mlsanityData to 7 Oct 2026

Paper2Code: Automating Code Generation from Scientific Papers in Machine Learning

arXiv 2504.17192 ↗First posted 24 Apr 2025cs.CLcited by 67

Not on the map. Why?

Cited by 25 in LLM agents and tool use, but placed by its own abstract, which didn’t fit.

Abstract (arXiv)

Despite the rapid growth of machine learning research, corresponding code implementations are often unavailable, making it slow and labor-intensive for researchers to reproduce results and build upon prior work. In the meantime, recent Large Language Models (LLMs) excel at understanding scientific documents and generating high-quality code. Inspired by this, we introduce PaperCoder, a multi-agent LLM framework that transforms machine learning papers into operational code repositories. PaperCoder operates in three stages: planning, where it constructs a high-level roadmap, designs the system architecture with diagrams, identifies file dependencies, and generates configuration files; analysis, which focuses on interpreting implementation-specific details; and generation, where modular, dependency-aware code is produced. Moreover, each phase is instantiated through a set of specialized agents designed to collaborate effectively across the pipeline. We then evaluate PaperCoder on generating code implementations from machine learning papers based on both model-based and human evaluations, particularly from the authors of those papers, with author-released repositories as ground truth if available. Our results demonstrate the effectiveness of PaperCoder in creating high-quality, faithful implementations. Furthermore, it consistently shows strengths in the recently released PaperBench benchmark, surpassing strong baselines by substantial margins. Code is available at: https://github.com/going-doer/Paper2Code.

Key facts. Cited by 67 papers in the map (data through 7 Oct 2026). Builds on 47 of its 59 references that are in the map. First posted on arXiv 24 Apr 2025.

Builds on

47 of 59 references.

References · 47

  1. 2017Attention Is All You Needcited by 59,932
  2. 2023GPT-4 Technical Reportcited by 18,132
  3. 2023Judging LLM-as-a-Judge with MT-Bench and Chatbot Arenacited by 8,393
  4. 2022ReAct: Synergizing Reasoning and Acting in Language Modelscited by 8,355
  5. 2021Evaluating Large Language Models Trained on Codecited by 8,053
  6. 2021Program Synthesis with Large Language Modelscited by 3,509
  7. 2024Gemini 1.5: Unlocking multimodal understanding across millions of tokens of contextcited by 3,175
  8. 2023G-Eval: NLG Evaluation using GPT-4 with Better Human Alignmentcited by 2,205
  9. 2024LiveCodeBench: Holistic and Contamination Free Evaluation of Large Language Models for Codecited by 1,906
  10. 2023MetaGPT: Meta Programming for A Multi-Agent Collaborative Frameworkcited by 1,761
  11. 2022Competition-Level Code Generation with AlphaCodecited by 1,427
  12. 2024Qwen2.5-Coder Technical Reportcited by 1,151
35 more
  1. 2024The AI Scientist: Towards Fully Automated Open-Ended Scientific Discoverycited by 1,002
  2. 2023ChatDev: Communicative Agents for Software Developmentcited by 893
  3. 2021Measuring Coding Challenge Competence With APPScited by 879
  4. 2024MLE-bench: Evaluating Machine Learning Agents on Machine Learning Engineeringcited by 429
  5. 2025Agent Laboratory: Using LLM Agents as Research Assistantscited by 405
  6. 2024Agentless: Demystifying LLM-based Software Engineering Agentscited by 400
  7. 2025The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Searchcited by 375
  8. 2022CodeT: Code Generation with Generated Testscited by 369
  9. 2023GPTScore: Evaluate as You Desirecited by 357
  10. 2023RepoCoder: Repository-Level Code Completion Through Iterative Retrieval and Generationcited by 357
  11. 2024Can LLMs Generate Novel Research Ideas? A Large-Scale Human Study with 100+ NLP Researcherscited by 348
  12. 2023RepoBench: Benchmarking Repository-Level Code Auto-Completion Systemscited by 346
  13. 2023MLAgentBench: Evaluating Language Agents on Machine Learning Experimentationcited by 339
  14. 2024DeepSeek-Coder-V2: Breaking the Barrier of Closed-Source Models in Code Intelligencecited by 325
  15. 2020Improving Reproducibility in Machine Learning Research (A Report from the NeurIPS 2019 Reproducibility Program)cited by 318
  16. 2025PaperBench: Evaluating AI's Ability to Replicate AI Researchcited by 286
  17. 2024ResearchAgent: Iterative Research Idea Generation over Scientific Literature with Large Language Modelscited by 200
  18. 2023Can large language models provide useful feedback on research papers? A large-scale empirical analysiscited by 195
  19. 2023MathCoder: Seamless Code Integration in LLMs for Enhanced Mathematical Reasoningcited by 155
  20. 2024CycleResearcher: Improving Automated Research via Automated Reviewcited by 142
  21. 2023Large Language Models for Automated Open-domain Scientific Hypotheses Discoverycited by 100
  22. 2024MARG: Multi-Agent Review Generation for Scientific Paperscited by 98
  23. 2024Chain of Ideas: Revolutionizing Research Via Novel Idea Development with LLM Agentscited by 94
  24. 2024RepoGraph: Enhancing AI Software Engineering with Repository-level Code Graphcited by 88
  25. 2024AutoML-Agent: A Multi-Agent LLM Framework for Full-Pipeline AutoMLcited by 84
  26. 2024RepoAgent: An LLM-Powered Open-Source Framework for Repository-level Code Documentation Generationcited by 69
  27. 2023CodeScore: Evaluating Code Generation by Learning Code Executioncited by 66
  28. 2023MLCopilot: Unleashing the Power of Large Language Models in Solving Machine Learning Taskscited by 66
  29. 2023ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Codecited by 63
  30. 2023Large Language Models are Zero Shot Hypothesis Proposerscited by 45
  31. 2025SciReplicate-Bench: Benchmarking LLMs in Agent-driven Algorithmic Reproduction from Research Paperscited by 42
  32. 2023ClarifyGPT: Empowering LLM-based Code Generation with Intention Clarificationcited by 37
  33. 2024ChatGPT as Research Scientist: Probing GPT's Capabilities as a Research Librarian, Research Ethicist, Data Generator and Data Predictorcited by 21
  34. 2025OmniScience: A Domain-Specialized LLM for Scientific Reasoning and Discoverycited by 20
  35. 2023Reproducibility in NLP: What Have We Learned from the Checklist?cited by 18

Built on by

Cited by year (2026 to 7 Oct)

Citing papers per year: 2025: 24; 2026: 43.

67 papers.

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  1. 2025MLR-Bench: Evaluating AI Agents on Open-Ended Machine Learning Researchcited by 57
  2. 2026FeatureBench: Benchmarking Agentic Coding for Complex Feature Developmentcited by 30
  3. 2025AutoReproduce: Automatic AI Experiment Reproduction with Paper Lineagecited by 29
  4. 2025When AI Co-Scientists Fail: SPOT-a Benchmark for Automated Verification of Scientific Researchcited by 25
  5. 2025Paper2Video: Automatic Video Generation from Scientific Paperscited by 23
  6. 2025ThinKV: Thought-Adaptive KV Cache Compression for Efficient Reasoning Modelscited by 21
  7. 2025AI Scientists Fail Without Strong Implementation Capabilitycited by 20
  8. 2025Paper2Agent: Reimagining Research Papers As Interactive and Reliable AI Agentscited by 19
  9. 2025AutoP2C: An LLM-Based Agent Framework for Code Repository Generation from Multimodal Content in Academic Paperscited by 18
  10. 2025RPG: A Repository Planning Graph for Unified and Scalable Codebase Generationcited by 18
  11. 2025RExBench: Can coding agents autonomously implement AI research extensions?cited by 17
  12. 2025Scientific Algorithm Discovery by Augmenting AlphaEvolve with Deep Researchcited by 16
38 more
  1. 2026Toward Autonomous Long-Horizon Engineering for ML Researchcited by 15
  2. 2026The Last Human-Written Paper: Agent-Native Research Artifactscited by 12
  3. 2025A Retrieval-Augmented Generation Approach to Extracting Algorithmic Logic from Neural Networkscited by 11
  4. 2026AutoResearchBench: Benchmarking AI Agents on Complex Scientific Literature Discoverycited by 10
  5. 2025Reflective Paper-to-Code Reproduction Enabled by Fine-Grained Verificationcited by 9
  6. 2026SciCoQA: Quality Assurance for Scientific Paper--Code Alignmentcited by 9
  7. 2026Can Coding Agents Reproduce Findings in Computational Materials Science?cited by 9
  8. 2025Yo'City: Personalized and Boundless 3D Realistic City Scene Generation via Self-Critic Expansioncited by 8
  9. 2025PosterForest: Hierarchical Multi-Agent Collaboration for Scientific Poster Generationcited by 7
  10. 2026What Papers Don't Tell You: Recovering Tacit Knowledge for Automated Paper Reproductioncited by 6
  11. 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gapcited by 6
  12. 2025LockForge: Automating Paper-to-Code for Logic Locking with Multi-Agent Reasoning LLMscited by 5
  13. 2026Read the Paper, Write the Code: Agentic Reproduction of Social-Science Resultscited by 5
  14. 2026VeriCache: Turning Lossy KV Cache into Lossless LLM Inferencecited by 5
  15. 2025Actions Speak Louder than Prompts: A Large-Scale Study of LLMs for Graph Inferencecited by 4
  16. 2026Training AI Scientists to Replicate Researchcited by 4
  17. 2025Idea2Plan: Exploring AI-Powered Research Planningcited by 3
  18. 2026Memory Transfer Learning: How Memories are Transferred Across Domains in Coding Agentscited by 3
  19. 2026Constraint Decay: The Fragility of LLM Agents in Backend Code Generationcited by 3
  20. 2026Agentic Discovery of Neural Architectures: AIRA-Compose and AIRA-Designcited by 3
  21. 2025CelloAI: Leveraging Large Language Models for HPC Software Development in High Energy Physicscited by 2
  22. 2025MirrorMind: Empowering OmniScientist with the Expert Perspectives and Collective Knowledge of Human Scientistscited by 2
  23. 2026Benchmarking PhD-Level Coding in 3D Geometric Computer Visioncited by 2
  24. 2026ReproRepo: Scaling Reproducibility Audits with GitHub Repository Issuescited by 2
  25. 2026Agentic Publication Protocol: An Attempt to Modernize Scientific Publicationcited by 2
  26. 2026Architectural Implications of Agentic AI Workflowscited by 2
  27. 2026Repo0: Design-Driven Zero-to-All Code Generationcited by 2
  28. 2026Overview of the NLPCC 2026 Shared Task 11: Agent-Based Experiment Reproduction from Scientific Paperscited by 2
  29. 2025From Static to Dynamic: Adaptive Monte Carlo Search for Mathematical Process Supervisioncited by 1
  30. 2025Enhancing Automated Paper Reproduction via Prompt-Free Collaborative Agentscited by 1
  31. 2025HybridQuestion: Human-AI Collaboration for Identifying High-Impact Research Questionscited by 1
  32. 2026NERFIFY: A Multi-Agent Framework for Turning NeRF Papers into Codecited by 1
  33. 2026RESCORE: LLM-Driven Simulation Recovery in Control Systems Research Paperscited by 1
  34. 2026ARA: Agentic Reproducibility Assessment For Scalable Support Of Scientific Peer-Reviewcited by 1
  35. 2026From paper to benchmark: agentic, framework-based reproduction of under-specified methods in machine health intelligencecited by 1
  36. 2026Coding-agents can replicate scientific machine learning paperscited by 1
  37. 2026VERITAS: Towards a General-Purpose Replication Tool for Scientific Researchcited by 1
  38. 2026SA-Bench: Evaluating Semantic Alignment in LLM-Based Paper Reproductioncited by 1

50 most cited of 67 All 67 (JSON)

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  6. 2026HiRAS: A Hierarchical Multi-Agent Framework for Paper-to-Code Generation and Execution
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