mlsanityData to 7 Oct 2026

LLMs as Zero-shot Graph Learners: Alignment of GNN Representations with LLM Token Embeddings

arXiv 2408.14512 ↗First posted 25 Aug 2024cs.LG cs.AI cs.CLcited by 60

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Abstract (arXiv)

Zero-shot graph machine learning, especially with graph neural networks (GNNs), has garnered significant interest due to the challenge of scarce labeled data. While methods like self-supervised learning and graph prompt learning have been extensively explored, they often rely on fine-tuning with task-specific labels, limiting their effectiveness in zero-shot scenarios. Inspired by the zero-shot capabilities of instruction-fine-tuned large language models (LLMs), we introduce a novel framework named Token Embedding-Aligned Graph Language Model (TEA-GLM) that leverages LLMs as cross-dataset and cross-task zero-shot learners for graph machine learning. Concretely, we pretrain a GNN, aligning its representations with token embeddings of an LLM. We then train a linear projector that transforms the GNN's representations into a fixed number of graph token embeddings without tuning the LLM. A unified instruction is designed for various graph tasks at different levels, such as node classification (node-level) and link prediction (edge-level). These design choices collectively enhance our method's effectiveness in zero-shot learning, setting it apart from existing methods. Experiments show that our graph token embeddings help the LLM predictor achieve state-of-the-art performance on unseen datasets and tasks compared to other methods using LLMs as predictors.

Key facts. Cited by 60 papers in the map (data through 7 Oct 2026). Builds on 44 of its 52 references that are in the map. First posted on arXiv 25 Aug 2024.

Builds on

44 of 52 references.

References · 44

  1. 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,204
  2. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  3. 2017Graph Attention Networkscited by 8,854
  4. 2017Inductive Representation Learning on Large Graphscited by 6,284
  5. 2018How Powerful are Graph Neural Networks?cited by 4,355
  6. 2021Finetuned Language Models Are Zero-Shot Learnerscited by 3,747
  7. 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,148
  8. 2018Deep Graph Infomaxcited by 1,101
  9. 2020Contrastive Multi-View Representation Learning on Graphscited by 651
  10. 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 583
  11. 2019Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networkscited by 540
  12. 2020Deep Graph Contrastive Representation Learningcited by 535
32 more
  1. 2019Graph Transformer Networkscited by 520
  2. 2020Graph Contrastive Learning with Adaptive Augmentationcited by 519
  3. 2020GCC: Graph Contrastive Coding for Graph Neural Network Pre-Trainingcited by 461
  4. 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
  5. 2021Graph Contrastive Learning Automatedcited by 287
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  8. 2023One for All: Towards Training One Graph Model for All Classification Taskscited by 239
  9. 2023GraphGPT: Graph Instruction Tuning for Large Language Modelscited by 223
  10. 2023Language is All a Graph Needscited by 219
  11. 2023GPT4Graph: Can Large Language Models Understand Graph Structured Data ? An Empirical Evaluation and Benchmarkingcited by 209
  12. 2023NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classificationcited by 207
  13. 2024LLaGA: Large Language and Graph Assistantcited by 177
  14. 2022SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentationcited by 171
  15. 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 166
  16. 2023TEST: Text Prototype Aligned Embedding to Activate LLM's Ability for Time Seriescited by 165
  17. 2021Graph-less Neural Networks: Teaching Old MLPs New Tricks via Distillationcited by 151
  18. 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 147
  19. 2023Harnessing Explanations: LLM-to-LM Interpreter for Enhanced Text-Attributed Graph Representation Learningcited by 132
  20. 2023GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learnercited by 131
  21. 2018Large-Scale Learnable Graph Convolutional Networkscited by 113
  22. 2023DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusioncited by 85
  23. 2024OpenGraph: Towards Open Graph Foundation Modelscited by 75
  24. 2023Label-free Node Classification on Graphs with Large Language Models (LLMS)cited by 72
  25. 2024GraphTranslator: Aligning Graph Model to Large Language Model for Open-ended Taskscited by 63
  26. 2023Augmenting Low-Resource Text Classification with Graph-Grounded Pre-training and Promptingcited by 62
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  28. 2020L2-GCN: Layer-Wise and Learned Efficient Training of Graph Convolutional Networkscited by 48
  29. 2022Multi-task Self-supervised Graph Neural Networks Enable Stronger Task Generalizationcited by 35
  30. 2023Evaluating Large Language Models on Graphs: Performance Insights and Comparative Analysiscited by 35
  31. 2022Geometric Knowledge Distillation: Topology Compression for Graph Neural Networkscited by 22
  32. 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learningcited by 13

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 2; 2025: 33; 2026: 25.

60 papers.

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  1. 2026Graph is a Substrate Across Data Modalitiescited by 13
  2. 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
  3. 2025Model Generalization on Text Attribute Graphs: Principles with Large Language Modelscited by 8
  4. 2025FedBook: A Unified Federated Graph Foundation Codebook with Intra-domain and Inter-domain Knowledge Modelingcited by 8
  5. 2025A Comprehensive Data-centric Overview of Federated Graph Learningcited by 7
  6. 2025UniGTE: Unified Graph-Text Encoding for Zero-Shot Generalization across Graph Tasks and Domainscited by 7
  7. 2026Toward Graph-Tokenizing Large Language Models with Reconstructive Graph Instruction Tuningcited by 7
  8. 2025Graph-KV: Breaking Sequence via Injecting Structural Biases into Large Language Modelscited by 6
  9. 2025Rethinking Explainability in the Era of Multimodal AIcited by 6
  10. 2025From Nodes to Narratives: Explaining Graph Neural Networks with LLMs and Graph Contextcited by 6
  11. 2025TrustGLM: Evaluating the Robustness of GraphLLMs Against Prompt, Text, and Structure Attackscited by 5
  12. 2025Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applicationscited by 5
38 more
  1. 2025GraphChain: Large Language Models for Large-scale Graph Analysis via Tool Chainingcited by 5
  2. 2025Can Large Language Models Infer Causal Relationships from Real-World Text?cited by 4
  3. 2026GNN-as-Judge: Unleashing the Power of LLMs for Graph Learning with GNN Feedbackcited by 4
  4. 2025Integrating Structural and Semantic Signals in Text-Attributed Graphs with BiGTexcited by 3
  5. 2025InfoNCE is a Free Lunch for Semantically guided Graph Contrastive Learningcited by 3
  6. 2025Dynamic Bundling with Large Language Models for Zero-Shot Inference on Text-Attributed Graphscited by 3
  7. 2025Generalizable LLM Learning of Graph Synthetic Data with Post-training Alignmentcited by 3
  8. 2025Efficient Knowledge Probing of Large Language Models by Adapting Pre-trained Embeddingscited by 3
  9. 2025When Structure Doesn't Help: LLMs Do Not Read Text-Attributed Graphs as Effectively as We Expectedcited by 3
  10. 2024Enhancing ID-based Recommendation with Large Language Modelscited by 2
  11. 2024Towards Data-centric Machine Learning on Directed Graphs: a Surveycited by 2
  12. 2025A Survey of Cross-domain Graph Learning: Progress and Future Directionscited by 2
  13. 2025A Graph Talks, But Who's Listening? Rethinking Evaluations for Graph-Language Modelscited by 2
  14. 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
  15. 2026Rethinking Federated Graph Foundation Models: A Graph-Language Alignment-based Approachcited by 2
  16. 2026<SOG_k>: One LLM Token for Explicit Graph Structural Understandingcited by 2
  17. 2026Revisiting Graph-Tokenizing Large Language Models: A Systematic Evaluation of Graph Token Understandingcited by 2
  18. 2025Relation-Aware Graph Foundation Modelcited by 1
  19. 2025Ontology-Enhanced Knowledge Graph Completion using Large Language Modelscited by 1
  20. 2025ReaLM: Residual Quantization Bridging Knowledge Graph Embeddings and Large Language Modelscited by 1
  21. 2025Preference-driven Knowledge Distillation for Few-shot Node Classificationcited by 1
  22. 2025H4G: Unlocking Faithful Inference for Zero-Shot Graph Learning in Hyperbolic Spacecited by 1
  23. 2025GLOW: Graph-Language Co-Encoding for Agentic Workflow Performance Predictioncited by 1
  24. 2025Temporal Visual Semantics-Induced Human Motion Understanding with Large Language Modelscited by 1
  25. 2026Beyond One-Size-Fits-All: Adaptive Subgraph Denoising for Zero-Shot Graph Learning with Large Language Modelscited by 1
  26. 2026Unifying biomedical knowledge in a modern multimodal graphcited by 1
  27. 2025H2GFM: Towards unifying Homogeneity and Heterogeneity on Text-Attributed Graphscited by 0
  28. 2025Entity Representation Learning Through Onsite-Offsite Graph for Pinterest Adscited by 0
  29. 2025A Large Language Model Powered Integrated Circuit Footprint Geometry Understandingcited by 0
  30. 2025Struc-EMB: The Potential of Structure-Aware Encoding in Language Embeddingscited by 0
  31. 2025GraphShaper: Geometry-aware Alignment for Improving Transfer Learning in Text-Attributed Graphscited by 0
  32. 2026Detecting Miscitation on the Scholarly Web through LLM-Augmented Text-Rich Graph Learningcited by 0
  33. 2026Exploring Concept Subspace for Self-explainable Text-Attributed Graph Learningcited by 0
  34. 2026A Unified Graph Language Model for Multi-Domain Multi-Task Graph Alignment Instruction Tuningcited by 0
  35. 2026KoRe: Compact Knowledge Representations for Large Language Modelscited by 0
  36. 2026Hypergraph as Languagecited by 0
  37. 2026When Graph Tokens Sink: A Mechanistic Analysis of Graph Language Modelscited by 0
  38. 2026ERAlign: Energy-based Representation Alignment of GNNs and LLMs on Text-attributed Graphscited by 0

50 most cited of 60 All 60 (JSON)

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  1. 2024Enhancing Graph Neural Networks with Limited Labeled Data by Actively Distilling Knowledge from Large Language Models
  2. 2024GL-Fusion: Rethinking the Combination of Graph Neural Network and Large Language model
  3. 2025Exploring Graph Learning Tasks with Pure LLMs: A Comprehensive Benchmark and Investigation
  4. 2025Scalability Matters: Overcoming Challenges in InstructGLM with Similarity-Degree-Based Sampling
  5. 2026Teaching LLMs to See Graphs: Unifying Text and Structural Reasoning
  6. 2024Bootstrapping Heterogeneous Graph Representation Learning via Large Language Models: A Generalized Approach
  7. 2024Graph Machine Learning in the Era of Large Language Models (LLMs)
  8. 2025A Zero-shot Learning Method Based on Large Language Models for Multi-modal Knowledge Graph Embedding