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Chemellia: An Ecosystem for Atomistic Scientific Machine Learning

arXiv 2305.12010 ↗First posted 19 May 2023cs.CE cond-mat.mtrl-sci cs.LGcited by 0

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Abstract (arXiv)

Chemellia is an open-source framework for atomistic machine learning in the Julia programming language. The framework takes advantage of Julia's high speed as well as the ability to share and reuse code and interfaces through the paradigm of multiple dispatch. Chemellia is designed to make use of existing interfaces and avoid ``reinventing the wheel'' wherever possible. A key aspect of the Chemellia ecosystem is the ChemistryFeaturization interface for defining and encoding features -- it is designed to maximize interoperability between featurization schemes and elements thereof, to maintain provenance of encoded features, and to ensure easy decodability and reconfigurability to enable feature engineering experiments. This embodies the overall design principles of the Chemellia ecosystem: separation of concerns, interoperability, and transparency. We illustrate these principles by discussing the implementation of crystal graph convolutional neural networks for material property prediction.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 11 of its 42 references that are in the map. First posted on arXiv 19 May 2023.

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11 of 42 references.

References · 11

  1. 2019Ab-Initio Solution of the Many-Electron Schr"odinger Equation with Deep Neural Networkscited by 195
  2. 2019Graph Convolutional Networks with EigenPoolingcited by 94
  3. 2019DScribe: Library of Descriptors for Machine Learning in Materials Sciencecited by 63
  4. 2022Leakage and the Reproducibility Crisis in ML-based Sciencecited by 63
  5. 2018Fashionable Modelling with Fluxcited by 53
  6. 2018Don't Unroll Adjoint: Differentiating SSA-Form Programscited by 44
  7. 2022SchNetPack 2.0: A neural network toolbox for atomistic machine learningcited by 29
  8. 2020Machine Learning for Condensed Matter Physicscited by 22
  9. 2018MT-CGCNN: Integrating Crystal Graph Convolutional Neural Network with Multitask Learning for Material Property Predictioncited by 17
  10. 2022FINETUNA: Fine-tuning Accelerated Molecular Simulationscited by 4
  11. 2021AbstractDifferentiation.jl: Backend-Agnostic Differentiable Programming in Juliacited by 2

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