Graph Convolutional Networks with EigenPooling
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Abstract (arXiv)
Graph neural networks, which generalize deep neural network models to graph structured data, have attracted increasing attention in recent years. They usually learn node representations by transforming, propagating and aggregating node features and have been proven to improve the performance of many graph related tasks such as node classification and link prediction. To apply graph neural networks for the graph classification task, approaches to generate the textitgraph representation from node representations are demanded. A common way is to globally combine the node representations. However, rich structural information is overlooked. Thus a hierarchical pooling procedure is desired to preserve the graph structure during the graph representation learning. There are some recent works on hierarchically learning graph representation analogous to the pooling step in conventional convolutional neural (CNN) networks. However, the local structural information is still largely neglected during the pooling process. In this paper, we introduce a pooling operator pooling based on graph Fourier transform, which can utilize the node features and local structures during the pooling process. We then design pooling layers based on the pooling operator, which are further combined with traditional GCN convolutional layers to form a graph neural network framework m for graph classification. Theoretical analysis is provided to understand pooling from both local and global perspectives. Experimental results of the graph classification task on 6 commonly used benchmarks demonstrate the effectiveness of the proposed framework.
Key facts. Cited by 94 papers in the map (data through 14 Oct 2026). First posted on arXiv 30 Apr 2019.
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Citing papers per year: 2021: 23; 2022: 20; 2023: 20; 2024: 14; 2025: 10; 2026: 7.
94 papers.
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- 2022Graph neural networks for materials science and chemistrycited by 182
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 167
- 2021Accurate Learning of Graph Representations with Graph Multiset Poolingcited by 120
- 2023Machine Learning for Synthetic Data Generation: A Reviewcited by 120
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2021SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanismcited by 75
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2021Understanding Pooling in Graph Neural Networkscited by 69
- 2021Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Futurecited by 67
- 2022Structural Entropy Guided Graph Hierarchical Poolingcited by 62
- 2022A Survey on Graph Neural Networks and Graph Transformers in Computer Vision: A Task-Oriented Perspectivecited by 56
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
38 more
- 2023Generalized Graph Prompt: Toward a Unification of Pre-Training and Downstream Tasks on Graphscited by 39
- 2021Pooling Architecture Search for Graph Classificationcited by 36
- 2021Graph Domain Adaptation: A Generative Viewcited by 35
- 2022Higher-order Clustering and Pooling for Graph Neural Networkscited by 26
- 2024AdaFGL: A New Paradigm for Federated Node Classification with Topology Heterogeneitycited by 25
- 2021Privacy-Preserving Representation Learning on Graphs: A Mutual Information Perspectivecited by 23
- 2021Graph Transformer Networks: Learning Meta-path Graphs to Improve GNNscited by 22
- 2022Model-Agnostic Augmentation for Accurate Graph Classificationcited by 21
- 2021Bridging the Gap between Spatial and Spectral Domains: A Unified Framework for Graph Neural Networkscited by 19
- 2022Test-Time Training for Graph Neural Networkscited by 17
- 2021Hierarchical Adaptive Pooling by Capturing High-order Dependency for Graph Representation Learningcited by 15
- 2022Projective Ranking-based GNN Evasion Attackscited by 14
- 2021Learnable Structural Semantic Readout for Graph Classificationcited by 13
- 2024EvGNN: An Event-driven Graph Neural Network Accelerator for Edge Visioncited by 13
- 2024Tensor-view Topological Graph Neural Networkcited by 12
- 2024LightDiC: A Simple yet Effective Approach for Large-scale Digraph Representation Learningcited by 11
- 2023Neural Atoms: Propagating Long-range Interaction in Molecular Graphs through Efficient Communication Channelcited by 10
- 2024A Graph is Worth K Words: Euclideanizing Graph using Pure Transformercited by 10
- 2023Topological Pooling on Graphscited by 9
- 2024Subgraph-level Universal Prompt Tuningcited by 9
- 2024Boosting Graph Pooling with Persistent Homologycited by 9
- 2021An Adaptive Graph Pre-training Framework for Localized Collaborative Filteringcited by 8
- 2022Revisiting Adversarial Attacks on Graph Neural Networks for Graph Classificationcited by 8
- 2022PatchGT: Transformer over Non-trainable Clusters for Learning Graph Representationscited by 8
- 2023AutoTransfer: AutoML with Knowledge Transfer -- An Application to Graph Neural Networkscited by 8
- 2023Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalizationcited by 8
- 2025A Comprehensive Data-centric Overview of Federated Graph Learningcited by 7
- 2021Diversified Multiscale Graph Learning with Graph Self-Correctioncited by 6
- 2021Query Driven-Graph Neural Networks for Community Search: From Non-Attributed, Attributed, to Interactive Attributedcited by 6
- 2021Localized Graph Collaborative Filteringcited by 6
- 2022Generalizing Downsampling from Regular Data to Graphscited by 6
- 2023State of the Art and Potentialities of Graph-level Learningcited by 6
- 2023Knowledge-augmented Graph Machine Learning for Drug Discovery: A Surveycited by 6
- 2022Pooling Strategies for Simplicial Convolutional Networkscited by 5
- 2023Adaptive Hierarchical SpatioTemporal Network for Traffic Forecastingcited by 5
- 2021HyperSF: Spectral Hypergraph Coarsening via Flow-based Local Clusteringcited by 4
- 2023On Exploring Node-feature and Graph-structure Diversities for Node Drop Graph Poolingcited by 4
- 2023UniG-Encoder: A Universal Feature Encoder for Graph and Hypergraph Node Classificationcited by 4
50 most cited of 94 All 94 (JSON)
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026Geometric Flow enhanced Graph Coarsening14 Sep 2026
- 2026TopoFormer: Topology Meets Attention for Graph Learning30 Jul 2026
- 2026MPP-GNN: Subject-Adaptive Community Detection for fMRI-Based Alzheimer's Disease Classification29 Jul 2026
- 2026Hierarchical Pooling for Sheaf Neural Networks18 Jun 2026
- 2026Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation8 May 2026
- 2026Learning from Historical Activations in Graph Neural Networks3 Jan 2026
- 2025Torch Geometric Pool: the PyTorch library for pooling in Graph Neural Networks14 Dec 2025
- 2025Generative Dynamic Graph Representation Learning for Conspiracy Spoofing Detection7 Oct 2025
- 2025ICEPool: Enhancing Graph Pooling Networks with Inter-cluster Connectivity5 Oct 2025
- 2025Adaptive Canonicalization with Application to Invariant Anisotropic Geometric Networks29 Sep 2025
- 2025BuildSTG: A Multi-building Energy Load Forecasting Method using Spatio-Temporal Graph Neural Network28 Jul 2025
38 more
- 2025A Comprehensive Data-centric Overview of Federated Graph Learning22 Jul 2025
- 2025Convexified Message-Passing Graph Neural Networks23 May 2025
- 2025Rhomboid Tiling for Geometric Graph Deep Learning14 May 2025
- 2025BioX-CPath: Biologically-driven Explainable Diagnostics for Multistain IHC Computational Pathology26 Mar 2025
- 2025BN-Pool: Bayesian Nonparametric Pooling for Graphs16 Jan 2025
- 2024Graph Size-imbalanced Learning with Energy-guided Structural Smoothing23 Dec 2024
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Survey28 Nov 2024
- 2024GSpect: Spectral Filtering for Cross-Scale Graph Classification31 Aug 2024
- 2024Equivariant Machine Learning on Graphs with Nonlinear Spectral Filters3 Jun 2024
- 2024Hi-GMAE: Hierarchical Graph Masked Autoencoders17 May 2024
- 2024EvGNN: An Event-driven Graph Neural Network Accelerator for Edge Vision30 Apr 2024
- 2024Boosting Graph Pooling with Persistent Homology26 Feb 2024
- 2024Subgraph-level Universal Prompt Tuning16 Feb 2024
- 2024A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer4 Feb 2024
- 2024Tensor-view Topological Graph Neural Network22 Jan 2024
- 2024LightDiC: A Simple yet Effective Approach for Large-scale Digraph Representation Learning22 Jan 2024
- 2024AdaFGL: A New Paradigm for Federated Node Classification with Topology Heterogeneity22 Jan 2024
- 2024On the Power of Graph Neural Networks and Feature Augmentation Strategies to Classify Social Networks11 Jan 2024
- 2024Saliency-Aware Regularized Graph Neural Network1 Jan 2024
- 2023Generalized Graph Prompt: Toward a Unification of Pre-Training and Downstream Tasks on Graphs26 Nov 2023
- 2023A Novel Normalized-Cut Solver with Nearest Neighbor Hierarchical Initialization26 Nov 2023
- 2023Everybody Needs a Little HELP: Explaining Graphs via Hierarchical Concepts25 Nov 2023
- 2023Careful Selection and Thoughtful Discarding: Graph Explicit Pooling Utilizing Discarded Nodes21 Nov 2023
- 2023Neural Atoms: Propagating Long-range Interaction in Molecular Graphs through Efficient Communication Channel2 Nov 2023
- 2023DyExplainer: Explainable Dynamic Graph Neural Networks25 Oct 2023
- 2023Edge-aware Hard Clustering Graph Pooling for Brain Imaging23 Aug 2023
- 2023UniG-Encoder: A Universal Feature Encoder for Graph and Hypergraph Node Classification3 Aug 2023
- 2023On Exploring Node-feature and Graph-structure Diversities for Node Drop Graph Pooling22 Jun 2023
- 2023Adaptive Hierarchical SpatioTemporal Network for Traffic Forecasting15 Jun 2023
- 2023Chemellia: An Ecosystem for Atomistic Scientific Machine Learning19 May 2023
- 2023Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalization17 May 2023
- 2023A Comprehensive Survey on Deep Graph Representation Learning11 Apr 2023
- 2023Topological Pooling on Graphs25 Mar 2023
- 2023AutoTransfer: AutoML with Knowledge Transfer -- An Application to Graph Neural Networks14 Mar 2023
- 2023Drugs Resistance Analysis from Scarce Health Records via Multi-task Graph Representation22 Feb 2023
- 2023Knowledge-augmented Graph Machine Learning for Drug Discovery: A Survey16 Feb 2023
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networks16 Feb 2023
- 2023Machine Learning for Synthetic Data Generation: A Review8 Feb 2023
50 newest of 94 All 94 (JSON)
- 2022Graph neural networks for materials science and chemistrycited by 182
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 167
- 2021Accurate Learning of Graph Representations with Graph Multiset Poolingcited by 120
- 2023Machine Learning for Synthetic Data Generation: A Reviewcited by 120
- 2021GraphEBM: Molecular Graph Generation with Energy-Based Modelscited by 85
- 2021SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanismcited by 75
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2021Understanding Pooling in Graph Neural Networkscited by 69
- 2021Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Futurecited by 67
- 2022Structural Entropy Guided Graph Hierarchical Poolingcited by 62
- 2022A Survey on Graph Neural Networks and Graph Transformers in Computer Vision: A Task-Oriented Perspectivecited by 56
- 2022Graph Pooling for Graph Neural Networks: Progress, Challenges, and Opportunitiescited by 52
12 most cited of 94 All 94 (JSON)
- 2026GeoGAE: Scalable Graph-Level Autoencoding via Hyperball Cloud Representations28 Sep 2026
- 2026Geometric Flow enhanced Graph Coarsening14 Sep 2026
- 2026TopoFormer: Topology Meets Attention for Graph Learning30 Jul 2026
- 2026MPP-GNN: Subject-Adaptive Community Detection for fMRI-Based Alzheimer's Disease Classification29 Jul 2026
- 2026Hierarchical Pooling for Sheaf Neural Networks18 Jun 2026
- 2026Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation8 May 2026
- 2026Learning from Historical Activations in Graph Neural Networks3 Jan 2026
- 2025Torch Geometric Pool: the PyTorch library for pooling in Graph Neural Networks14 Dec 2025
- 2025Generative Dynamic Graph Representation Learning for Conspiracy Spoofing Detection7 Oct 2025
- 2025ICEPool: Enhancing Graph Pooling Networks with Inter-cluster Connectivity5 Oct 2025
- 2025Adaptive Canonicalization with Application to Invariant Anisotropic Geometric Networks29 Sep 2025
- 2025BuildSTG: A Multi-building Energy Load Forecasting Method using Spatio-Temporal Graph Neural Network28 Jul 2025
12 newest of 94 All 94 (JSON)