Recent Advances in Automated Question Answering In Biomedical Domain
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Abstract (arXiv)
The objective of automated Question Answering (QA) systems is to provide answers to user queries in a time efficient manner. The answers are usually found in either databases (or knowledge bases) or a collection of documents commonly referred to as the corpus. In the past few decades there has been a proliferation of acquisition of knowledge and consequently there has been an exponential growth in new scientific articles in the field of biomedicine. Therefore, it has become difficult to keep track of all the information in the domain, even for domain experts. With the improvements in commercial search engines, users can type in their queries and get a small set of documents most relevant for answering their query, as well as relevant snippets from the documents in some cases. However, it may be still tedious and time consuming to manually look for the required information or answers. This has necessitated the development of efficient QA systems which aim to find exact and precise answers to user provided natural language questions in the domain of biomedicine. In this paper, we introduce the basic methodologies used for developing general domain QA systems, followed by a thorough investigation of different aspects of biomedical QA systems, including benchmark datasets and several proposed approaches, both using structured databases and collection of texts. We also explore the limitations of current systems and explore potential avenues for further advancement.
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References · 76
- 2017Attention Is All You Needcited by 59,932
- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,204
- 2020Language Models are Few-Shot Learnerscited by 32,199
- 2019Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformercited by 14,491
- 2019RoBERTa: A Robustly Optimized BERT Pretraining Approachcited by 13,266
- 2020Retrieval-Augmented Generation for Knowledge-Intensive NLP Taskscited by 9,160
- 2019BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehensioncited by 5,874
- 2016SQuAD: 100,000+ Questions for Machine Comprehension of Textcited by 4,115
- 2020Dense Passage Retrieval for Open-Domain Question Answeringcited by 3,779
- 2018HotpotQA: A Dataset for Diverse, Explainable Multi-hop Question Answeringcited by 3,686
- 2013Distributed Representations of Words and Phrases and their Compositionalitycited by 3,462
- 2017TriviaQA: A Large Scale Distantly Supervised Challenge Dataset for Reading Comprehensioncited by 2,895
38 more
- 2017Billion-scale similarity search with GPUscited by 2,477
- 2018Deep contextualized word representationscited by 2,285
- 2020REALM: Retrieval-Augmented Language Model Pre-Trainingcited by 2,126
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,935
- 2019Language Models as Knowledge Bases?cited by 1,922
- 2020Don't Stop Pretraining: Adapt Language Models to Domains and Taskscited by 1,548
- 2018Know What You Don't Know: Unanswerable Questions for SQuADcited by 1,538
- 2020What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Examscited by 1,324
- 2019PubMedQA: A Dataset for Biomedical Research Question Answeringcited by 1,271
- 2020Leveraging Passage Retrieval with Generative Models for Open Domain Question Answeringcited by 1,203
- 2020Domain-Specific Language Model Pretraining for Biomedical Natural Language Processingcited by 996
- 2014Embedding Entities and Relations for Learning and Inference in Knowledge Basescited by 929
- 2016Complex Embeddings for Simple Link Predictioncited by 897
- 2017Reading Wikipedia to Answer Open-Domain Questionscited by 777
- 2019Latent Retrieval for Weakly Supervised Open Domain Question Answeringcited by 691
- 2018CoQA: A Conversational Question Answering Challengecited by 674
- 2020A Survey on Knowledge Graphs: Representation, Acquisition and Applicationscited by 643
- 2015Bidirectional LSTM-CRF Models for Sequence Taggingcited by 544
- 2019What do you learn from context? Probing for sentence structure in contextualized word representationscited by 436
- 2021QA-GNN: Reasoning with Language Models and Knowledge Graphs for Question Answeringcited by 386
- 2017DeepPath: A Reinforcement Learning Method for Knowledge Graph Reasoningcited by 265
- 2018Modeling polypharmacy side effects with graph convolutional networkscited by 237
- 2020Distilling Knowledge from Reader to Retriever for Question Answeringcited by 226
- 2016Key-Value Memory Networks for Directly Reading Documentscited by 223
- 2020Sparse, Dense, and Attentional Representations for Text Retrievalcited by 213
- 2019Assessing BERT's Syntactic Abilitiescited by 191
- 2020Generation-Augmented Retrieval for Open-domain Question Answeringcited by 186
- 2019PullNet: Open Domain Question Answering with Iterative Retrieval on Knowledge Bases and Textcited by 182
- 2017Variational Reasoning for Question Answering with Knowledge Graphcited by 170
- 2018Open Domain Question Answering Using Early Fusion of Knowledge Bases and Textcited by 167
- 2020Pre-training Tasks for Embedding-based Large-scale Retrievalcited by 153
- 2018Lessons from Natural Language Inference in the Clinical Domaincited by 149
- 2018Dissecting Contextual Word Embeddings: Architecture and Representationcited by 146
- 2015Large-scale Simple Question Answering with Memory Networkscited by 127
- 2017A Deep Relevance Matching Model for Ad-hoc Retrievalcited by 126
- 2018Embedding Logical Queries on Knowledge Graphscited by 120
- 2018Multi-Hop Knowledge Graph Reasoning with Reward Shapingcited by 102
- 2019HEAD-QA: A Healthcare Dataset for Complex Reasoningcited by 100
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