mlsanityData to 7 Oct 2026

GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learner

arXiv 2304.04779 ↗First posted 10 Apr 2023cs.LGcited by 131

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Abstract (arXiv)

Graph self-supervised learning (SSL), including contrastive and generative approaches, offers great potential to address the fundamental challenge of label scarcity in real-world graph data. Among both sets of graph SSL techniques, the masked graph autoencoders (e.g., GraphMAE)--one type of generative method--have recently produced promising results. The idea behind this is to reconstruct the node features (or structures)--that are randomly masked from the input--with the autoencoder architecture. However, the performance of masked feature reconstruction naturally relies on the discriminability of the input features and is usually vulnerable to disturbance in the features. In this paper, we present a masked self-supervised learning framework GraphMAE2 with the goal of overcoming this issue. The idea is to impose regularization on feature reconstruction for graph SSL. Specifically, we design the strategies of multi-view random re-mask decoding and latent representation prediction to regularize the feature reconstruction. The multi-view random re-mask decoding is to introduce randomness into reconstruction in the feature space, while the latent representation prediction is to enforce the reconstruction in the embedding space. Extensive experiments show that GraphMAE2 can consistently generate top results on various public datasets, including at least 2.45% improvements over state-of-the-art baselines on ogbn-Papers100M with 111M nodes and 1.6B edges.

Key facts. Cited by 131 papers in the map (data through 7 Oct 2026). Builds on 53 of its 61 references that are in the map. First posted on arXiv 10 Apr 2023.

Builds on

53 of 61 references.

References · 53

  1. 2020Language Models are Few-Shot Learnerscited by 32,199
  2. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  3. 2017Graph Attention Networkscited by 8,854
  4. 2019Momentum Contrast for Unsupervised Visual Representation Learningcited by 7,482
  5. 2021Masked Autoencoders Are Scalable Vision Learnerscited by 7,339
  6. 2021Emerging Properties in Self-Supervised Vision Transformerscited by 6,893
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  11. 2019Simplifying Graph Convolutional Networkscited by 1,470
  12. 2016Variational Graph Auto-Encoderscited by 1,373
38 more
  1. 2020Graph Contrastive Learning with Augmentationscited by 1,203
  2. 2018Deep Graph Infomaxcited by 1,101
  3. 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 970
  4. 2019Strategies for Pre-training Graph Neural Networkscited by 964
  5. 2021iBOT: Image BERT Pre-Training with Online Tokenizercited by 891
  6. 2020Self-supervised Learning: Generative or Contrastivecited by 693
  7. 2020Contrastive Multi-View Representation Learning on Graphscited by 651
  8. 2020On the Bottleneck of Graph Neural Networks and its Practical Implicationscited by 624
  9. 2019GraphSAINT: Graph Sampling Based Inductive Learning Methodcited by 618
  10. 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 583
  11. 2021Masked Feature Prediction for Self-Supervised Visual Pre-Trainingcited by 573
  12. 2019Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networkscited by 540
  13. 2020Deep Graph Contrastive Representation Learningcited by 535
  14. 2019DeepGCNs: Can GCNs Go as Deep as CNNs?cited by 527
  15. 2020Graph Contrastive Learning with Adaptive Augmentationcited by 519
  16. 2020GCC: Graph Contrastive Coding for Graph Neural Network Pre-Trainingcited by 461
  17. 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 443
  18. 2019InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximizationcited by 441
  19. 2021OGB-LSC: A Large-Scale Challenge for Machine Learning on Graphscited by 328
  20. 2020GPT-GNN: Generative Pre-Training of Graph Neural Networkscited by 302
  21. 2020SIGN: Scalable Inception Graph Neural Networkscited by 283
  22. 2020Graph Random Neural Network for Semi-Supervised Learning on Graphscited by 213
  23. 2021Large-Scale Representation Learning on Graphs via Bootstrappingcited by 184
  24. 2019Layer-Dependent Importance Sampling for Training Deep and Large Graph Convolutional Networkscited by 177
  25. 2020Scaling Graph Neural Networks with Approximate PageRankcited by 174
  26. 2022SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentationcited by 171
  27. 2021From Canonical Correlation Analysis to Self-supervised Graph Neural Networkscited by 138
  28. 2021Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Predictioncited by 137
  29. 2020A Unified View on Graph Neural Networks as Graph Signal Denoisingcited by 110
  30. 2021InfoGCL: Information-Aware Graph Contrastive Learningcited by 105
  31. 2019Symmetric Graph Convolutional Autoencoder for Unsupervised Graph Representation Learningcited by 94
  32. 2022Decoupling the Depth and Scope of Graph Neural Networkscited by 94
  33. 2020Adaptive Graph Encoder for Attributed Graph Embeddingcited by 88
  34. 2018Adversarially Regularized Graph Autoencoder for Graph Embeddingcited by 84
  35. 2022Rethinking and Scaling Up Graph Contrastive Learning: An Extremely Efficient Approach with Group Discriminationcited by 67
  36. 2022Mask and Reason: Pre-Training Knowledge Graph Transformers for Complex Logical Queriescited by 39
  37. 2022SelfKG: Self-Supervised Entity Alignment in Knowledge Graphscited by 32
  38. 2022Graph Auto-Encoder Via Neighborhood Wasserstein Reconstructioncited by 28

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Citing papers per year: 2023: 12; 2024: 41; 2025: 34; 2026: 44.

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  1. 2023Graph Foundation Models: Concepts, Opportunities and Challengescited by 101
  2. 2024All in One and One for All: A Simple yet Effective Method towards Cross-domain Graph Pretrainingcited by 84
  3. 2023Graph Prompt Learning: A Comprehensive Survey and Beyondcited by 61
  4. 2024UniGraph: Learning a Unified Cross-Domain Foundation Model for Text-Attributed Graphscited by 60
  5. 2024LLMs as Zero-shot Graph Learners: Alignment of GNN Representations with LLM Token Embeddingscited by 60
  6. 2025Efficient Inference for Large Reasoning Models: A Surveycited by 58
  7. 2024GOFA: A Generative One-For-All Model for Joint Graph Language Modelingcited by 56
  8. 2023Rethinking Tokenizer and Decoder in Masked Graph Modeling for Moleculescited by 49
  9. 2025UniGraph2: Learning a Unified Embedding Space to Bind Multimodal Graphscited by 47
  10. 2025EvoTest: Evolutionary Test-Time Learning for Self-Improving Agentic Systemscited by 34
  11. 2023GraphControl: Adding Conditional Control to Universal Graph Pre-trained Models for Graph Domain Transfer Learningcited by 32
  12. 2025RiemannGFM: Learning a Graph Foundation Model from Riemannian Geometrycited by 32
38 more
  1. 2024Foundation Models for the Electric Power Gridcited by 27
  2. 2025Evaluating the Paperclip Maximizer: Are RL-Based Language Models More Likely to Pursue Instrumental Goals?cited by 26
  3. 2023GiGaMAE: Generalizable Graph Masked Autoencoder via Collaborative Latent Space Reconstructioncited by 21
  4. 2024Learning Graph Quantized Tokenizerscited by 19
  5. 2024HypeBoy: Generative Self-Supervised Representation Learning on Hypergraphscited by 15
  6. 2024GraphAlign: Pretraining One Graph Neural Network on Multiple Graphs via Feature Alignmentcited by 15
  7. 2024UniGLM: Training One Unified Language Model for Text-Attributed Graph Embeddingcited by 14
  8. 2025Enabling Self-Improving Agents to Learn at Test Time With Human-In-The-Loop Guidancecited by 14
  9. 2023Masked Modeling for Self-supervised Representation Learning on Vision and Beyondcited by 13
  10. 2024LangGFM: A Large Language Model Alone Can be a Powerful Graph Foundation Modelcited by 13
  11. 2024Rethinking Reconstruction-based Graph-Level Anomaly Detection: Limitations and a Simple Remedycited by 13
  12. 2024Masked Graph Autoencoder with Non-discrete Bandwidthscited by 11
  13. 2024Pre-Training and Prompting for Few-Shot Node Classification on Text-Attributed Graphscited by 11
  14. 2025Generative Graph Pattern Machinecited by 11
  15. 2025One Prompt Fits All: Universal Graph Adaptation for Pretrained Modelscited by 11
  16. 2026MM-OpenFGL: A Comprehensive Benchmark for Multimodal Federated Graph Learningcited by 11
  17. 2026OpenMAG: A Comprehensive Benchmark for Multimodal-Attributed Graphcited by 11
  18. 2024Endowing Pre-trained Graph Models with Provable Fairnesscited by 10
  19. 2024Road Network Representation Learning with the Third Law of Geographycited by 10
  20. 2024COHO: Context-Sensitive City-Scale Hierarchical Urban Layout Generationcited by 10
  21. 2023Generative and Contrastive Paradigms Are Complementary for Graph Self-Supervised Learningcited by 9
  22. 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
  23. 2024Prompt-Based Spatio-Temporal Graph Transfer Learningcited by 9
  24. 2023ESTformer: Transformer utilising spatiotemporal dependencies for electroencephalogram super-resolutioncited by 8
  25. 2025Circuit Representation Learning with Masked Gate Modeling and Verilog-AIG Alignmentcited by 8
  26. 2024Where to Mask: Structure-Guided Masking for Graph Masked Autoencoderscited by 7
  27. 2024LangTopo: Aligning Language Descriptions of Graphs with Tokenized Topological Modelingcited by 7
  28. 2024Multi-View Empowered Structural Graph Wordification for Language Modelscited by 7
  29. 2024Generalizing Graph Transformers Across Diverse Graphs and Tasks via Pre-trainingcited by 7
  30. 2025UniGTE: Unified Graph-Text Encoding for Zero-Shot Generalization across Graph Tasks and Domainscited by 7
  31. 2024Enhance Graph Alignment for Large Language Modelscited by 6
  32. 2026Toward Effective Multimodal Graph Foundation Model: A Divide-and-Conquer Based Approachcited by 6
  33. 2024A Survey of Few-Shot Learning on Graphs: from Meta-Learning to Pre-Training and Prompt Learningcited by 5
  34. 2024Unsupervised Graph Neural Architecture Search with Disentangled Self-supervisioncited by 5
  35. 2025Towards Graph Foundation Models: A Transferability Perspectivecited by 5
  36. 2025Hierarchical Vector Quantized Graph Autoencoder with Annealing-Based Code Selectioncited by 5
  37. 2026Billion-Scale Graph Foundation Modelscited by 5
  38. 2026Structure-Centric Graph Foundation Model via Geometric Basescited by 5

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