with 3D Geometrycited by 248
  5. 2021ChemRL-GEM: Geometry Enhanced Molecular Representation Learning for Property Predictioncited by 204
  6. 2021Adversarial Graph Augmentation to Improve Graph Contrastive Learningcited by 200
  7. 2021Large-Scale Representation Learning on Graphs via Bootstrappingcited by 184
  8. 2021Self-Supervised Learning of Graph Neural Networks: A Unified Reviewcited by 184
  9. 2022SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentationcited by 171
  10. 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 166
  11. 2022Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editingcited by 165
  12. 2021Motif-based Graph Self-Supervised Learning for Molecular Property Predictioncited by 159
38 more
  1. 2021Self-Supervised Representation Learning: Introduction, Advances and Challengescited by 147
  2. 2021From Canonical Correlation Analysis to Self-supervised Graph Neural Networkscited by 138
  3. 2021Self-supervised Learning on Graphs: Contrastive, Generative,or Predictivecited by 136
  4. 2023GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learnercited by 131
  5. 2021Self-supervised Graph-level Representation Learning with Local and Global Structurecited by 125
  6. 2022Pre-training via Denoising for Molecular Property Predictioncited by 124
  7. 2021An Empirical Study of Graph Contrastive Learningcited by 113
  8. 2021InfoGCL: Information-Aware Graph Contrastive Learningcited by 105
  9. 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
  10. 2021Interventional Video Grounding with Dual Contrastive Learningcited by 94
  11. 2021Augmentation-Free Self-Supervised Learning on Graphscited by 94
  12. 2022Deep Isolation Forest for Anomaly Detectioncited by 90
  13. 2022Improving Graph Collaborative Filtering with Neighborhood-enriched Contrastive Learningcited by 86
  14. 2021Extending the WILDS Benchmark for Unsupervised Adaptationcited by 85
  15. 2021Graph-based Semi-supervised Learning: A Comprehensive Reviewcited by 79
  16. 2022PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understandingcited by 77
  17. 2022One Transformer Can Understand Both 2D & 3D Molecular Datacited by 77
  18. 2021DIG: A Turnkey Library for Diving into Graph Deep Learning Researchcited by 76
  19. 2021SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanismcited by 75
  20. 2021Towards Self-Explainable Graph Neural Networkcited by 75
  21. 2021AutoGCL: Automated Graph Contrastive Learning via Learnable View Generatorscited by 73
  22. 2021ProGCL: Rethinking Hard Negative Mining in Graph Contrastive Learningcited by 72
  23. 2021Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learningcited by 70
  24. 2023GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learningcited by 70
  25. 2021Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Futurecited by 67
  26. 2021Deep Graph-level Anomaly Detection by Glocal Knowledge Distillationcited by 67
  27. 2022Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matchingcited by 67
  28. 2022MolGenSurvey: A Systematic Survey in Machine Learning Models for Molecule Designcited by 66
  29. 2021TCL: Transformer-based Dynamic Graph Modelling via Contrastive Learningcited by 65
  30. 2021MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graphcited by 65
  31. 2023Graph Mixture of Experts: Learning on Large-Scale Graphs with Explicit Diversity Modelingcited by 63
  32. 2021GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Predictioncited by 61
  33. 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 61
  34. 2021Video Corpus Moment Retrieval with Contrastive Learningcited by 60
  35. 2022Let Invariant Rationale Discovery Inspire Graph Contrastive Learningcited by 57
  36. 2021Local Augmentation for Graph Neural Networkscited by 52
  37. 2022Graph-based Molecular Representation Learningcited by 51
  38. 2021Molecular Contrastive Learning with Chemical Element Knowledge Graphcited by 50

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