A Comprehensive Survey of Graph Embedding: Problems, Techniques and Applications
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Abstract (arXiv)
Graph is an important data representation which appears in a wide diversity of real-world scenarios. Effective graph analytics provides users a deeper understanding of what is behind the data, and thus can benefit a lot of useful applications such as node classification, node recommendation, link prediction, etc. However, most graph analytics methods suffer the high computation and space cost. Graph embedding is an effective yet efficient way to solve the graph analytics problem. It converts the graph data into a low dimensional space in which the graph structural information and graph properties are maximally preserved. In this survey, we conduct a comprehensive review of the literature in graph embedding. We first introduce the formal definition of graph embedding as well as the related concepts. After that, we propose two taxonomies of graph embedding which correspond to what challenges exist in different graph embedding problem settings and how the existing work address these challenges in their solutions. Finally, we summarize the applications that graph embedding enables and suggest four promising future research directions in terms of computation efficiency, problem settings, techniques and application scenarios.
Key facts. Cited by 260 papers in the map (data through 7 Oct 2026). First posted on arXiv 22 Sep 2017.
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Citing papers per year: 2021: 78; 2022: 49; 2023: 49; 2024: 48; 2025: 24; 2026: 12.
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- 2021Graph Learning: A Surveycited by 140
- 2022Deep Clustering: A Comprehensive Surveycited by 78
- 2021SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanismcited by 75
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2022A Survey on Graph Representation Learning Methodscited by 66
- 2021A Survey on Embedding Dynamic Graphscited by 60
- 2021E-GraphSAGE: A Graph Neural Network based Intrusion Detection System for IoTcited by 55
- 2022Instance Relation Graph Guided Source-Free Domain Adaptive Object Detectioncited by 55
- 2021ImGAGN:Imbalanced Network Embedding via Generative Adversarial Graph Networkscited by 51
- 2022Hyperbolic Graph Neural Networks: A Review of Methods and Applicationscited by 40
- 2023MultiGPrompt for Multi-Task Pre-Training and Prompting on Graphscited by 40
38 more
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- 2021FedGL: Federated Graph Learning Framework with Global Self-Supervisioncited by 34
- 2021Combining Graph Neural Networks with Expert Knowledge for Smart Contract Vulnerability Detectioncited by 34
- 2021Block Modeling-Guided Graph Convolutional Neural Networkscited by 32
- 2024Graph Transformers: A Surveycited by 32
- 2022Graph Lifelong Learning: A Surveycited by 30
- 2021Marius: Learning Massive Graph Embeddings on a Single Machinecited by 29
- 2022Parallel and Distributed Graph Neural Networks: An In-Depth Concurrency Analysiscited by 29
- 2024A Comprehensive Survey of Dynamic Graph Neural Networks: Models, Frameworks, Benchmarks, Experiments and Challengescited by 29
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- 2023HGCLIP: Exploring Vision-Language Models with Graph Representations for Hierarchical Understandingcited by 21
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- 2021Neural ranking models for document retrievalcited by 16
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- 2021HW2VEC: A Graph Learning Tool for Automating Hardware Securitycited by 16
- 2021Adversarial Attacks on Knowledge Graph Embeddings via Instance Attribution Methodscited by 16
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- 2023Dynamic Graph Representation Learning with Neural Networks: A Surveycited by 15
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- 2022CenGCN: Centralized Convolutional Networks with Vertex Imbalance for Scale-Free Graphscited by 14
- 2024InstructG2I: Synthesizing Images from Multimodal Attributed Graphscited by 14
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50 most cited of 260 All 260 (JSON)
- 2026Investigating the Effect of k-NN Preprocessing on Developing Graph Neural Networks: A Fairness-Based Perspective27 Sep 2026
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- 2026Effective Graph and Rank-based Contextual Embeddings for Textual and Multimedia Data29 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2026FeLoG: Scalable and Efficient Distributed Graph Embedding with Feedback Loop Mechanism20 Jun 2026
- 2026T-GINEE: A Tensor-Based Multilayer Graph Representation Learning27 May 2026
- 2026GravityGraphSAGE: Link Prediction in Directed Attributed Graphs10 May 2026
- 2026Rethinking Multi-Label Node Classification: Do Tuned Classic GNNs Suffice?2 May 2026
- 2026Disentangled Graph Prompting for Out-Of-Distribution Detection31 Mar 2026
- 2026Subspace Projection Methods for Fast Spectral Embeddings of Evolving Graphs19 Mar 2026
- 2026Leveraging Non-linear Dimension Reduction and Random Walk Co-occurrence for Node Embedding27 Feb 2026
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning4 Feb 2026
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- 2025Metric spaces of walks and Lipschitz duality on graphs27 Aug 2025
- 2025An Efficient Hybridization of Graph Representation Learning and Metaheuristics for the Constrained Incremental Graph Drawing Problem21 Aug 2025
- 2025Multimodal Data Storage and Retrieval for Embodied AI: A Survey19 Aug 2025
- 2025Graph Embedding in the Graph Fractional Fourier Transform Domain4 Aug 2025
- 2025Graph Neural Networks Powered by Encoder Embedding for Improved Node Learning15 Jul 2025
- 2025Graph Collaborative Attention Network for Link Prediction in Knowledge Graphs5 Jul 2025
- 2025On the use of Graphs for Satellite Image Time Series22 May 2025
- 2025Visualization Tasks for Unlabeled Graphs19 Apr 2025
- 2025Network Alignment15 Apr 2025
- 2025On Large-scale Evaluation of Embedding Models for Knowledge Graph Completion11 Apr 2025
- 2025MLKV: Efficiently Scaling up Large Embedding Model Training with Disk-based Key-Value Storage2 Apr 2025
- 2025ffstruc2vec: Flat, Flexible and Scalable Learning of Node Representations from Structural Identities1 Apr 2025
- 2025Deep Cut-informed Graph Embedding and Clustering9 Mar 2025
- 2025A quantum annealing approach to graph node embedding8 Mar 2025
- 2025Predicting clinical outcomes from patient care pathways represented with temporal knowledge graphs28 Feb 2025
- 2024Graph Size-imbalanced Learning with Energy-guided Structural Smoothing23 Dec 2024
- 2024Non-Progressive Influence Maximization in Dynamic Social Networks10 Dec 2024
- 2024GETAE: Graph information Enhanced deep neural NeTwork ensemble ArchitecturE for fake news detection2 Dec 2024
- 2024Correlation-Aware Graph Convolutional Networks for Multi-Label Node Classification26 Nov 2024
- 2024Multistage non-deterministic classification using secondary concept graphs and graph convolutional networks for high-level feature extraction9 Nov 2024
- 2024Incremental IVF Index Maintenance for Streaming Vector Search1 Nov 2024
- 2024Multidimensional Knowledge Graph Embeddings for International Trade Flow Analysis19 Oct 2024
- 2024InstructG2I: Synthesizing Images from Multimodal Attributed Graphs9 Oct 2024
- 2024Improving Disease Comorbidity Prediction Based on Human Interactome with Biologically Supervised Graph Embedding8 Oct 2024
- 2024TopER: Topological Embeddings in Graph Representation Learning2 Oct 2024
- 2024A Survey on Signed Graph Embedding: Methods and Applications5 Sep 2024
- 2024OWL2Vec4OA: Tailoring Knowledge Graph Embeddings for Ontology Alignment12 Aug 2024
- 2024A Structural Feature-Based Approach for Comprehensive Graph Classification10 Aug 2024
- 2024Dual-branch PolSAR Image Classification Based on GraphMAE and Local Feature Extraction8 Aug 2024
50 newest of 260 All 260 (JSON)
- 2021Adversarial Attacks on Knowledge Graph Embeddings via Instance Attribution Methodscited by 16
- 2021Poisoning Knowledge Graph Embeddings via Relation Inference Patternscited by 12
- 2023A Survey of Graph Unlearningcited by 12
- 2022Adversarial Robustness of Representation Learning for Knowledge Graphscited by 0
- 2023A Survey of Graph Unlearning23 Aug 2023
- 2022Adversarial Robustness of Representation Learning for Knowledge Graphs30 Sep 2022
- 2021Poisoning Knowledge Graph Embeddings via Relation Inference Patterns11 Nov 2021
- 2021Adversarial Attacks on Knowledge Graph Embeddings via Instance Attribution Methods4 Nov 2021
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 166
- 2021Graph Learning: A Surveycited by 140
- 2022Deep Clustering: A Comprehensive Surveycited by 78
- 2021SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanismcited by 75
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2022A Survey on Graph Representation Learning Methodscited by 66
- 2021A Survey on Embedding Dynamic Graphscited by 60
- 2021E-GraphSAGE: A Graph Neural Network based Intrusion Detection System for IoTcited by 55
- 2022Instance Relation Graph Guided Source-Free Domain Adaptive Object Detectioncited by 55
- 2021ImGAGN:Imbalanced Network Embedding via Generative Adversarial Graph Networkscited by 51
- 2022Hyperbolic Graph Neural Networks: A Review of Methods and Applicationscited by 40
- 2023MultiGPrompt for Multi-Task Pre-Training and Prompting on Graphscited by 40
12 most cited of 254 All 254 (JSON)
- 2026Investigating the Effect of k-NN Preprocessing on Developing Graph Neural Networks: A Fairness-Based Perspective27 Sep 2026
- 2026Geometric Flow enhanced Graph Coarsening14 Sep 2026
- 2026Effective Graph and Rank-based Contextual Embeddings for Textual and Multimedia Data29 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2026FeLoG: Scalable and Efficient Distributed Graph Embedding with Feedback Loop Mechanism20 Jun 2026
- 2026T-GINEE: A Tensor-Based Multilayer Graph Representation Learning27 May 2026
- 2026GravityGraphSAGE: Link Prediction in Directed Attributed Graphs10 May 2026
- 2026Rethinking Multi-Label Node Classification: Do Tuned Classic GNNs Suffice?2 May 2026
- 2026Disentangled Graph Prompting for Out-Of-Distribution Detection31 Mar 2026
- 2026Subspace Projection Methods for Fast Spectral Embeddings of Evolving Graphs19 Mar 2026
- 2026Leveraging Non-linear Dimension Reduction and Random Walk Co-occurrence for Node Embedding27 Feb 2026
- 2026GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning4 Feb 2026
12 newest of 254 All 254 (JSON)