Generalized Graph Prompt: Toward a Unification of Pre-Training and Downstream Tasks on Graphs
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Abstract (arXiv)
Graph neural networks have emerged as a powerful tool for graph representation learning, but their performance heavily relies on abundant task-specific supervision. To reduce labeling requirement, the "pre-train, prompt" paradigms have become increasingly common. However, existing study of prompting on graphs is limited, lacking a universal treatment to appeal to different downstream tasks. In this paper, we propose GraphPrompt, a novel pre-training and prompting framework on graphs. GraphPrompt not only unifies pre-training and downstream tasks into a common task template but also employs a learnable prompt to assist a downstream task in locating the most relevant knowledge from the pre-trained model in a task-specific manner. To further enhance GraphPrompt in these two stages, we extend it into GraphPrompt+ with two major enhancements. First, we generalize several popular graph pre-training tasks beyond simple link prediction to broaden the compatibility with our task template. Second, we propose a more generalized prompt design that incorporates a series of prompt vectors within every layer of the pre-trained graph encoder, in order to capitalize on the hierarchical information across different layers beyond just the readout layer. Finally, we conduct extensive experiments on five public datasets to evaluate and analyze GraphPrompt and GraphPrompt+.
Key facts. Cited by 39 papers in the map (data through 7 Oct 2026). Builds on 76 of its 130 references that are in the map. First posted on arXiv 26 Nov 2023.
Builds on
76 of 130 references.
References · 76
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50 most cited of 76 All 76 (JSON)
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Citing papers per year: 2023: 2; 2024: 13; 2025: 14; 2026: 10.
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- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 61
- 2024GOFA: A Generative One-For-All Model for Joint Graph Language Modelingcited by 56
- 2023HGPROMPT: Bridging Homogeneous and Heterogeneous Graphs for Few-shot Prompt Learningcited by 45
- 2023MultiGPrompt for Multi-Task Pre-Training and Prompting on Graphscited by 40
- 2024Non-Homophilic Graph Pre-Training and Prompt Learningcited by 31
- 2024EXGC: Bridging Efficiency and Explainability in Graph Condensationcited by 20
- 2025Edge Prompt Tuning for Graph Neural Networkscited by 18
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
- 2024Node-Time Conditional Prompt Learning In Dynamic Graphscited by 11
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approachcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Graph Fairness Learning under Distribution Shiftscited by 10
27 more
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2024Advancing Molecular Graph-Text Pre-training via Fine-grained Alignmentcited by 9
- 2025GCoT: Chain-of-Thought Prompt Learning for Graphscited by 9
- 2024Urban Region Pre-training and Prompting: A Graph-based Approachcited by 8
- 2024SGPT: Few-Shot Prompt Tuning for Signed Graphscited by 6
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learningcited by 5
- 2025GraphTOP: Graph Topology-Oriented Prompting for Graph Neural Networkscited by 5
- 2025Graph Positional Autoencoders as Self-supervised Learnerscited by 3
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
- 2026Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insightscited by 3
- 2026Learning Graph Foundation Models on Riemannian Graph-of-Graphscited by 3
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approachcited by 2
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
- 2024HG-Adapter: Improving Pre-Trained Heterogeneous Graph Neural Networks with Dual Adapterscited by 2
- 2025Towards Efficient LLM-aware Heterogeneous Graph Learningcited by 2
- 2026Dynamic Graph Prompting via Topology-Routed Mixed-Curvature Expertscited by 2
- 2026MAGPrompt: Message-Adaptive Graph Prompt Tuning for Graph Neural Networkscited by 1
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuningcited by 1
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignmentcited by 1
- 2025Freeze, Prompt, and Adapt: A Framework for Source-free Unsupervised GNN Promptingcited by 0
- 2025MolGA: Molecular Graph Adaptation with Pre-trained 2D Graph Encodercited by 0
- 2025Adaptive Graph Mixture of Residual Experts: Unsupervised Learning on Diverse Graphs with Heterogeneous Specializationcited by 0
- 2025Towards Fair Graph Prompting: A Dual-Prompt Mechanism for Mitigating Attribute and Structural Biascited by 0
- 2026Robust Graph Fine-Tuning with Adversarial Graph Promptingcited by 0
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learningcited by 0
- 2026PreGress: Ranking-Native Pre-training and Prompting for Graph Node Rankingcited by 0
- 2026Task-Specific Prompt with Global Context for Multi-Task Graph Pre-Trainingcited by 0
- 2026Task-Specific Prompt with Global Context for Multi-Task Graph Pre-Training30 Aug 2026
- 2026PreGress: Ranking-Native Pre-training and Prompting for Graph Node Ranking10 Aug 2026
- 2026Dynamic Graph Prompting via Topology-Routed Mixed-Curvature Experts6 Aug 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuning14 May 2026
- 2026Learning Graph Foundation Models on Riemannian Graph-of-Graphs11 May 2026
- 2026Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insights28 Feb 2026
- 2026MAGPrompt: Message-Adaptive Graph Prompt Tuning for Graph Neural Networks5 Feb 2026
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning4 Feb 2026
- 2026Robust Graph Fine-Tuning with Adversarial Graph Prompting1 Jan 2026
- 2025Towards Efficient LLM-aware Heterogeneous Graph Learning22 Nov 2025
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning5 Nov 2025
27 more
- 2025Towards Fair Graph Prompting: A Dual-Prompt Mechanism for Mitigating Attribute and Structural Bias27 Oct 2025
- 2025GraphTOP: Graph Topology-Oriented Prompting for Graph Neural Networks25 Oct 2025
- 2025Adaptive Graph Mixture of Residual Experts: Unsupervised Learning on Diverse Graphs with Heterogeneous Specialization24 Oct 2025
- 2025MolGA: Molecular Graph Adaptation with Pre-trained 2D Graph Encoder8 Oct 2025
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Models26 Sep 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025Graph Positional Autoencoders as Self-supervised Learners29 May 2025
- 2025Freeze, Prompt, and Adapt: A Framework for Source-free Unsupervised GNN Prompting22 May 2025
- 2025Edge Prompt Tuning for Graph Neural Networks2 Mar 2025
- 2025GCoT: Chain-of-Thought Prompt Learning for Graphs12 Feb 2025
- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptation8 Feb 2025
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approach25 Jan 2025
- 2024SGPT: Few-Shot Prompt Tuning for Signed Graphs11 Dec 2024
- 2024HG-Adapter: Improving Pre-Trained Heterogeneous Graph Neural Networks with Dual Adapters2 Nov 2024
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networks17 Oct 2024
- 2024Advancing Molecular Graph-Text Pre-training via Fine-grained Alignment21 Sep 2024
- 2024Non-Homophilic Graph Pre-Training and Prompt Learning22 Aug 2024
- 2024Urban Region Pre-training and Prompting: A Graph-based Approach12 Aug 2024
- 2024GOFA: A Generative One-For-All Model for Joint Graph Language Modeling12 Jul 2024
- 2024Node-Time Conditional Prompt Learning In Dynamic Graphs22 May 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024Exploring Task Unification in Graph Representation Learning via Generative Approach21 Mar 2024
- 2024EXGC: Bridging Efficiency and Explainability in Graph Condensation5 Feb 2024
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learning2 Feb 2024
- 2024Graph Fairness Learning under Distribution Shifts30 Jan 2024
- 2023HGPROMPT: Bridging Homogeneous and Heterogeneous Graphs for Few-shot Prompt Learning4 Dec 2023
- 2023MultiGPrompt for Multi-Task Pre-Training and Prompting on Graphs28 Nov 2023
- 2025GCoT: Chain-of-Thought Prompt Learning for Graphscited by 9
- 2025GCoT: Chain-of-Thought Prompt Learning for Graphs12 Feb 2025
- 2025SAMGPT: Text-free Graph Foundation Model for Multi-domain Pre-training and Cross-domain Adaptationcited by 61
- 2024GOFA: A Generative One-For-All Model for Joint Graph Language Modelingcited by 56
- 2023HGPROMPT: Bridging Homogeneous and Heterogeneous Graphs for Few-shot Prompt Learningcited by 45
- 2023MultiGPrompt for Multi-Task Pre-Training and Prompting on Graphscited by 40
- 2024Non-Homophilic Graph Pre-Training and Prompt Learningcited by 31
- 2024EXGC: Bridging Efficiency and Explainability in Graph Condensationcited by 20
- 2025Edge Prompt Tuning for Graph Neural Networkscited by 18
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
- 2024Node-Time Conditional Prompt Learning In Dynamic Graphscited by 11
- 2025DAGPrompT: Pushing the Limits of Graph Prompting with a Distribution-aware Graph Prompt Tuning Approachcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Graph Fairness Learning under Distribution Shiftscited by 10
12 most cited of 36 All 36 (JSON)
- 2026Task-Specific Prompt with Global Context for Multi-Task Graph Pre-Training30 Aug 2026
- 2026Dynamic Graph Prompting via Topology-Routed Mixed-Curvature Experts6 Aug 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuning14 May 2026
- 2026Learning Graph Foundation Models on Riemannian Graph-of-Graphs11 May 2026
- 2026Evaluating Progress in Graph Foundation Models: A Comprehensive Benchmark and New Insights28 Feb 2026
- 2026MAGPrompt: Message-Adaptive Graph Prompt Tuning for Graph Neural Networks5 Feb 2026
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning4 Feb 2026
- 2026Robust Graph Fine-Tuning with Adversarial Graph Prompting1 Jan 2026
- 2025Towards Efficient LLM-aware Heterogeneous Graph Learning22 Nov 2025
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning5 Nov 2025
- 2025Towards Fair Graph Prompting: A Dual-Prompt Mechanism for Mitigating Attribute and Structural Bias27 Oct 2025
12 newest of 36 All 36 (JSON)