Graph Prompt Learning: A Comprehensive Survey and Beyond
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Abstract (arXiv)
Artificial General Intelligence (AGI) has revolutionized numerous fields, yet its integration with graph data, a cornerstone in our interconnected world, remains nascent. This paper presents a pioneering survey on the emerging domain of graph prompts in AGI, addressing key challenges and opportunities in harnessing graph data for AGI applications. Despite substantial advancements in AGI across natural language processing and computer vision, the application to graph data is relatively underexplored. This survey critically evaluates the current landscape of AGI in handling graph data, highlighting the distinct challenges in cross-modality, cross-domain, and cross-task applications specific to graphs. Our work is the first to propose a unified framework for understanding graph prompt learning, offering clarity on prompt tokens, token structures, and insertion patterns in the graph domain. We delve into the intrinsic properties of graph prompts, exploring their flexibility, expressiveness, and interplay with existing graph models. A comprehensive taxonomy categorizes over 100 works in this field, aligning them with pre-training tasks across node-level, edge-level, and graph-level objectives. Additionally, we present, ProG, a Python library, and an accompanying website, to support and advance research in graph prompting. The survey culminates in a discussion of current challenges and future directions, offering a roadmap for research in graph prompting within AGI. Through this comprehensive analysis, we aim to catalyze further exploration and practical applications of AGI in graph data, underlining its potential to reshape AGI fields and beyond. ProG and the website can be accessed by urlhttps://github.com/WxxShirley/Awesome-Graph-Prompt, and urlhttps://github.com/sheldonresearch/ProG, respectively.
Key facts. Cited by 61 papers in the map (data through 14 Oct 2026). Builds on 97 of its 127 references that are in the map. First posted on arXiv 28 Nov 2023.
Builds on
97 of 127 references.
References · 97
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- 2018How Powerful are Graph Neural Networks?cited by 4,393
- 2021Prefix-Tuning: Optimizing Continuous Prompts for Generationcited by 3,915
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- 2020Graph Contrastive Learning with Augmentationscited by 1,208
- 2018Deep Graph Infomaxcited by 1,106
- 2019Strategies for Pre-training Graph Neural Networkscited by 971
- 2019How Can We Know What Language Models Know?cited by 959
- 2018Link Prediction Based on Graph Neural Networkscited by 832
- 2023Unifying Large Language Models and Knowledge Graphs: A Roadmapcited by 668
- 2021Multimodal Few-Shot Learning with Frozen Language Modelscited by 661
- 2020Contrastive Multi-View Representation Learning on Graphscited by 652
- 2020Graph Contrastive Learning with Adaptive Augmentationcited by 519
- 2020Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classificationcited by 506
- 2020GCC: Graph Contrastive Coding for Graph Neural Network Pre-Trainingcited by 463
- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 448
- 2023Benchmarking Large Language Models for News Summarizationcited by 445
- 2021Learning How to Ask: Querying LMs with Mixtures of Soft Promptscited by 377
- 2016Learning Convolutional Neural Networks for Graphscited by 314
- 2020Self-supervised Graph Learning for Recommendationcited by 305
- 2020GPT-GNN: Generative Pre-Training of Graph Neural Networkscited by 303
- 2023Exploring the Potential of Large Language Models (LLMs) in Learning on Graphscited by 274
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- 2020Graph Representation Learning via Graphical Mutual Information Maximizationcited by 217
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- 2022Leveraging Large Language Models for Multiple Choice Question Answeringcited by 203
- 2021Adversarial Graph Augmentation to Improve Graph Contrastive Learningcited by 200
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- 2023Talk like a Graph: Encoding Graphs for Large Language Modelscited by 176
- 2021Are Graph Augmentations Necessary? Simple Graph Contrastive Learning for Recommendationcited by 173
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 167
- 2023Knowledge Graph Prompting for Multi-Document Question Answeringcited by 152
- 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 148
- 2023GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learnercited by 132
- 2021Self-supervised Heterogeneous Graph Neural Network with Co-contrastive Learningcited by 130
- 2023MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adaptercited by 128
- 2020Node Similarity Preserving Graph Convolutional Networkscited by 112
50 most cited of 97 All 97 (JSON)
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Citing papers per year: 2024: 29; 2025: 22; 2026: 10.
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- 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 86
- 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 85
- 2024Demystifying Chains, Trees, and Graphs of Thoughtscited by 63
- 2024Non-Homophilic Graph Pre-Training and Prompt Learningcited by 31
- 2024ProG: A Graph Prompt Learning Benchmarkcited by 29
- 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
- 2024RAGraph: A General Retrieval-Augmented Graph Learning Frameworkcited by 24
- 2024Cross-Context Backdoor Attacks against Graph Prompt Learningcited by 14
- 2024Prompt Learning on Temporal Interaction Graphscited by 13
- 2024Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?cited by 13
- 2024GraphEval36K: Benchmarking Coding and Reasoning Capabilities of Large Language Models on Graph Datasetscited by 12
- 2024Replay-and-Forget-Free Graph Class-Incremental Learning: A Task Profiling and Prompting Approachcited by 12
38 more
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2024Intruding with Words: Towards Understanding Graph Injection Attacks at the Text Levelcited by 9
- 2024RELIEF: Reinforcement Learning Empowered Graph Feature Prompt Tuningcited by 9
- 2024Multi-domain Knowledge Graph Collaborative Pre-training and Prompt Tuning for Diverse Downstream Taskscited by 8
- 2024Urban Region Pre-training and Prompting: A Graph-based Approachcited by 8
- 2025GCAL: Adapting Graph Models to Evolving Domain Shiftscited by 8
- 2024Beyond Generalization: A Survey of Out-Of-Distribution Adaptation on Graphscited by 7
- 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learningcited by 6
- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learningcited by 6
- 2024Exploring Prompt Engineering: A Systematic Review with SWOT Analysiscited by 5
- 2024Heterophilic Graph Neural Networks Optimization with Causal Message-passingcited by 4
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learningcited by 4
- 2024All in One: Multi-Task Prompting for Graph Neural Networks (Extended Abstract)cited by 3
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Promptingcited by 3
- 2025A Brain Graph Foundation Model: Pre-Training and Prompt-Tuning across Broad Atlases and Disorderscited by 3
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
- 2024A Unified Graph Selective Prompt Learning for Graph Neural Networkscited by 2
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuningcited by 2
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
- 2025A Survey of Cross-domain Graph Learning: Progress and Future Directionscited by 2
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
- 2025Beyond Single-Granularity Prompts: A Multi-Scale Chain-of-Thought Prompt Learning for Graphcited by 2
- 2026Data-centric Prompt Tuning for Dynamic Graphscited by 2
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encodingcited by 2
- 2024Towards Graph Prompt Learning: A Survey and Beyondcited by 1
- 2024Against Multifaceted Graph Heterogeneity via Asymmetric Federated Prompt Learningcited by 1
- 2025Prompt-Driven Continual Graph Learningcited by 1
- 2025AutoCas: Autoregressive Cascade Predictor in Social Networks via Large Language Modelscited by 1
- 2025Heterogeneous Graph Prompt Learning via Adaptive Weight Pruningcited by 1
- 2025SciTopic: Enhancing Topic Discovery in Scientific Literature through Advanced LLMcited by 1
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Expertscited by 1
- 2026PromptDyG: Test-Time Prompt Adaptation on Dynamic Graphscited by 1
- 2025Rethinking Link Prediction for Directed Graphscited by 0
- 2025DP-GPL: Differentially Private Graph Prompt Learningcited by 0
- 2025Pre-trained Prompt-driven Semi-supervised Local Community Detectioncited by 0
- 2025PLACE: Prompt Learning for Attributed Community Search in Large Graphscited by 0
50 most cited of 61 All 61 (JSON)
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026PromptDyG: Test-Time Prompt Adaptation on Dynamic Graphs22 Jun 2026
- 2026Message Tuning Outshines Graph Prompt Tuning: A Prismatic Space Perspective2 Jun 2026
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts15 May 2026
- 2026CoEvoT: Co-Evolving Chain-of-Thought Prompting for Graph-LLM Reasoning8 May 2026
- 2026Unified Graph Prompt Learning via Low-Rank Graph Message Prompting13 Apr 2026
- 2026A Cross-graph Tuning-free GNN Prompting Framework1 Apr 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026A Graph Prompt Fine-Tuning Method for WSN Spatio-Temporal Correlation Anomaly Detection19 Jan 2026
- 2026Data-centric Prompt Tuning for Dynamic Graphs17 Jan 2026
- 2025Hypergraph Contrastive Learning for both Homophilic and Heterophilic Hypergraphs24 Nov 2025
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering6 Nov 2025
38 more
- 2025Towards Fair Graph Prompting: A Dual-Prompt Mechanism for Mitigating Attribute and Structural Bias27 Oct 2025
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggers26 Oct 2025
- 2025Beyond Single-Granularity Prompts: A Multi-Scale Chain-of-Thought Prompt Learning for Graph10 Oct 2025
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning6 Oct 2025
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Models26 Sep 2025
- 2025GSTBench: A Benchmark Study on the Transferability of Graph Self-Supervised Learning28 Aug 2025
- 2025SciTopic: Enhancing Topic Discovery in Scientific Literature through Advanced LLM28 Aug 2025
- 2025Heterogeneous Graph Prompt Learning via Adaptive Weight Pruning12 Jul 2025
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learning10 Jul 2025
- 2025PLACE: Prompt Learning for Attributed Community Search in Large Graphs7 Jul 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025A Brain Graph Foundation Model: Pre-Training and Prompt-Tuning across Broad Atlases and Disorders31 May 2025
- 2025GCAL: Adapting Graph Models to Evolving Domain Shifts22 May 2025
- 2025Pre-trained Prompt-driven Semi-supervised Local Community Detection18 May 2025
- 2025GraphPrompter: Multi-stage Adaptive Prompt Optimization for Graph In-Context Learning4 May 2025
- 2025A Survey of Cross-domain Graph Learning: Progress and Future Directions14 Mar 2025
- 2025DP-GPL: Differentially Private Graph Prompt Learning13 Mar 2025
- 2025AutoCas: Autoregressive Cascade Predictor in Social Networks via Large Language Models25 Feb 2025
- 2025Prompt-Driven Continual Graph Learning10 Feb 2025
- 2025Rethinking Link Prediction for Directed Graphs8 Feb 2025
- 2024Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?11 Dec 2024
- 2024Heterophilic Graph Neural Networks Optimization with Causal Message-passing21 Nov 2024
- 2024Against Multifaceted Graph Heterogeneity via Asymmetric Federated Prompt Learning4 Nov 2024
- 2024RAGraph: A General Retrieval-Augmented Graph Learning Framework31 Oct 2024
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Prompting29 Oct 2024
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networks17 Oct 2024
- 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoning16 Oct 2024
- 2024Replay-and-Forget-Free Graph Class-Incremental Learning: A Task Profiling and Prompting Approach14 Oct 2024
- 2024Exploring Prompt Engineering: A Systematic Review with SWOT Analysis9 Oct 2024
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysis2 Oct 2024
- 2024Towards Graph Prompt Learning: A Survey and Beyond26 Aug 2024
- 2024Non-Homophilic Graph Pre-Training and Prompt Learning22 Aug 2024
- 2024Urban Region Pre-training and Prompting: A Graph-based Approach12 Aug 2024
- 2024RELIEF: Reinforcement Learning Empowered Graph Feature Prompt Tuning6 Aug 2024
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuning18 Jul 2024
- 2024GraphEval36K: Benchmarking Coding and Reasoning Capabilities of Large Language Models on Graph Datasets23 Jun 2024
- 2024A Unified Graph Selective Prompt Learning for Graph Neural Networks15 Jun 2024
- 2024ProG: A Graph Prompt Learning Benchmark8 Jun 2024
50 newest of 61 All 61 (JSON)
- 2024Demystifying Chains, Trees, and Graphs of Thoughtscited by 63
- 2024GraphEval36K: Benchmarking Coding and Reasoning Capabilities of Large Language Models on Graph Datasetscited by 12
- 2025Beyond Single-Granularity Prompts: A Multi-Scale Chain-of-Thought Prompt Learning for Graphcited by 2
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answeringcited by 0
- 2026CoEvoT: Co-Evolving Chain-of-Thought Prompting for Graph-LLM Reasoningcited by 0
- 2026CoEvoT: Co-Evolving Chain-of-Thought Prompting for Graph-LLM Reasoning8 May 2026
- 2025KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering6 Nov 2025
- 2025Beyond Single-Granularity Prompts: A Multi-Scale Chain-of-Thought Prompt Learning for Graph10 Oct 2025
- 2024GraphEval36K: Benchmarking Coding and Reasoning Capabilities of Large Language Models on Graph Datasets23 Jun 2024
- 2024Demystifying Chains, Trees, and Graphs of Thoughts25 Jan 2024
- 2024Cross-Context Backdoor Attacks against Graph Prompt Learningcited by 14
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuningcited by 2
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuning18 Jul 2024
- 2024Cross-Context Backdoor Attacks against Graph Prompt Learning28 May 2024
- 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 86
- 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 85
- 2024Non-Homophilic Graph Pre-Training and Prompt Learningcited by 31
- 2024ProG: A Graph Prompt Learning Benchmarkcited by 29
- 2024A Prompt-Based Knowledge Graph Foundation Model for Universal In-Context Reasoningcited by 25
- 2024Prompt Learning on Temporal Interaction Graphscited by 13
- 2024Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?cited by 13
- 2024Replay-and-Forget-Free Graph Class-Incremental Learning: A Task Profiling and Prompting Approachcited by 12
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2024Intruding with Words: Towards Understanding Graph Injection Attacks at the Text Levelcited by 9
12 most cited of 52 All 52 (JSON)
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026PromptDyG: Test-Time Prompt Adaptation on Dynamic Graphs22 Jun 2026
- 2026Message Tuning Outshines Graph Prompt Tuning: A Prismatic Space Perspective2 Jun 2026
- 2026CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts15 May 2026
- 2026Unified Graph Prompt Learning via Low-Rank Graph Message Prompting13 Apr 2026
- 2026A Cross-graph Tuning-free GNN Prompting Framework1 Apr 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026A Graph Prompt Fine-Tuning Method for WSN Spatio-Temporal Correlation Anomaly Detection19 Jan 2026
- 2026Data-centric Prompt Tuning for Dynamic Graphs17 Jan 2026
- 2025Hypergraph Contrastive Learning for both Homophilic and Heterophilic Hypergraphs24 Nov 2025
- 2025Towards Fair Graph Prompting: A Dual-Prompt Mechanism for Mitigating Attribute and Structural Bias27 Oct 2025
- 2025Cross-Paradigm Graph Backdoor Attacks with Promptable Subgraph Triggers26 Oct 2025
12 newest of 52 All 52 (JSON)