Diffusion Improves Graph Learning
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Abstract (arXiv)
Graph convolution is the core of most Graph Neural Networks (GNNs) and usually approximated by message passing between direct (one-hop) neighbors. In this work, we remove the restriction of using only the direct neighbors by introducing a powerful, yet spatially localized graph convolution: Graph diffusion convolution (GDC). GDC leverages generalized graph diffusion, examples of which are the heat kernel and personalized PageRank. It alleviates the problem of noisy and often arbitrarily defined edges in real graphs. We show that GDC is closely related to spectral-based models and thus combines the strengths of both spatial (message passing) and spectral methods. We demonstrate that replacing message passing with graph diffusion convolution consistently leads to significant performance improvements across a wide range of models on both supervised and unsupervised tasks and a variety of datasets. Furthermore, GDC is not limited to GNNs but can trivially be combined with any graph-based model or algorithm (e.g. spectral clustering) without requiring any changes to the latter or affecting its computational complexity. Our implementation is available online.
Key facts. Cited by 414 papers in the map (data through 7 Oct 2026). First posted on arXiv 28 Oct 2019.
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Citing papers per year: 2021: 68; 2022: 82; 2023: 88; 2024: 77; 2025: 65; 2026: 34.
414 papers.
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- 2021Understanding over-squashing and bottlenecks on graphs via curvaturecited by 471
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2021GRAND: Graph Neural Diffusioncited by 258
- 2021BernNet: Learning Arbitrary Graph Spectral Filters via Bernstein Approximationcited by 195
- 2021Anomaly Detection on Attributed Networks via Contrastive Self-Supervised Learningcited by 175
- 2022How Powerful are Spectral Graph Neural Networkscited by 169
- 2023On Over-Squashing in Message Passing Neural Networks: The Impact of Width, Depth, and Topologycited by 163
- 2023Graph Inductive Biases in Transformers without Message Passingcited by 150
- 2021GraphiT: Encoding Graph Structure in Transformerscited by 146
- 2023A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detectioncited by 145
- 2021From Canonical Correlation Analysis to Self-supervised Graph Neural Networkscited by 138
- 2022NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphscited by 137
38 more
- 2022Data Augmentation for Deep Graph Learning: A Surveycited by 132
- 2021An Empirical Study of Graph Contrastive Learningcited by 113
- 2021Learning Graph Embeddings for Compositional Zero-shot Learningcited by 112
- 2022Towards Unsupervised Deep Graph Structure Learningcited by 112
- 2022FoSR: First-order spectral rewiring for addressing oversquashing in GNNscited by 104
- 2022How to Find Your Friendly Neighborhood: Graph Attention Design with Self-Supervisioncited by 102
- 2021Robustness of Graph Neural Networks at Scalecited by 100
- 2022Universal Prompt Tuning for Graph Neural Networkscited by 100
- 2022Revisiting Over-smoothing and Over-squashing Using Ollivier-Ricci Curvaturecited by 96
- 2021Breaking the Limit of Graph Neural Networks by Improving the Assortativity of Graphs with Local Mixing Patternscited by 95
- 2022Decoupling the Depth and Scope of Graph Neural Networkscited by 94
- 2023Understanding Oversquashing in GNNs through the Lens of Effective Resistancecited by 94
- 2021GNNAutoScale: Scalable and Expressive Graph Neural Networks via Historical Embeddingscited by 90
- 2022Convolutional Neural Networks on Graphs with Chebyshev Approximation, Revisitedcited by 87
- 2023DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusioncited by 85
- 2021Beltrami Flow and Neural Diffusion on Graphscited by 84
- 2021New Benchmarks for Learning on Non-Homophilous Graphscited by 81
- 2023DRew: Dynamically Rewired Message Passing with Delaycited by 81
- 2021Graph Posterior Network: Bayesian Predictive Uncertainty for Node Classificationcited by 79
- 2022DiffWire: Inductive Graph Rewiring via the Lov'asz Boundcited by 79
- 2022Neo-GNNs: Neighborhood Overlap-aware Graph Neural Networks for Link Predictioncited by 78
- 2022Expander Graph Propagationcited by 75
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2021A Survey on Graph Structure Learning: Progress and Opportunitiescited by 70
- 2021Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learningcited by 70
- 2021Extract the Knowledge of Graph Neural Networks and Go Beyond it: An Effective Knowledge Distillation Frameworkcited by 69
- 2021Generative and Contrastive Self-Supervised Learning for Graph Anomaly Detectioncited by 67
- 2022A Survey on Graph Representation Learning Methodscited by 66
- 2021Language-Agnostic Representation Learning of Source Code from Structure and Contextcited by 63
- 2022On the Trade-off between Over-smoothing and Over-squashing in Deep Graph Neural Networkscited by 63
- 2021On the Unreasonable Effectiveness of Feature propagation in Learning on Graphs with Missing Node Featurescited by 62
- 2022Graph Data Augmentation for Graph Machine Learning: A Surveycited by 61
- 2021Anomaly Detection in Dynamic Graphs via Transformercited by 57
- 2023Locality-Aware Graph-Rewiring in GNNscited by 55
- 2021Scalable and Adaptive Graph Neural Networks with Self-Label-Enhanced trainingcited by 54
- 2022Graph Anomaly Detection via Multi-Scale Contrastive Learning Networks with Augmented Viewcited by 54
- 2024A Survey of Graph Neural Networks in Real world: Imbalance, Noise, Privacy and OOD Challengescited by 54
- 2022Oversquashing in GNNs through the lens of information contraction and graph expansioncited by 52
50 most cited of 414 All 414 (JSON)
- 2026Synchronous Multi-view Neural Diffusion30 Sep 2026
- 2026Learning the Graph and the Embedding Together: Classifier-Independent Rewiring for Heterophilic Node Classification26 Sep 2026
- 2026Scaffold: Support Graph Theory Based Sparsification for Graph Neural Networks25 Sep 2026
- 2026Moment-guided edge sampling24 Sep 2026
- 2026Local Evidence and Geometric Readout Repair in Trained GNNs22 Sep 2026
- 2026A Multi-Resolution Multi-Domain Pre-Training Framework for Universal Traffic Forecasting12 Sep 2026
- 2026Not Just Oversmoothing: Detecting the Echo Chamber Effect in Graph Neural Networks6 Sep 2026
- 2026HOPPER: Learnable Hop Extraction for Linearized Graph Sequence Models10 Aug 2026
- 2026Network Denoising Revisited: A Ricci-Flow-Inspired Graph Diffusion Method4 Aug 2026
- 2026Schreier-Coset Graph Rewiring29 Jul 2026
- 2026Ramanujan Graph Rewiring with Non Negative Resistance Curvature19 Jun 2026
- 2026AGDN: Learning to Solve Traveling Salesman Problem with Anisotropic Graph Diffusion Network17 Jun 2026
38 more
- 2026Multi-Modal Graph Neural Network with Transformer-Guided Adaptive Diffusion for Preclinical Alzheimer Classification2 Jun 2026
- 2026RADE: Random Add-Drop Edge as a Regularizer30 May 2026
- 2026PropLLM: Propagation-Aware Scene Reconstruction for Network Fault Diagnosis30 May 2026
- 2026A Generalized Tikhonov Layer for Interpretable-by-design Graph Neural Networks27 May 2026
- 2026Revisiting Pre-Propagation GNNs: Robust Diffusion Operators and Hidden-State Re-Propagation24 May 2026
- 2026Graph Navier Stokes Networks20 May 2026
- 2026Spectral Flow Certificates for Depth-Aware Long-Range Propagation in Graph Neural Networks16 May 2026
- 2026Attention-based graph neural networks: a survey9 May 2026
- 2026Bilevel Graph Structure Learning, Revisited: Inner-Channel Origins of the Reported Gain8 May 2026
- 2026Model-to-Data Distillation for Graph Neural Networks7 May 2026
- 2026Graph Rewiring in GNNs to Mitigate Over-Squashing and Over-Smoothing: A Survey1 May 2026
- 2026Latent-Hysteresis Graph ODEs: Modeling Coupled Topology-Feature Evolution via Continuous Phase Transitions27 Apr 2026
- 2026A Diffusion-Contrastive Graph Neural Network with Virtual Nodes for Wind Nowcasting in Unobserved Regions11 Apr 2026
- 2026Geometric Evolution Graph Convolutional Networks: Enhancing Graph Representation Learning via Ricci Flow27 Mar 2026
- 2026On the Complexity of Optimal Graph Rewiring for Oversmoothing and Oversquashing in Graph Neural Networks27 Mar 2026
- 2026Multimodal Graph Representation Learning with Dynamic Information Pathways10 Mar 2026
- 2026Diffusion-Guided Pretraining for Brain Graph Foundation Models10 Feb 2026
- 2026FairRARI: A Plug and Play Framework for Fairness-Aware PageRank9 Feb 2026
- 2026UltRAG: a Universal Simple Scalable Recipe for Knowledge Graph RAG28 Jan 2026
- 2026FSD-CAP: Fractional Subgraph Diffusion with Class-Aware Propagation for Graph Feature Imputation26 Jan 2026
- 2026Identifying and Correcting Label Noise for Robust GNNs via Influence Contradiction24 Jan 2026
- 2026Learning from Historical Activations in Graph Neural Networks3 Jan 2026
- 2025Grad: Guided Relation Diffusion Generation for Graph Augmentation in Graph Fraud Detection19 Dec 2025
- 2025Learning and Editing Universal Graph Prompt Tuning via Reinforcement Learning9 Dec 2025
- 2025Rethinking Message Passing Neural Networks with Diffusion Distance-guided Stress Majorization25 Nov 2025
- 2025Rethinking Semi-Supervised Node Classification with Self-Supervised Graph Clustering25 Nov 2025
- 2025Resolving Node Identifiability in Graph Neural Processes via Laplacian Spectral Encodings24 Nov 2025
- 2025When Structure Doesn't Help: LLMs Do Not Read Text-Attributed Graphs as Effectively as We Expected20 Nov 2025
- 2025Gauge-Equivariant Graph Networks via Self-Interference Cancellation20 Nov 2025
- 2025Self-Adaptive Graph Mixture of Models17 Nov 2025
- 2025Are Graph Transformers Necessary? Efficient Long-Range Message Passing with Fractal Nodes in MPNNs17 Nov 2025
- 2025Adaptive Graph Rewiring to Mitigate Over-Squashing in Mesh-Based GNNs for Fluid Dynamics Simulations16 Nov 2025
- 2025Improving Long-Range Interactions in Graph Neural Simulators via Hamiltonian Dynamics11 Nov 2025
- 2025DGTN: Graph-Enhanced Transformer with Diffusive Attention Gating Mechanism for Enzyme DDG Prediction7 Nov 2025
- 2025A roadmap for curvature-based geometric data analysis and learning26 Oct 2025
- 2025An Active Diffusion Neural Network for Graphs22 Oct 2025
- 2025gLSTM: Mitigating Over-Squashing by Increasing Storage Capacity9 Oct 2025
- 2025Accelerated Evolving Set Processes for Local PageRank Computation9 Oct 2025
50 newest of 414 All 414 (JSON)
- 2024A Directional Diffusion Graph Transformer for Recommendationcited by 9
- 2023Supercharging Graph Transformers with Advective Diffusioncited by 7
- 2024Graph Neural Reaction Diffusion Modelscited by 6
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classificationcited by 4
- 2024Latent Conditional Diffusion-based Data Augmentation for Continuous-Time Dynamic Graph Modelcited by 2
- 2022Changes from Classical Statistics to Modern Statistics and Data Sciencecited by 0
- 2025Diffusion on Graph: Augmentation of Graph Structure for Node Classification16 Mar 2025
- 2024Latent Conditional Diffusion-based Data Augmentation for Continuous-Time Dynamic Graph Model11 Jul 2024
- 2024Graph Neural Reaction Diffusion Models16 Jun 2024
- 2024A Directional Diffusion Graph Transformer for Recommendation4 Apr 2024
- 2023Supercharging Graph Transformers with Advective Diffusion10 Oct 2023
- 2022Changes from Classical Statistics to Modern Statistics and Data Science30 Oct 2022
- 2024Augmenting Textual Generation via Topology Aware Retrieval27 May 2024
- 2021Understanding over-squashing and bottlenecks on graphs via curvaturecited by 471
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2021GRAND: Graph Neural Diffusioncited by 258
- 2021BernNet: Learning Arbitrary Graph Spectral Filters via Bernstein Approximationcited by 195
- 2021Anomaly Detection on Attributed Networks via Contrastive Self-Supervised Learningcited by 175
- 2022How Powerful are Spectral Graph Neural Networkscited by 169
- 2023On Over-Squashing in Message Passing Neural Networks: The Impact of Width, Depth, and Topologycited by 163
- 2023Graph Inductive Biases in Transformers without Message Passingcited by 150
- 2021GraphiT: Encoding Graph Structure in Transformerscited by 146
- 2023A Survey on Graph Neural Networks for Time Series: Forecasting, Classification, Imputation, and Anomaly Detectioncited by 145
- 2021From Canonical Correlation Analysis to Self-supervised Graph Neural Networkscited by 138
- 2022NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphscited by 137
12 most cited of 404 All 404 (JSON)
- 2026Synchronous Multi-view Neural Diffusion30 Sep 2026
- 2026Learning the Graph and the Embedding Together: Classifier-Independent Rewiring for Heterophilic Node Classification26 Sep 2026
- 2026Scaffold: Support Graph Theory Based Sparsification for Graph Neural Networks25 Sep 2026
- 2026Moment-guided edge sampling24 Sep 2026
- 2026Local Evidence and Geometric Readout Repair in Trained GNNs22 Sep 2026
- 2026A Multi-Resolution Multi-Domain Pre-Training Framework for Universal Traffic Forecasting12 Sep 2026
- 2026Not Just Oversmoothing: Detecting the Echo Chamber Effect in Graph Neural Networks6 Sep 2026
- 2026HOPPER: Learnable Hop Extraction for Linearized Graph Sequence Models10 Aug 2026
- 2026Network Denoising Revisited: A Ricci-Flow-Inspired Graph Diffusion Method4 Aug 2026
- 2026Schreier-Coset Graph Rewiring29 Jul 2026
- 2026Ramanujan Graph Rewiring with Non Negative Resistance Curvature19 Jun 2026
- 2026AGDN: Learning to Solve Traveling Salesman Problem with Anisotropic Graph Diffusion Network17 Jun 2026
12 newest of 404 All 404 (JSON)