Directional diffusion models for graph representation learning
On the map: Diffusion models → Flow matching, time series and science
Abstract (arXiv)
In recent years, diffusion models have achieved remarkable success in various domains of artificial intelligence, such as image synthesis, super-resolution, and 3D molecule generation. However, the application of diffusion models in graph learning has received relatively little attention. In this paper, we address this gap by investigating the use of diffusion models for unsupervised graph representation learning. We begin by identifying the anisotropic structures of graphs and a crucial limitation of the vanilla forward diffusion process in learning anisotropic structures. This process relies on continuously adding an isotropic Gaussian noise to the data, which may convert the anisotropic signals to noise too quickly. This rapid conversion hampers the training of denoising neural networks and impedes the acquisition of semantically meaningful representations in the reverse process. To address this challenge, we propose a new class of models called it directional diffusion models. These models incorporate data-dependent, anisotropic, and directional noises in the forward diffusion process. To assess the efficacy of our proposed models, we conduct extensive experiments on 12 publicly available datasets, focusing on two distinct graph representation learning tasks. The experimental results demonstrate the superiority of our models over state-of-the-art baselines, indicating their effectiveness in capturing meaningful graph representations. Our studies not only provide valuable insights into the forward process of diffusion models but also highlight the wide-ranging potential of these models for various graph-related tasks.
Key facts. Cited by 13 papers in the map (data through 14 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 31 of its 35 references that are in the map. First posted on arXiv 22 Jun 2023.
Builds on
31 of 35 references.
Closest ancestors · 2
Same direction, newest first
- 2022Diffusion Models for Graphs Benefit From Discrete State Spaces4 Oct
- 2022Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equations5 Feb
Other references · 29
- 2020Denoising Diffusion Probabilistic Modelscited by 21,076
- 2021High-Resolution Image Synthesis with Latent Diffusion Modelscited by 18,863
- 2020Denoising Diffusion Implicit Modelscited by 9,781
- 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,255
- 2018How Powerful are Graph Neural Networks?cited by 4,393
- 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,163
- 2020Graph Contrastive Learning with Augmentationscited by 1,208
- 2018Deep Graph Infomaxcited by 1,106
- 2022Diffusion-LM Improves Controllable Text Generationcited by 1,027
- 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 976
- 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 787
- 2020Contrastive Multi-View Representation Learning on Graphscited by 652
17 more
- 2020Deep Graph Contrastive Representation Learningcited by 539
- 2021Label-Efficient Semantic Segmentation with Diffusion Modelscited by 499
- 2020GCC: Graph Contrastive Coding for Graph Neural Network Pre-Trainingcited by 463
- 2021Diffusion Autoencoders: Toward a Meaningful and Decodable Representationcited by 449
- 2022GraphMAE: Self-Supervised Masked Graph Autoencoderscited by 448
- 2019InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximizationcited by 441
- 2020GPT-GNN: Generative Pre-Training of Graph Neural Networkscited by 303
- 2022Perception Prioritized Training of Diffusion Modelscited by 303
- 2021Graph Contrastive Learning Automatedcited by 287
- 2022Cold Diffusion: Inverting Arbitrary Image Transforms Without Noisecited by 276
- 2019Representation Degeneration Problem in Training Natural Language Generation Modelscited by 255
- 2023On the Importance of Noise Scheduling for Diffusion Modelscited by 194
- 2021Large-Scale Representation Learning on Graphs via Bootstrappingcited by 186
- 2021From Canonical Correlation Analysis to Self-supervised Graph Neural Networkscited by 141
- 2021InfoGCL: Information-Aware Graph Contrastive Learningcited by 105
- 2021Diffusion-Based Representation Learningcited by 57
- 2022Unsupervised Representation Learning from Pre-trained Diffusion Probabilistic Modelscited by 54
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Citing papers per year: 2024: 5; 2025: 6; 2026: 2.
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- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusioncited by 25
- 2024Hyperbolic Geometric Latent Diffusion Model for Graph Generationcited by 20
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
- 2025HOG-Diff: Higher-Order Guided Diffusion for Graph Generationcited by 8
- 2026RADAR: Redundancy-Aware Diffusion for Multi-Agent Communication Structure Generationcited by 5
- 2025Backdoor Attacks on Discrete Graph Diffusion Modelscited by 3
- 2024Diffusion-based Graph Generative Methodscited by 2
- 2025Graph Representation Learning with Diffusion Generative Modelscited by 2
- 2025Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Predictioncited by 2
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Modelscited by 1
- 2026CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localizationcited by 1
- 2024I-Diff: Structural Regularization for High-Fidelity Diffusion Modelscited by 0
1 more
- 2026RADAR: Redundancy-Aware Diffusion for Multi-Agent Communication Structure Generation11 May 2026
- 2026CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization19 Mar 2026
- 2025Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Prediction6 Oct 2025
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanisms4 Jul 2025
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Models8 May 2025
- 2025Backdoor Attacks on Discrete Graph Diffusion Models8 Mar 2025
- 2025HOG-Diff: Higher-Order Guided Diffusion for Graph Generation6 Feb 2025
- 2025Graph Representation Learning with Diffusion Generative Models22 Jan 2025
- 2024Hyperbolic Geometric Latent Diffusion Model for Graph Generation6 May 2024
- 2024I-Diff: Structural Regularization for High-Fidelity Diffusion Models25 Mar 2024
- 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspective24 Mar 2024
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusion4 Feb 2024
1 more
- 2024Diffusion-based Graph Generative Methods28 Jan 2024
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusioncited by 25
- 2024Hyperbolic Geometric Latent Diffusion Model for Graph Generationcited by 20
- 2025HOG-Diff: Higher-Order Guided Diffusion for Graph Generationcited by 8
- 2025Backdoor Attacks on Discrete Graph Diffusion Modelscited by 3
- 2024Diffusion-based Graph Generative Methodscited by 2
- 2025Graph Representation Learning with Diffusion Generative Modelscited by 2
- 2025Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Predictioncited by 2
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Modelscited by 1
- 2024I-Diff: Structural Regularization for High-Fidelity Diffusion Modelscited by 0
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanismscited by 0
- 2025Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Prediction6 Oct 2025
- 2025FAROS: Fair Graph Generation via Attribute Switching Mechanisms4 Jul 2025
- 2025Graffe: Graph Representation Learning via Diffusion Probabilistic Models8 May 2025
- 2025Backdoor Attacks on Discrete Graph Diffusion Models8 Mar 2025
- 2025HOG-Diff: Higher-Order Guided Diffusion for Graph Generation6 Feb 2025
- 2025Graph Representation Learning with Diffusion Generative Models22 Jan 2025
- 2024Hyperbolic Geometric Latent Diffusion Model for Graph Generation6 May 2024
- 2024I-Diff: Structural Regularization for High-Fidelity Diffusion Models25 Mar 2024
- 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusion4 Feb 2024
- 2024Diffusion-based Graph Generative Methods28 Jan 2024
Similar, not cited
Close in wording, no citation either way
- 2023Autoregressive Diffusion Model for Graph Generation
- 2023Graph Generation with Diffusion Mixture
- 2023Generative Diffusion Models on Graphs: Methods and Applications
- 2025Diffusion-Free Graph Generation with Next-Scale Prediction
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classification
- 2026Generative Diffusion Models of Stochastic Graph Signals
- 2025Do Graph Diffusion Models Accurately Capture and Generate Substructure Distributions?
- 2024From Graph Diffusion to Graph Classification