Deep learning-based electroencephalography analysis: a systematic review
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Abstract (arXiv)
Electroencephalography (EEG) is a complex signal and can require several years of training to be correctly interpreted. Recently, deep learning (DL) has shown great promise in helping make sense of EEG signals due to its capacity to learn good feature representations from raw data. Whether DL truly presents advantages as compared to more traditional EEG processing approaches, however, remains an open question. In this work, we review 156 papers that apply DL to EEG, published between January 2010 and July 2018, and spanning different application domains such as epilepsy, sleep, brain-computer interfacing, and cognitive and affective monitoring. We extract trends and highlight interesting approaches in order to inform future research and formulate recommendations. Various data items were extracted for each study pertaining to 1) the data, 2) the preprocessing methodology, 3) the DL design choices, 4) the results, and 5) the reproducibility of the experiments. Our analysis reveals that the amount of EEG data used across studies varies from less than ten minutes to thousands of hours. As for the model, 40% of the studies used convolutional neural networks (CNNs), while 14% used recurrent neural networks (RNNs), most often with a total of 3 to 10 layers. Moreover, almost one-half of the studies trained their models on raw or preprocessed EEG time series. Finally, the median gain in accuracy of DL approaches over traditional baselines was 5.4% across all relevant studies. More importantly, however, we noticed studies often suffer from poor reproducibility: a majority of papers would be hard or impossible to reproduce given the unavailability of their data and code. To help the field progress, we provide a list of recommendations for future studies and we make our summary table of DL and EEG papers available and invite the community to contribute.
Key facts. Cited by 155 papers in the map (data through 7 Oct 2026). First posted on arXiv 16 Jan 2019.
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Citing papers per year: 2021: 23; 2022: 18; 2023: 21; 2024: 25; 2025: 34; 2026: 34.
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- 2021BENDR: using transformers and a contrastive self-supervised learning task to learn from massive amounts of EEG datacited by 194
- 2022Decoding speech perception from non-invasive brain recordingscited by 129
- 2023Brain decoding: toward real-time reconstruction of visual perceptioncited by 64
- 2021FBCNet: A Multi-view Convolutional Neural Network for Brain-Computer Interfacecited by 54
- 2024EEG2Rep: Enhancing Self-supervised EEG Representation Through Informative Masked Inputscited by 48
- 2022MAtt: A Manifold Attention Network for EEG Decodingcited by 43
- 2021Automatic Sleep Staging of EEG Signals: Recent Development, Challenges, and Future Directionscited by 41
- 2021AI-based Reconstruction for Fast MRI -- A Systematic Review and Meta-analysiscited by 38
- 2022Data augmentation for learning predictive models on EEG: a systematic comparisoncited by 32
- 2025EEG Foundation Models: A Critical Review of Current Progress and Future Directionscited by 30
- 2024The largest EEG-based BCI reproducibility study for open science: the MOABB benchmarkcited by 28
- 2021CADDA: Class-wise Automatic Differentiable Data Augmentation for EEG Signalscited by 22
38 more
- 2021GANSER: A Self-supervised Data Augmentation Framework for EEG-based Emotion Recognitioncited by 17
- 2025FEMBA: Efficient and Scalable EEG Analysis with a Bidirectional Mamba Foundation Modelcited by 15
- 2021Robust learning from corrupted EEG with dynamic spatial filteringcited by 14
- 2022GMSS: Graph-Based Multi-Task Self-Supervised Learning for EEG Emotion Recognitioncited by 14
- 2025CEReBrO: Compact Encoder for Representations of Brain Oscillations Using Efficient Alternating Attentioncited by 13
- 2021End-to-end learnable EEG channel selection for deep neural networks with Gumbel-softmaxcited by 12
- 2021Neonatal seizure detection from raw multi-channel EEG using a fully convolutional architecturecited by 12
- 2021A Compact and Interpretable Convolutional Neural Network for Cross-Subject Driver Drowsiness Detection from Single-Channel EEGcited by 12
- 2023Calibration-free online test-time adaptation for electroencephalography motor imagery decodingcited by 12
- 2021Toward Open-World Electroencephalogram Decoding Via Deep Learning: A Comprehensive Surveycited by 11
- 2022EEG-ITNet: An Explainable Inception Temporal Convolutional Network for Motor Imagery Classificationcited by 11
- 2024A Systematic Evaluation of Euclidean Alignment with Deep Learning for EEG Decodingcited by 10
- 2023Functional Neural Networks: Shift invariant models for functional data with applications to EEG classificationcited by 9
- 2024BioDiffusion: A Versatile Diffusion Model for Biomedical Signal Synthesiscited by 9
- 2025EEG-CLIP : Learning EEG representations from natural language descriptionscited by 9
- 2023Evaluating the structure of cognitive tasks with transfer learningcited by 8
- 2022Time Majority Voting, a PC-based EEG Classifier for Non-expert Userscited by 7
- 2023Trends in Machine Learning and Electroencephalogram (EEG): A Review for Undergraduate Researcherscited by 7
- 2023ViT2EEG: Leveraging Hybrid Pretrained Vision Transformers for EEG Datacited by 7
- 2021Deep Recurrent Encoder: A scalable end-to-end network to model brain signalscited by 6
- 2023CSLP-AE: A Contrastive Split-Latent Permutation Autoencoder Framework for Zero-Shot Electroencephalography Signal Conversioncited by 6
- 2023Deep Learning Approaches for Seizure Video Analysis: A Reviewcited by 6
- 2025Is Limited Participant Diversity Impeding EEG-based Machine Learning?cited by 6
- 2021Deep Convolutional Neural Network Applied to Electroencephalography: Raw Data vs Spectral Featurescited by 5
- 2021Decoding ECoG signal into 3D hand translation using deep learningcited by 5
- 2024Geometric Neural Network based on Phase Space for BCI-EEG decodingcited by 5
- 2026Decentralized Attention Fails Centralized Signals: Rethinking Transformers for Medical Time Seriescited by 5
- 2021ScalingNet: extracting features from raw EEG data for emotion recognitioncited by 4
- 2021EEGminer: Discovering Interpretable Features of Brain Activity with Learnable Filterscited by 4
- 2024Explaining Time Series Classification Predictions via Causal Attributionscited by 4
- 2024Hypergraph Multi-modal Large Language Model: Exploiting EEG and Eye-tracking Modalities to Evaluate Heterogeneous Responses for Video Understandingcited by 4
- 2025The role of data partitioning on the performance of EEG-based deep learning models in supervised cross-subject analysis: a preliminary studycited by 4
- 2025Foundation Models for Cross-Domain EEG Analysis Application: A Surveycited by 4
- 2025Channel Selected Stratified Nested Cross Validation for Clinically Relevant EEG Based Parkinsons Disease Detectioncited by 4
- 2026BrainRVQ: A High-Fidelity EEG Foundation Model via Dual-Domain Residual Quantization and Hierarchical Autoregressioncited by 4
- 2021Subject-Independent Drowsiness Recognition from Single-Channel EEG with an Interpretable CNN-LSTM modelcited by 3
- 2022Bridging the Gap Between Patient-specific and Patient-independent Seizure Prediction via Knowledge Distillationcited by 3
- 2022Vector-Based Data Improves Left-Right Eye-Tracking Classifier Performance After a Covariate Distributional Shiftcited by 3
50 most cited of 155 All 155 (JSON)
- 2026Brain-Token Learning: Microstate-Based Tokenization and Multi-Scale Interaction for Long-Horizon EEG Sequence Modeling21 Sep 2026
- 2026Beyond Flattened Tokens: Structure-Preserving EEG Decoding with Reusable TriDim Blocks17 Sep 2026
- 2026RobustSeiz: An Open-Source Framework for Benchmarking the Robustness of EEG Seizure Detection Models3 Sep 2026
- 2026Virtual iEEG from Scalp EEG: Charting the Landscape of Source Imaging, Intracranial Inference and Reconstruction27 Aug 2026
- 2026Frequency-Decorrelated Temporal Ensembles for EEG--fNIRS Imagined-Handwriting Decoding4 Aug 2026
- 2026ATCNet-CIAM for Multi-Session Motor Imagery EEG Signal Classification26 Jul 2026
- 2026Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space24 Jul 2026
- 2026Transition-Related Potentials as Markers of Narrative Comprehension in Continuous EEG22 Jul 2026
- 2026DiffEEG: A Self-Supervised Denoising Diffusion Model for Learning EEG Generic Representations13 Jul 2026
- 2026EEG-to-Report: An Annotation and Feature-Text Framework for Training Language Models on Clinical EEG3 Jul 2026
- 2026Towards Robust EEG Decoding Based on Riemannian Self-Attention24 Jun 2026
- 2026Learning aligned EEG representations with subject-specific encoders15 Jun 2026
38 more
- 2026Spatially Masked Regression Reveals Local and Distributed Predictability in Electrophysiological Recordings9 Jun 2026
- 2026CG-MambaNet: A spatiotemporal framework for cross-patient epileptic seizure prediction using CNN-GCN-Mamba-BiLSTM with event-level clinical evaluation6 Jun 2026
- 2026ADAPTOOD: Uncertainty-Aware Fine-Tuning for Out-of-Distribution ECG Time Series Models2 Jun 2026
- 2026BioFormer: Rethinking Cross-Subject Generalization via Spectral Structural Alignment in Biomedical Time-Series21 May 2026
- 2026AIM: Adversarial Information Masking for Faithfulness Evaluation of Saliency Maps16 May 2026
- 2026Same Brain, Different Prediction: How Preprocessing Choices Undermine EEG Decoding Reliability8 May 2026
- 2026A Machine Learning Framework for EEG-Based Prediction of Treatment Efficacy in Chronic Neck Pain5 May 2026
- 2026Structure-Guided Diffusion Model for EEG-Based Visual Cognition Reconstruction24 Apr 2026
- 2026Leakage-Audited Benchmarking Reveals Limited Evidence for Cross-Subject Auditory-Evoked EEG Vowel Perception Decoding22 Apr 2026
- 2026Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction17 Mar 2026
- 2026Synthetic Data Generation for Brain-Computer Interfaces: Overview, Benchmarking, and Future Directions11 Mar 2026
- 2026LAtte: Hyperbolic Lorentz Attention for Cross-Subject EEG Classification11 Mar 2026
- 2026Online decoding of rat self-paced locomotion speed from EEG using recurrent neural networks20 Feb 2026
- 2026BrainRVQ: A High-Fidelity EEG Foundation Model via Dual-Domain Residual Quantization and Hierarchical Autoregression18 Feb 2026
- 2026ASPEN: Spectral-Temporal Fusion for Cross-Subject Brain Decoding18 Feb 2026
- 2026Decentralized Attention Fails Centralized Signals: Rethinking Transformers for Medical Time Series9 Feb 2026
- 2026Geometry- and Relation-Aware Diffusion for EEG Super-Resolution2 Feb 2026
- 2026Temporal Context and Architecture: A Benchmark for Naturalistic EEG Decoding29 Jan 2026
- 2026Cross-Sensory Brain Passage Retrieval: Scaling Beyond Visual to Audio20 Jan 2026
- 2026RL-BioAug: Label-Efficient Reinforcement Learning for Self-Supervised EEG Representation Learning20 Jan 2026
- 2026ConvMambaNet: A Hybrid CNN-Mamba State Space Architecture for Accurate and Real-Time EEG Seizure Detection19 Jan 2026
- 2026Affect and Effect: Limitations of regularisation-based continual learning in EEG-based emotion classification9 Jan 2026
- 2025Channel Selected Stratified Nested Cross Validation for Clinically Relevant EEG Based Parkinsons Disease Detection28 Dec 2025
- 2025Modified TSception for Analyzing Driver Drowsiness and Mental Workload from EEG25 Dec 2025
- 2025Deep Learning Classification of EEG Responses to Multi-Dimensional Transcranial Electrical Stimulation23 Dec 2025
- 2025Decoding Motor Behavior Using Deep Learning and Reservoir Computing7 Dec 2025
- 2025SSDLabeler: Realistic semi-synthetic data generation for multi-label artifact classification in EEG5 Dec 2025
- 2025Rethinking Generalized BCIs: Benchmarking 340,000+ Unique Algorithmic Configurations for EEG Mental Command Decoding2 Dec 2025
- 2025EVA-Net: Interpretable Anomaly Detection for Brain Health via Learning Continuous Aging Prototypes from One-Class EEG Cohorts19 Nov 2025
- 2025Informed Bootstrap Augmentation Improves EEG Decoding15 Nov 2025
- 2025Automated interictal epileptic spike detection from simple and noisy annotations in MEG data24 Oct 2025
- 2025SingLEM: Single-Channel Large EEG Model22 Sep 2025
- 2025Personalization on a Budget: Minimally-Labeled Continual Learning for Resource-Efficient Seizure Detection17 Sep 2025
- 2025ADHDeepNet From Raw EEG to Diagnosis: Improving ADHD Diagnosis through Temporal-Spatial Processing, Adaptive Attention Mechanisms, and Explainability in Raw EEG Signals10 Sep 2025
- 2025ArtifactGen: Benchmarking WGAN-GP vs Diffusion for Label-Aware EEG Artifact Synthesis9 Sep 2025
- 2025Accuracy-Constrained CNN Pruning for Efficient and Reliable EEG-Based Seizure Detection5 Sep 2025
- 2025Machine-learning competition to grade EEG background patterns in newborns with hypoxic-ischaemic encephalopathy27 Aug 2025
- 2025Foundation Models for Cross-Domain EEG Analysis Application: A Survey21 Aug 2025
50 newest of 155 All 155 (JSON)
- 2024BioDiffusion: A Versatile Diffusion Model for Biomedical Signal Synthesiscited by 9
- 2026Geometry- and Relation-Aware Diffusion for EEG Super-Resolutioncited by 1
- 2026Structure-Guided Diffusion Model for EEG-Based Visual Cognition Reconstructioncited by 0
- 2026DiffEEG: A Self-Supervised Denoising Diffusion Model for Learning EEG Generic Representationscited by 0
- 2026DiffEEG: A Self-Supervised Denoising Diffusion Model for Learning EEG Generic Representations13 Jul 2026
- 2026Structure-Guided Diffusion Model for EEG-Based Visual Cognition Reconstruction24 Apr 2026
- 2026Geometry- and Relation-Aware Diffusion for EEG Super-Resolution2 Feb 2026
- 2024BioDiffusion: A Versatile Diffusion Model for Biomedical Signal Synthesis12 Jan 2024
- 2025FEMBA: Efficient and Scalable EEG Analysis with a Bidirectional Mamba Foundation Modelcited by 15
- 2024Benchmarking Neural Decoding Backbones towards Enhanced On-edge iBCI Applicationscited by 2
- 2026ConvMambaNet: A Hybrid CNN-Mamba State Space Architecture for Accurate and Real-Time EEG Seizure Detectioncited by 1
- 2026CG-MambaNet: A spatiotemporal framework for cross-patient epileptic seizure prediction using CNN-GCN-Mamba-BiLSTM with event-level clinical evaluationcited by 0
- 2026CG-MambaNet: A spatiotemporal framework for cross-patient epileptic seizure prediction using CNN-GCN-Mamba-BiLSTM with event-level clinical evaluation6 Jun 2026
- 2026ConvMambaNet: A Hybrid CNN-Mamba State Space Architecture for Accurate and Real-Time EEG Seizure Detection19 Jan 2026
- 2025FEMBA: Efficient and Scalable EEG Analysis with a Bidirectional Mamba Foundation Model10 Feb 2025
- 2024Benchmarking Neural Decoding Backbones towards Enhanced On-edge iBCI Applications8 Jun 2024
- 2021BENDR: using transformers and a contrastive self-supervised learning task to learn from massive amounts of EEG datacited by 194
- 2022Decoding speech perception from non-invasive brain recordingscited by 129
- 2023Brain decoding: toward real-time reconstruction of visual perceptioncited by 64
- 2021FBCNet: A Multi-view Convolutional Neural Network for Brain-Computer Interfacecited by 54
- 2024EEG2Rep: Enhancing Self-supervised EEG Representation Through Informative Masked Inputscited by 48
- 2022MAtt: A Manifold Attention Network for EEG Decodingcited by 43
- 2021Automatic Sleep Staging of EEG Signals: Recent Development, Challenges, and Future Directionscited by 41
- 2021AI-based Reconstruction for Fast MRI -- A Systematic Review and Meta-analysiscited by 38
- 2022Data augmentation for learning predictive models on EEG: a systematic comparisoncited by 32
- 2025EEG Foundation Models: A Critical Review of Current Progress and Future Directionscited by 30
- 2024The largest EEG-based BCI reproducibility study for open science: the MOABB benchmarkcited by 28
- 2021CADDA: Class-wise Automatic Differentiable Data Augmentation for EEG Signalscited by 22
12 most cited of 145 All 145 (JSON)
- 2026Brain-Token Learning: Microstate-Based Tokenization and Multi-Scale Interaction for Long-Horizon EEG Sequence Modeling21 Sep 2026
- 2026Beyond Flattened Tokens: Structure-Preserving EEG Decoding with Reusable TriDim Blocks17 Sep 2026
- 2026RobustSeiz: An Open-Source Framework for Benchmarking the Robustness of EEG Seizure Detection Models3 Sep 2026
- 2026Virtual iEEG from Scalp EEG: Charting the Landscape of Source Imaging, Intracranial Inference and Reconstruction27 Aug 2026
- 2026Frequency-Decorrelated Temporal Ensembles for EEG--fNIRS Imagined-Handwriting Decoding4 Aug 2026
- 2026ATCNet-CIAM for Multi-Session Motor Imagery EEG Signal Classification26 Jul 2026
- 2026Subject-Level Heterogeneity in EEG Motor Imagery Decoding: A Large-Scale Benchmark and Portfolio-Based Reduction of the Search Space24 Jul 2026
- 2026Transition-Related Potentials as Markers of Narrative Comprehension in Continuous EEG22 Jul 2026
- 2026EEG-to-Report: An Annotation and Feature-Text Framework for Training Language Models on Clinical EEG3 Jul 2026
- 2026Towards Robust EEG Decoding Based on Riemannian Self-Attention24 Jun 2026
- 2026Learning aligned EEG representations with subject-specific encoders15 Jun 2026
- 2026Spatially Masked Regression Reveals Local and Distributed Predictability in Electrophysiological Recordings9 Jun 2026
12 newest of 145 All 145 (JSON)