HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networks
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Abstract (arXiv)
Graphs have emerged as a natural choice to represent and analyze the intricate patterns and rich information of the Web, enabling applications such as online page classification and social recommendation. The prevailing "pre-train, fine-tune" paradigm has been widely adopted in graph machine learning tasks, particularly in scenarios with limited labeled nodes. However, this approach often exhibits a misalignment between the training objectives of pretext tasks and those of downstream tasks. This gap can result in the "negative transfer" problem, wherein the knowledge gained from pre-training adversely affects performance in the downstream tasks. The surge in prompt-based learning within Natural Language Processing (NLP) suggests the potential of adapting a "pre-train, prompt" paradigm to graphs as an alternative. However, existing graph prompting techniques are tailored to homogeneous graphs, neglecting the inherent heterogeneity of Web graphs. To bridge this gap, we propose HetGPT, a general post-training prompting framework to improve the predictive performance of pre-trained heterogeneous graph neural networks (HGNNs). The key is the design of a novel prompting function that integrates a virtual class prompt and a heterogeneous feature prompt, with the aim to reformulate downstream tasks to mirror pretext tasks. Moreover, HetGPT introduces a multi-view neighborhood aggregation mechanism, capturing the complex neighborhood structure in heterogeneous graphs. Extensive experiments on three benchmark datasets demonstrate HetGPT's capability to enhance the performance of state-of-the-art HGNNs on semi-supervised node classification.
Key facts. Cited by 33 papers in the map (data through 14 Oct 2026). Builds on 28 of its 41 references that are in the map. First posted on arXiv 23 Oct 2023.
Builds on
28 of 41 references.
References · 28
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- 2022Visual Prompt Tuningcited by 1,681
- 2019Heterogeneous Graph Attention Networkcited by 734
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16 more
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 167
- 2021Self-supervised Heterogeneous Graph Neural Network with Co-contrastive Learningcited by 130
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Citing papers per year: 2023: 1; 2024: 13; 2025: 12; 2026: 7.
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- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2025Edge Prompt Tuning for Graph Neural Networkscited by 18
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approachcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2024Urban Region Pre-training and Prompting: A Graph-based Approachcited by 8
- 2024Few-Shot Causal Representation Learning for Out-of-Distribution Generalization on Heterogeneous Graphscited by 6
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learningcited by 6
- 2024SGPT: Few-Shot Prompt Tuning for Signed Graphscited by 6
- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learningcited by 6
21 more
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learningcited by 4
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Promptingcited by 3
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
- 2024A Unified Graph Selective Prompt Learning for Graph Neural Networkscited by 2
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
- 2024HG-Adapter: Improving Pre-Trained Heterogeneous Graph Neural Networks with Dual Adapterscited by 2
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encodingcited by 2
- 2024Towards Graph Prompt Learning: A Survey and Beyondcited by 1
- 2024PromptGCN: Bridging Subgraph Gaps in Lightweight GCNscited by 1
- 2025MAPN: Enhancing Heterogeneous Sparse Graph Representation by Mamba-based Asynchronous Aggregationcited by 1
- 2025Heterogeneous Graph Prompt Learning via Adaptive Weight Pruningcited by 1
- 2025Prompt-guided Disentangled Representation for Action Recognitioncited by 1
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learningcited by 1
- 2026Empowering Heterogeneous Graph Foundation Models via Decoupled Relation Alignmentcited by 1
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Expertscited by 1
- 2025FHGE: A Fast Heterogeneous Graph Embedding with Ad-hoc Meta-pathscited by 0
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggerscited by 0
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answeringcited by 0
- 2026Robust Graph Fine-Tuning with Adversarial Graph Promptingcited by 0
- 2026CrossHGL: A Text-Free Foundation Model for Cross-Domain Heterogeneous Graph Learningcited by 0
- 2026Riemannian Graph Tokenizer for Structural Knowledge Transfercited by 0
- 2026Riemannian Graph Tokenizer for Structural Knowledge Transfer11 Oct 2026
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts15 May 2026
- 2026Empowering Heterogeneous Graph Foundation Models via Decoupled Relation Alignment1 May 2026
- 2026CrossHGL: A Text-Free Foundation Model for Cross-Domain Heterogeneous Graph Learning29 Mar 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learning6 Jan 2026
- 2026Robust Graph Fine-Tuning with Adversarial Graph Prompting1 Jan 2026
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering6 Nov 2025
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggers26 Oct 2025
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Models26 Sep 2025
- 2025Prompt-guided Disentangled Representation for Action Recognition26 Sep 2025
- 2025Heterogeneous Graph Prompt Learning via Adaptive Weight Pruning12 Jul 2025
21 more
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learning10 Jul 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learning4 May 2025
- 2025Edge Prompt Tuning for Graph Neural Networks2 Mar 2025
- 2025MAPN: Enhancing Heterogeneous Sparse Graph Representation by Mamba-based Asynchronous Aggregation23 Feb 2025
- 2025FHGE: A Fast Heterogeneous Graph Embedding with Ad-hoc Meta-paths22 Feb 2025
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approach25 Jan 2025
- 2024SGPT: Few-Shot Prompt Tuning for Signed Graphs11 Dec 2024
- 2024HG-Adapter: Improving Pre-Trained Heterogeneous Graph Neural Networks with Dual Adapters2 Nov 2024
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Prompting29 Oct 2024
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networks17 Oct 2024
- 2024PromptGCN: Bridging Subgraph Gaps in Lightweight GCNs14 Oct 2024
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysis2 Oct 2024
- 2024Towards Graph Prompt Learning: A Survey and Beyond26 Aug 2024
- 2024Urban Region Pre-training and Prompting: A Graph-based Approach12 Aug 2024
- 2024A Unified Graph Selective Prompt Learning for Graph Neural Networks15 Jun 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learning2 Feb 2024
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directions18 Jan 2024
- 2024Few-Shot Causal Representation Learning for Out-of-Distribution Generalization on Heterogeneous Graphs7 Jan 2024
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyond28 Nov 2023
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2025Edge Prompt Tuning for Graph Neural Networkscited by 18
- 2024A Survey on Learning from Graphs with Heterophily: Recent Advances and Future Directionscited by 13
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approachcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2024Urban Region Pre-training and Prompting: A Graph-based Approachcited by 8
- 2024Few-Shot Causal Representation Learning for Out-of-Distribution Generalization on Heterogeneous Graphscited by 6
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learningcited by 6
- 2024SGPT: Few-Shot Prompt Tuning for Signed Graphscited by 6
- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learningcited by 6
12 most cited of 31 All 31 (JSON)
- 2026Riemannian Graph Tokenizer for Structural Knowledge Transfer11 Oct 2026
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts15 May 2026
- 2026Empowering Heterogeneous Graph Foundation Models via Decoupled Relation Alignment1 May 2026
- 2026CrossHGL: A Text-Free Foundation Model for Cross-Domain Heterogeneous Graph Learning29 Mar 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learning6 Jan 2026
- 2026Robust Graph Fine-Tuning with Adversarial Graph Prompting1 Jan 2026
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggers26 Oct 2025
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Models26 Sep 2025
- 2025Prompt-guided Disentangled Representation for Action Recognition26 Sep 2025
- 2025Heterogeneous Graph Prompt Learning via Adaptive Weight Pruning12 Jul 2025
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learning10 Jul 2025
12 newest of 31 All 31 (JSON)