ProG: A Graph Prompt Learning Benchmark
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Abstract (arXiv)
Artificial general intelligence on graphs has shown significant advancements across various applications, yet the traditional 'Pre-train & Fine-tune' paradigm faces inefficiencies and negative transfer issues, particularly in complex and few-shot settings. Graph prompt learning emerges as a promising alternative, leveraging lightweight prompts to manipulate data and fill the task gap by reformulating downstream tasks to the pretext. However, several critical challenges still remain: how to unify diverse graph prompt models, how to evaluate the quality of graph prompts, and to improve their usability for practical comparisons and selection. In response to these challenges, we introduce the first comprehensive benchmark for graph prompt learning. Our benchmark integrates SIX pre-training methods and FIVE state-of-the-art graph prompt techniques, evaluated across FIFTEEN diverse datasets to assess performance, flexibility, and efficiency. We also present 'ProG', an easy-to-use open-source library that streamlines the execution of various graph prompt models, facilitating objective evaluations. Additionally, we propose a unified framework that categorizes existing graph prompt methods into two main approaches: prompts as graphs and prompts as tokens. This framework enhances the applicability and comparison of graph prompt techniques. The code is available at: https://github.com/sheldonresearch/ProG.
Key facts. Cited by 29 papers in the map (data through 7 Oct 2026). Builds on 46 of its 72 references that are in the map. First posted on arXiv 8 Jun 2024.
Builds on
46 of 72 references.
References · 46
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34 more
- 2020Graph Contrastive Learning with Adaptive Augmentationcited by 519
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- 2022Rethinking Graph Neural Networks for Anomaly Detectioncited by 185
- 2022SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentationcited by 171
- 2021Training Graph Neural Networks with 1000 Layerscited by 169
- 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 166
- 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 147
- 2020Node Similarity Preserving Graph Convolutional Networkscited by 112
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- 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
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- 2021Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learningcited by 70
- 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
- 2023GSLB: The Graph Structure Learning Benchmarkcited by 49
- 2023Virtual Node Tuning for Few-shot Node Classificationcited by 46
- 2023Can Large Language Models Empower Molecular Property Prediction?cited by 43
- 2023SGL-PT: A Strong Graph Learner with Graph Prompt Tuningcited by 35
- 2022Self-supervised Hypergraph Representation Learning for Sociological Analysiscited by 27
- 2023SEGNO: Generalizing Equivariant Graph Neural Networks with Physical Inductive Biasescited by 27
- 2022Self-Supervised Representation Learning via Latent Graph Predictioncited by 22
- 2022FAITH: Few-Shot Graph Classification with Hierarchical Task Graphscited by 22
- 2023GraphPro: Graph Pre-training and Prompt Learning for Recommendationcited by 17
- 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learningcited by 13
- 2024Prompt Learning on Temporal Interaction Graphscited by 13
- 2023ULTRA-DP: Unifying Graph Pre-training with Multi-task Graph Dual Promptcited by 12
- 2024Protein Multimer Structure Prediction via Prompt Learningcited by 11
- 2024Weakly Supervised Anomaly Detection via Knowledge-Data Alignmentcited by 10
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Citing papers per year: 2024: 6; 2025: 12; 2026: 11.
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- 2024GLBench: A Comprehensive Benchmark for Graph with Large Language Modelscited by 36
- 2024UniGAD: Unifying Multi-level Graph Anomaly Detectioncited by 13
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
- 2025Exploring Graph Learning Tasks with Pure LLMs: A Comprehensive Benchmark and Investigationcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2025GraphThought: Graph Combinatorial Optimization with Thought Generationcited by 9
- 2024Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphscited by 6
- 2025Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applicationscited by 5
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learningcited by 4
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Promptingcited by 3
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
17 more
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learningcited by 1
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encodingcited by 1
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuningcited by 1
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignmentcited by 1
- 2025DP-GPL: Differentially Private Graph Prompt Learningcited by 0
- 2025Freeze, Prompt, and Adapt: A Framework for Source-free Unsupervised GNN Promptingcited by 0
- 2025Aligning the Spectrum: Hybrid Graph Pre-training and Prompt Tuning across Homophily and Heterophilycited by 0
- 2025GSTBench: A Benchmark Study on the Transferability of Graph Self-Supervised Learningcited by 0
- 2026GP2F: Cross-Domain Graph Prompting with Adaptive Fusion of Pre-trained Graph Neural Networkscited by 0
- 2026Scalable and Adaptive Parallel Training of Graph Transformer on Large Graphscited by 0
- 2026Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approachcited by 0
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Modelscited by 0
- 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transportcited by 0
- 2026Signed Graph Pre-Training and Prompt Learningcited by 0
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Promptingcited by 0
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transport20 Sep 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuning14 May 2026
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Models13 May 2026
- 2026Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach11 May 2026
- 2026Scalable and Adaptive Parallel Training of Graph Transformer on Large Graphs17 Apr 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026GP2F: Cross-Domain Graph Prompting with Adaptive Fusion of Pre-trained Graph Neural Networks12 Feb 2026
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learning6 Jan 2026
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning5 Nov 2025
17 more
- 2025Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applications24 Oct 2025
- 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning6 Oct 2025
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Models26 Sep 2025
- 2025GSTBench: A Benchmark Study on the Transferability of Graph Self-Supervised Learning28 Aug 2025
- 2025Aligning the Spectrum: Hybrid Graph Pre-training and Prompt Tuning across Homophily and Heterophily15 Aug 2025
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learning10 Jul 2025
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directions10 Jun 2025
- 2025Freeze, Prompt, and Adapt: A Framework for Source-free Unsupervised GNN Prompting22 May 2025
- 2025DP-GPL: Differentially Private Graph Prompt Learning13 Mar 2025
- 2025Exploring Graph Learning Tasks with Pure LLMs: A Comprehensive Benchmark and Investigation26 Feb 2025
- 2025GraphThought: Graph Combinatorial Optimization with Thought Generation17 Feb 2025
- 2024UniGAD: Unifying Multi-level Graph Anomaly Detection10 Nov 2024
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Prompting29 Oct 2024
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networks17 Oct 2024
- 2024Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphs16 Oct 2024
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysis2 Oct 2024
- 2024GLBench: A Comprehensive Benchmark for Graph with Large Language Models10 Jul 2024
- 2024GLBench: A Comprehensive Benchmark for Graph with Large Language Modelscited by 36
- 2024UniGAD: Unifying Multi-level Graph Anomaly Detectioncited by 13
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
- 2025Exploring Graph Learning Tasks with Pure LLMs: A Comprehensive Benchmark and Investigationcited by 11
- 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
- 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
- 2024Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphscited by 6
- 2025Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applicationscited by 5
- 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learningcited by 4
- 2024Reliable and Compact Graph Fine-tuning via GraphSparse Promptingcited by 3
- 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
- 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
12 most cited of 28 All 28 (JSON)
- 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Prompting26 Sep 2026
- 2026Signed Graph Pre-Training and Prompt Learning22 Sep 2026
- 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transport20 Sep 2026
- 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment13 Jul 2026
- 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuning14 May 2026
- 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Models13 May 2026
- 2026Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach11 May 2026
- 2026Scalable and Adaptive Parallel Training of Graph Transformer on Large Graphs17 Apr 2026
- 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encoding13 Feb 2026
- 2026GP2F: Cross-Domain Graph Prompting with Adaptive Fusion of Pre-trained Graph Neural Networks12 Feb 2026
- 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learning6 Jan 2026
- 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuning5 Nov 2025
12 newest of 28 All 28 (JSON)