mlsanityData to 7 Oct 2026

ProG: A Graph Prompt Learning Benchmark

arXiv 2406.05346 ↗First posted 8 Jun 2024cs.LGcited by 29

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Abstract (arXiv)

Artificial general intelligence on graphs has shown significant advancements across various applications, yet the traditional 'Pre-train & Fine-tune' paradigm faces inefficiencies and negative transfer issues, particularly in complex and few-shot settings. Graph prompt learning emerges as a promising alternative, leveraging lightweight prompts to manipulate data and fill the task gap by reformulating downstream tasks to the pretext. However, several critical challenges still remain: how to unify diverse graph prompt models, how to evaluate the quality of graph prompts, and to improve their usability for practical comparisons and selection. In response to these challenges, we introduce the first comprehensive benchmark for graph prompt learning. Our benchmark integrates SIX pre-training methods and FIVE state-of-the-art graph prompt techniques, evaluated across FIFTEEN diverse datasets to assess performance, flexibility, and efficiency. We also present 'ProG', an easy-to-use open-source library that streamlines the execution of various graph prompt models, facilitating objective evaluations. Additionally, we propose a unified framework that categorizes existing graph prompt methods into two main approaches: prompts as graphs and prompts as tokens. This framework enhances the applicability and comparison of graph prompt techniques. The code is available at: https://github.com/sheldonresearch/ProG.

Key facts. Cited by 29 papers in the map (data through 7 Oct 2026). Builds on 46 of its 72 references that are in the map. First posted on arXiv 8 Jun 2024.

Builds on

46 of 72 references.

References · 46

  1. 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,160
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  3. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  4. 2017Graph Attention Networkscited by 8,854
  5. 2017Inductive Representation Learning on Large Graphscited by 6,284
  6. 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,414
  7. 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,148
  8. 2020Graph Contrastive Learning with Augmentationscited by 1,203
  9. 2018Deep Graph Infomaxcited by 1,101
  10. 2019Strategies for Pre-training Graph Neural Networkscited by 964
  11. 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 821
  12. 2019DeepGCNs: Can GCNs Go as Deep as CNNs?cited by 527
34 more
  1. 2020Graph Contrastive Learning with Adaptive Augmentationcited by 519
  2. 2020Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classificationcited by 500
  3. 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
  4. 2019InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximizationcited by 441
  5. 2022Rethinking Graph Neural Networks for Anomaly Detectioncited by 185
  6. 2022SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentationcited by 171
  7. 2021Training Graph Neural Networks with 1000 Layerscited by 169
  8. 2023GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networkscited by 166
  9. 2023All in One: Multi-task Prompting for Graph Neural Networkscited by 147
  10. 2020Node Similarity Preserving Graph Convolutional Networkscited by 112
  11. 2021InfoGCL: Information-Aware Graph Contrastive Learningcited by 105
  12. 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
  13. 2023PRODIGY: Enabling In-context Learning Over Graphscited by 97
  14. 2023A Survey of Graph Meets Large Language Model: Progress and Future Directionscited by 84
  15. 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 84
  16. 2024ZeroG: Investigating Cross-dataset Zero-shot Transferability in Graphscited by 83
  17. 2021AFEC: Active Forgetting of Negative Transfer in Continual Learningcited by 73
  18. 2019DeepGCNs: Making GCNs Go as Deep as CNNscited by 72
  19. 2021Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learningcited by 70
  20. 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
  21. 2023GSLB: The Graph Structure Learning Benchmarkcited by 49
  22. 2023Virtual Node Tuning for Few-shot Node Classificationcited by 46
  23. 2023Can Large Language Models Empower Molecular Property Prediction?cited by 43
  24. 2023SGL-PT: A Strong Graph Learner with Graph Prompt Tuningcited by 35
  25. 2022Self-supervised Hypergraph Representation Learning for Sociological Analysiscited by 27
  26. 2023SEGNO: Generalizing Equivariant Graph Neural Networks with Physical Inductive Biasescited by 27
  27. 2022Self-Supervised Representation Learning via Latent Graph Predictioncited by 22
  28. 2022FAITH: Few-Shot Graph Classification with Hierarchical Task Graphscited by 22
  29. 2023GraphPro: Graph Pre-training and Prompt Learning for Recommendationcited by 17
  30. 2022Wiener Graph Deconvolutional Network Improves Graph Self-Supervised Learningcited by 13
  31. 2024Prompt Learning on Temporal Interaction Graphscited by 13
  32. 2023ULTRA-DP: Unifying Graph Pre-training with Multi-task Graph Dual Promptcited by 12
  33. 2024Protein Multimer Structure Prediction via Prompt Learningcited by 11
  34. 2024Weakly Supervised Anomaly Detection via Knowledge-Data Alignmentcited by 10

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 6; 2025: 12; 2026: 11.

29 papers.

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  1. 2024GLBench: A Comprehensive Benchmark for Graph with Large Language Modelscited by 36
  2. 2024UniGAD: Unifying Multi-level Graph Anomaly Detectioncited by 13
  3. 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
  4. 2025Exploring Graph Learning Tasks with Pure LLMs: A Comprehensive Benchmark and Investigationcited by 11
  5. 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
  6. 2024Does Graph Prompt Work? A Data Operation Perspective with Theoretical Analysiscited by 10
  7. 2025GraphThought: Graph Combinatorial Optimization with Thought Generationcited by 9
  8. 2024Towards Graph Foundation Models: Training on Knowledge Graphs Enables Transferability to General Graphscited by 6
  9. 2025Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applicationscited by 5
  10. 2025HGMP:Heterogeneous Graph Multi-Task Prompt Learningcited by 4
  11. 2024Reliable and Compact Graph Fine-tuning via GraphSparse Promptingcited by 3
  12. 2025Graph Prompting for Graph Learning Models: Recent Advances and Future Directionscited by 3
17 more
  1. 2024Are You Using Reliable Graph Prompts? Trojan Prompt Attacks on Graph Neural Networkscited by 2
  2. 2025GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learningcited by 2
  3. 2026When Prompting Meets Spiking: Graph Sparse Prompting via Spiking Graph Prompt Learningcited by 1
  4. 2026Unified Multi-Domain Graph Pre-training for Homogeneous and Heterogeneous Graphs via Domain-Specific Expert Encodingcited by 1
  5. 2026GFMate: Empowering Graph Foundation Models with Test-time Prompt Tuningcited by 1
  6. 2026Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignmentcited by 1
  7. 2025DP-GPL: Differentially Private Graph Prompt Learningcited by 0
  8. 2025Freeze, Prompt, and Adapt: A Framework for Source-free Unsupervised GNN Promptingcited by 0
  9. 2025Aligning the Spectrum: Hybrid Graph Pre-training and Prompt Tuning across Homophily and Heterophilycited by 0
  10. 2025GSTBench: A Benchmark Study on the Transferability of Graph Self-Supervised Learningcited by 0
  11. 2026GP2F: Cross-Domain Graph Prompting with Adaptive Fusion of Pre-trained Graph Neural Networkscited by 0
  12. 2026Scalable and Adaptive Parallel Training of Graph Transformer on Large Graphscited by 0
  13. 2026Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approachcited by 0
  14. 2026Decoupled and Divergence-Conditioned Prompt for Multi-domain Dynamic Graph Foundation Modelscited by 0
  15. 2026Preserving Geometric Integrity in Graph Prompting via Measure-Constrained Optimal Transportcited by 0
  16. 2026Signed Graph Pre-Training and Prompt Learningcited by 0
  17. 2026Spectral Reversal: Counteracting Singular Value Bias for Graph Promptingcited by 0