mlsanityData to 7 Oct 2026

New Benchmarks for Learning on Non-Homophilous Graphs

arXiv 2104.01404 ↗First posted 3 Apr 2021cs.LG cs.SIcited by 81

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Abstract (arXiv)

Much data with graph structures satisfy the principle of homophily, meaning that connected nodes tend to be similar with respect to a specific attribute. As such, ubiquitous datasets for graph machine learning tasks have generally been highly homophilous, rewarding methods that leverage homophily as an inductive bias. Recent work has pointed out this particular focus, as new non-homophilous datasets have been introduced and graph representation learning models better suited for low-homophily settings have been developed. However, these datasets are small and poorly suited to truly testing the effectiveness of new methods in non-homophilous settings. We present a series of improved graph datasets with node label relationships that do not satisfy the homophily principle. Along with this, we introduce a new measure of the presence or absence of homophily that is better suited than existing measures in different regimes. We benchmark a range of simple methods and graph neural networks across our proposed datasets, drawing new insights for further research. Data and codes can be found at https://github.com/CUAI/Non-Homophily-Benchmarks.

Key facts. Cited by 81 papers in the map (data through 7 Oct 2026). Builds on 35 of its 67 references that are in the map. First posted on arXiv 3 Apr 2021.

Builds on

35 of 67 references.

References · 35

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23 more
  1. 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 970
  2. 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 875
  3. 2020Simple and Deep Graph Convolutional Networkscited by 857
  4. 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 821
  5. 2020Benchmarking Graph Neural Networkscited by 672
  6. 2020Adaptive Universal Generalized PageRank Graph Neural Networkcited by 592
  7. 2019Multi-scale Attributed Node Embeddingcited by 543
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  13. 2020Graph Neural Networks with Heterophilycited by 202
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  15. 2021Two Sides of the Same Coin: Heterophily and Oversmoothing in Graph Convolutional Neural Networkscited by 182
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Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 7; 2022: 21; 2023: 18; 2024: 22; 2025: 8; 2026: 5.

81 papers.

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  1. 2022Long Range Graph Benchmarkcited by 258
  2. 2023NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classificationcited by 207
  3. 2022Graph Neural Networks for Graphs with Heterophily: A Surveycited by 175
  4. 2022Revisiting Heterophily For Graph Neural Networkscited by 169
  5. 2022Handling Distribution Shifts on Graphs: An Invariance Perspectivecited by 163
  6. 2021Graph-less Neural Networks: Teaching Old MLPs New Tricks via Distillationcited by 151
  7. 2021Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Predictioncited by 137
  8. 2023SGFormer: Simplifying and Empowering Transformers for Large-Graph Representationscited by 131
  9. 2021You are AllSet: A Multiset Function Framework for Hypergraph Neural Networkscited by 124
  10. 2021Is Heterophily A Real Nightmare For Graph Neural Networks To Do Node Classification?cited by 82
  11. 2023Ordered GNN: Ordering Message Passing to Deal with Heterophily and Over-smoothingcited by 67
  12. 2022Empowering Graph Representation Learning with Test-Time Graph Transformationcited by 66
38 more
  1. 2022Certified Graph Unlearningcited by 46
  2. 2023Beyond Homophily: Reconstructing Structure for Graph-agnostic Clusteringcited by 29
  3. 2024The Heterophilic Graph Learning Handbook: Benchmarks, Models, Theoretical Analysis, Applications and Challengescited by 29
  4. 2023Towards Deep Attention in Graph Neural Networks: Problems and Remediescited by 24
  5. 2022Beyond Real-world Benchmark Datasets: An Empirical Study of Node Classification with GNNscited by 23
  6. 2022Make Heterophily Graphs Better Fit GNN: A Graph Rewiring Approachcited by 23
  7. 2024Partitioning Message Passing for Graph Fraud Detectioncited by 21
  8. 2022Node-oriented Spectral Filtering for Graph Neural Networkscited by 17
  9. 2024Node-wise Filtering in Graph Neural Networks: A Mixture of Experts Approachcited by 17
  10. 2024Lorentzian Residual Neural Networkscited by 17
  11. 2022Augmentation-Free Graph Contrastive Learning with Performance Guaranteecited by 16
  12. 2023Individual and Structural Graph Information Bottlenecks for Out-of-Distribution Generalizationcited by 15
  13. 2023Feature Transportation Improves Graph Neural Networkscited by 15
  14. 2024Understanding Heterophily for Graph Neural Networkscited by 15
  15. 2021Beyond Low-pass Filtering: Graph Convolutional Networks with Automatic Filteringcited by 14
  16. 2022NOSMOG: Learning Noise-robust and Structure-aware MLPs on Graphscited by 14
  17. 2022Single-Pass Contrastive Learning Can Work for Both Homophilic and Heterophilic Graphcited by 14
  18. 2022ES-GNN: Generalizing Graph Neural Networks Beyond Homophily with Edge Splittingcited by 13
  19. 2022Link Prediction on Heterophilic Graphs via Disentangled Representation Learningcited by 13
  20. 2023GraphGLOW: Universal and Generalizable Structure Learning for Graph Neural Networkscited by 12
  21. 2022Decoupled Self-supervised Learning for Non-Homophilous Graphscited by 10
  22. 2023Privacy-Preserving Graph Machine Learning from Data to Computation: A Surveycited by 10
  23. 2024Learning Invariant Representations of Graph Neural Networks via Cluster Generalizationcited by 10
  24. 2023Graph Neural Networks with Diverse Spectral Filteringcited by 9
  25. 2023Graph Transformers for Large Graphscited by 9
  26. 2024What Is Missing In Homophily? Disentangling Graph Homophily For Graph Neural Networkscited by 9
  27. 2025Homophily Enhanced Graph Domain Adaptationcited by 9
  28. 2021A Piece-wise Polynomial Filtering Approach for Graph Neural Networkscited by 7
  29. 2023When Do Graph Neural Networks Help with Node Classification? Investigating the Impact of Homophily Principle on Node Distinguishabilitycited by 7
  30. 2023Spatial Heterophily Aware Graph Neural Networkscited by 7
  31. 2023A Versatile Graph Learning Approach through LLM-based Agentcited by 6
  32. 2024Representation Learning on Heterophilic Graph with Directional Neighborhood Attentioncited by 6
  33. 2024Graph Neural Reaction Diffusion Modelscited by 6
  34. 2024The Heterophilic Snowflake Hypothesis: Training and Empowering GNNs for Heterophilic Graphscited by 6
  35. 2023Tailoring Self-Attention for Graph via Rooted Subtreescited by 5
  36. 2024Rethinking Spectral Graph Neural Networks with Spatially Adaptive Filteringcited by 3
  37. 2024SpikeGraphormer: A High-Performance Graph Transformer with Spiking Graph Attentioncited by 3
  38. 2024GeoMix: Towards Geometry-Aware Data Augmentationcited by 3

50 most cited of 81 All 81 (JSON)