A Survey of Graph Neural Networks in Real world: Imbalance, Noise, Privacy and OOD Challenges
Not on the map. Why?
Abstract (arXiv)
Graph-structured data exhibits universality and widespread applicability across diverse domains, such as social network analysis, biochemistry, financial fraud detection, and network security. Significant strides have been made in leveraging Graph Neural Networks (GNNs) to achieve remarkable success in these areas. However, in real-world scenarios, the training environment for models is often far from ideal, leading to substantial performance degradation of GNN models due to various unfavorable factors, including imbalance in data distribution, the presence of noise in erroneous data, privacy protection of sensitive information, and generalization capability for out-of-distribution (OOD) scenarios. To tackle these issues, substantial efforts have been devoted to improving the performance of GNN models in practical real-world scenarios, as well as enhancing their reliability and robustness. In this paper, we present a comprehensive survey that systematically reviews existing GNN models, focusing on solutions to the four mentioned real-world challenges including imbalance, noise, privacy, and OOD in practical scenarios that many existing reviews have not considered. Specifically, we first highlight the four key challenges faced by existing GNNs, paving the way for our exploration of real-world GNN models. Subsequently, we provide detailed discussions on these four aspects, dissecting how these solutions contribute to enhancing the reliability and robustness of GNN models. Last but not least, we outline promising directions and offer future perspectives in the field.
Key facts. Cited by 54 papers in the map (data through 7 Oct 2026). Builds on 148 of its 249 references that are in the map. First posted on arXiv 7 Mar 2024.
Builds on
148 of 249 references.
References · 148
- 2020A Simple Framework for Contrastive Learning of Visual Representationscited by 11,979
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
- 2016Communication-Efficient Learning of Deep Networks from Decentralized Datacited by 7,592
- 2017Inductive Representation Learning on Large Graphscited by 6,284
- 2020Bootstrap your own latent: A new approach to self-supervised Learningcited by 4,712
- 2018How Powerful are Graph Neural Networks?cited by 4,355
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2019Advances and Open Problems in Federated Learningcited by 3,021
- 2019A Comprehensive Survey on Graph Neural Networkscited by 2,906
- 2016A Baseline for Detecting Misclassified and Out-of-Distribution Examples in Neural Networkscited by 2,362
- 2019Class-Balanced Loss Based on Effective Number of Samplescited by 1,239
38 more
- 2018Deep Graph Infomaxcited by 1,101
- 2018Link Prediction Based on Graph Neural Networkscited by 829
- 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 786
- 2019DropEdge: Towards Deep Graph Convolutional Networks on Node Classificationcited by 679
- 2018FastGCN: Fast Learning with Graph Convolutional Networks via Importance Samplingcited by 583
- 2019Self-Attention Graph Poolingcited by 421
- 2019Diffusion Improves Graph Learningcited by 414
- 2017Graph Signal Processing: Overview, Challenges and Applicationscited by 409
- 2018Adversarial Attacks on Neural Networks for Graph Datacited by 395
- 2019How does Disagreement Help Generalization against Label Corruption?cited by 390
- 2020Graph Structure Learning for Robust Graph Neural Networkscited by 368
- 2018Adversarial Attack on Graph Structured Datacited by 300
- 2020Auditing Differentially Private Machine Learning: How Private is Private SGD?cited by 213
- 2020Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddingscited by 212
- 2019Topology Attack and Defense for Graph Neural Networks: An Optimization Perspectivecited by 196
- 2020GNNGuard: Defending Graph Neural Networks against Adversarial Attackscited by 195
- 2022Discovering Invariant Rationales for Graph Neural Networkscited by 186
- 2022Rethinking Graph Neural Networks for Anomaly Detectioncited by 185
- 2019On the equivalence between graph isomorphism testing and function approximation with GNNscited by 172
- 2018Adversarial Attack and Defense on Graph Data: A Surveycited by 166
- 2022Handling Distribution Shifts on Graphs: An Invariance Perspectivecited by 163
- 2020Membership Leakage in Label-Only Exposurescited by 156
- 2019AliGraph: A Comprehensive Graph Neural Network Platformcited by 152
- 2021GraphSMOTE: Imbalanced Node Classification on Graphs with Graph Neural Networkscited by 147
- 2022Learning Causally Invariant Representations for Out-of-Distribution Generalization on Graphscited by 144
- 2022GOOD: A Graph Out-of-Distribution Benchmarkcited by 140
- 2021Graph Unlearningcited by 129
- 2020Learning to Drop: Robust Graph Neural Network via Topological Denoisingcited by 127
- 2020Backdoor Attacks to Graph Neural Networkscited by 126
- 2019Stability Properties of Graph Neural Networkscited by 125
- 2020Disentangled Graph Collaborative Filteringcited by 118
- 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainabilitycited by 118
- 2020Stealing Links from Graph Neural Networkscited by 114
- 2021SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networkscited by 108
- 2021Causal Attention for Interpretable and Generalizable Graph Classificationcited by 108
- 2022Out-Of-Distribution Generalization on Graphs: A Surveycited by 97
- 2021ProtGNN: Towards Self-Explaining Graph Neural Networkscited by 96
- 2020Uncertainty Aware Semi-Supervised Learning on Graph Datacited by 95
50 most cited of 148 All 148 (JSON)
Built on by
Citing papers per year: 2024: 22; 2025: 20; 2026: 12.
54 papers.
Sort:
By area:
- 2024Revisiting Multi-modal Emotion Learning with Broad State Space Models and Probability-guidance Fusioncited by 33
- 2024Revisiting Multimodal Emotion Recognition in Conversation from the Perspective of Graph Spectrumcited by 33
- 2024Towards Graph Contrastive Learning: A Survey and Beyondcited by 26
- 2024IDEA: A Flexible Framework of Certified Unlearning for Graph Neural Networkscited by 22
- 2024Unifying Unsupervised Graph-Level Anomaly Detection and Out-of-Distribution Detection: A Benchmarkcited by 18
- 2024SA-GDA: Spectral Augmentation for Graph Domain Adaptationcited by 16
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 16
- 2025ProtoMol: Enhancing Molecular Property Prediction via Prototype-Guided Multimodal Learningcited by 11
- 2025Social Network User Profiling for Anomaly Detection Based on Graph Neural Networkscited by 9
- 2024LOGIN: A Large Language Model Consulted Graph Neural Network Training Frameworkcited by 8
- 2025CATS: Mitigating Correlation Shift for Multivariate Time Series Classificationcited by 7
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equationcited by 6
38 more
- 2024Cluster-guided Contrastive Class-imbalanced Graph Classificationcited by 6
- 2025OCRT: Boosting Foundation Models in the Open World with Object-Concept-Relation Triadcited by 6
- 2024Relieving Universal Label Noise for Unsupervised Visible-Infrared Person Re-Identification by Inferring from Neighborscited by 5
- 2025ASIL: Augmented Structural Information Learning for Deep Graph Clustering in Hyperbolic Spacecited by 4
- 2025Incomplete Graph Learning: A Comprehensive Surveycited by 3
- 2024DisCo: Graph-Based Disentangled Contrastive Learning for Cold-Start Cross-Domain Recommendationcited by 2
- 2025Scalable Attribute-Missing Graph Clustering via Neighborhood Differentiationcited by 2
- 2025Intellectual Property in Graph-Based Machine Learning as a Service: Attacks and Defensescited by 2
- 2024Conditional Shift-Robust Conformal Prediction for Graph Neural Networkcited by 1
- 2024Entity-Aware Self-Attention and Contextualized GCN for Enhanced Relation Extraction in Long Sentencescited by 1
- 2024Enhancing Object Detection Accuracy in Autonomous Vehicles Using Synthetic Datacited by 1
- 2024Joint Combinatorial Node Selection and Resource Allocations in the Lightning Network using Attention-based Reinforcement Learningcited by 1
- 2025SliceGX: Layer-wise GNN Explanation with Model-slicingcited by 1
- 2025Are LLMs Better GNN Helpers? Rethinking Robust Graph Learning under Deficiencies with Iterative Refinementcited by 1
- 2025Learning Fair Graph Representations with Multi-view Information Bottleneckcited by 1
- 2026Identifying and Correcting Label Noise for Robust GNNs via Influence Contradictioncited by 1
- 2026Beyond One-Size-Fits-All: Adaptive Subgraph Denoising for Zero-Shot Graph Learning with Large Language Modelscited by 1
- 2026LLM-Enhanced Energy Contrastive Learning for Out-of-Distribution Detection in Text-Attributed Graphscited by 1
- 2024Utilizing Graph Generation for Enhanced Domain Adaptive Object Detectioncited by 0
- 2024Core Knowledge Learning Framework for Graph Adaptation and Scalability Learningcited by 0
- 2024Entity-Aware Biaffine Attention Model for Improved Constituent Parsing with Reduced Entity Violationscited by 0
- 2024Graffin: Stand for Tails in Imbalanced Node Classificationcited by 0
- 2024BetaExplainer: A Probabilistic Method to Explain Graph Neural Networkscited by 0
- 2024Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distributioncited by 0
- 2025Catch Causal Signals from Edges for Label Imbalance in Graph Classificationcited by 0
- 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithmscited by 0
- 2025Federated Spectral Graph Transformers Meet Neural Ordinary Differential Equations for Non-IID Graphscited by 0
- 2025EDN: A Novel Edge-Dependent Noise Model for Graph Datacited by 0
- 2025DESIGN: Encrypted GNN Inference via Server-Side Input Graph Pruningcited by 0
- 2025Divide-Then-Rule: A Cluster-Driven Hierarchical Interpolator for Attribute-Missing Graphscited by 0
- 2025Geometry-Aware Spiking Graph Neural Networkcited by 0
- 2025Multi-View Graph Feature Propagation for Privacy Preservation and Feature Sparsitycited by 0
- 2025Feature-Enhanced Graph Neural Networks for Classification of Synthetic Graph Generative Models: A Benchmarking Studycited by 0
- 2026BAED: a New Paradigm for Few-shot Graph Learning with Explanation in the Loopcited by 0
- 2026Efficient and Scalable Granular-ball Graph Coarsening Method for Large-scale Graph Node Classificationcited by 0
- 2026Robustness of Graph Self-Supervised Learning to Real-World Noise: A Case Study on Text-Driven Biomedical Graphscited by 0
- 2026Graph Computation Meets Circuit Algebra: A Task-Aligned Analysis of Graph Neural Networks for Electronic Design Automationcited by 0
- 2026When Graph Tokens Sink: A Mechanistic Analysis of Graph Language Modelscited by 0
50 most cited of 54 All 54 (JSON)
- 2026Topology-induced Operators Reveal Complementary Graph Representations without Training8 Sep 2026
- 2026How Much Does Message Passing Matter? A Drop-In Study of GNN Layers for Neural Network Graph Regression29 Jul 2026
- 2026Efficient Recommendations via Graph Coarsening and Label Propagation24 Jul 2026
- 2026scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering17 Jun 2026
- 2026When Graph Tokens Sink: A Mechanistic Analysis of Graph Language Models2 Jun 2026
- 2026Graph Computation Meets Circuit Algebra: A Task-Aligned Analysis of Graph Neural Networks for Electronic Design Automation8 May 2026
- 2026Robustness of Graph Self-Supervised Learning to Real-World Noise: A Case Study on Text-Driven Biomedical Graphs6 May 2026
- 2026Efficient and Scalable Granular-ball Graph Coarsening Method for Large-scale Graph Node Classification31 Mar 2026
- 2026LLM-Enhanced Energy Contrastive Learning for Out-of-Distribution Detection in Text-Attributed Graphs19 Mar 2026
- 2026Beyond One-Size-Fits-All: Adaptive Subgraph Denoising for Zero-Shot Graph Learning with Large Language Models3 Mar 2026
- 2026BAED: a New Paradigm for Few-shot Graph Learning with Explanation in the Loop2 Mar 2026
- 2026Identifying and Correcting Label Noise for Robust GNNs via Influence Contradiction24 Jan 2026
38 more
- 2025Feature-Enhanced Graph Neural Networks for Classification of Synthetic Graph Generative Models: A Benchmarking Study20 Dec 2025
- 2025Learning Fair Graph Representations with Multi-view Information Bottleneck29 Oct 2025
- 2025ProtoMol: Enhancing Molecular Property Prediction via Prototype-Guided Multimodal Learning19 Oct 2025
- 2025Multi-View Graph Feature Propagation for Privacy Preservation and Feature Sparsity13 Oct 2025
- 2025Are LLMs Better GNN Helpers? Rethinking Robust Graph Learning under Deficiencies with Iterative Refinement2 Oct 2025
- 2025Intellectual Property in Graph-Based Machine Learning as a Service: Attacks and Defenses27 Aug 2025
- 2025Geometry-Aware Spiking Graph Neural Network9 Aug 2025
- 2025Divide-Then-Rule: A Cluster-Driven Hierarchical Interpolator for Attribute-Missing Graphs12 Jul 2025
- 2025Scalable Attribute-Missing Graph Clustering via Neighborhood Differentiation9 Jul 2025
- 2025DESIGN: Encrypted GNN Inference via Server-Side Input Graph Pruning8 Jul 2025
- 2025SliceGX: Layer-wise GNN Explanation with Model-slicing22 Jun 2025
- 2025EDN: A Novel Edge-Dependent Noise Model for Graph Data13 Jun 2025
- 2025Federated Spectral Graph Transformers Meet Neural Ordinary Differential Equations for Non-IID Graphs16 Apr 2025
- 2025ASIL: Augmented Structural Information Learning for Deep Graph Clustering in Hyperbolic Space14 Apr 2025
- 2025CATS: Mitigating Correlation Shift for Multivariate Time Series Classification5 Apr 2025
- 2025Social Network User Profiling for Anomaly Detection Based on Graph Neural Networks25 Mar 2025
- 2025OCRT: Boosting Foundation Models in the Open World with Object-Concept-Relation Triad24 Mar 2025
- 2025Incomplete Graph Learning: A Comprehensive Survey18 Feb 2025
- 2025Evolving Hard Maximum Cut Instances for Quantum Approximate Optimization Algorithms30 Jan 2025
- 2025Catch Causal Signals from Edges for Label Imbalance in Graph Classification3 Jan 2025
- 2024DisCo: Graph-Based Disentangled Contrastive Learning for Cold-Start Cross-Domain Recommendation19 Dec 2024
- 2024Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distribution18 Dec 2024
- 2024Cluster-guided Contrastive Class-imbalanced Graph Classification17 Dec 2024
- 2024Relieving Universal Label Noise for Unsupervised Visible-Infrared Person Re-Identification by Inferring from Neighbors16 Dec 2024
- 2024BetaExplainer: A Probabilistic Method to Explain Graph Neural Networks16 Dec 2024
- 2024Joint Combinatorial Node Selection and Resource Allocations in the Lightning Network using Attention-based Reinforcement Learning26 Nov 2024
- 2024Enhancing Object Detection Accuracy in Autonomous Vehicles Using Synthetic Data23 Nov 2024
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equation15 Nov 2024
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptation25 Oct 2024
- 2024Entity-Aware Self-Attention and Contextualized GCN for Enhanced Relation Extraction in Long Sentences15 Sep 2024
- 2024Graffin: Stand for Tails in Imbalanced Node Classification9 Sep 2024
- 2024Entity-Aware Biaffine Attention Model for Improved Constituent Parsing with Reduced Entity Violations1 Sep 2024
- 2024SA-GDA: Spectral Augmentation for Graph Domain Adaptation17 Aug 2024
- 2024IDEA: A Flexible Framework of Certified Unlearning for Graph Neural Networks28 Jul 2024
- 2024Core Knowledge Learning Framework for Graph Adaptation and Scalability Learning2 Jul 2024
- 2024Unifying Unsupervised Graph-Level Anomaly Detection and Out-of-Distribution Detection: A Benchmark21 Jun 2024
- 2024LOGIN: A Large Language Model Consulted Graph Neural Network Training Framework22 May 2024
- 2024Conditional Shift-Robust Conformal Prediction for Graph Neural Network20 May 2024
50 newest of 54 All 54 (JSON)
- 2024Revisiting Multimodal Emotion Recognition in Conversation from the Perspective of Graph Spectrumcited by 33
- 2024Towards Graph Contrastive Learning: A Survey and Beyondcited by 26
- 2024IDEA: A Flexible Framework of Certified Unlearning for Graph Neural Networkscited by 22
- 2024Unifying Unsupervised Graph-Level Anomaly Detection and Out-of-Distribution Detection: A Benchmarkcited by 18
- 2024SA-GDA: Spectral Augmentation for Graph Domain Adaptationcited by 16
- 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 16
- 2025ProtoMol: Enhancing Molecular Property Prediction via Prototype-Guided Multimodal Learningcited by 11
- 2025Social Network User Profiling for Anomaly Detection Based on Graph Neural Networkscited by 9
- 2024LOGIN: A Large Language Model Consulted Graph Neural Network Training Frameworkcited by 8
- 2025CATS: Mitigating Correlation Shift for Multivariate Time Series Classificationcited by 7
- 2024DuSEGO: Dual Second-order Equivariant Graph Ordinary Differential Equationcited by 6
- 2024Cluster-guided Contrastive Class-imbalanced Graph Classificationcited by 6
12 most cited of 52 All 52 (JSON)
- 2026Topology-induced Operators Reveal Complementary Graph Representations without Training8 Sep 2026
- 2026How Much Does Message Passing Matter? A Drop-In Study of GNN Layers for Neural Network Graph Regression29 Jul 2026
- 2026Efficient Recommendations via Graph Coarsening and Label Propagation24 Jul 2026
- 2026scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering17 Jun 2026
- 2026When Graph Tokens Sink: A Mechanistic Analysis of Graph Language Models2 Jun 2026
- 2026Graph Computation Meets Circuit Algebra: A Task-Aligned Analysis of Graph Neural Networks for Electronic Design Automation8 May 2026
- 2026Robustness of Graph Self-Supervised Learning to Real-World Noise: A Case Study on Text-Driven Biomedical Graphs6 May 2026
- 2026Efficient and Scalable Granular-ball Graph Coarsening Method for Large-scale Graph Node Classification31 Mar 2026
- 2026LLM-Enhanced Energy Contrastive Learning for Out-of-Distribution Detection in Text-Attributed Graphs19 Mar 2026
- 2026Beyond One-Size-Fits-All: Adaptive Subgraph Denoising for Zero-Shot Graph Learning with Large Language Models3 Mar 2026
- 2026BAED: a New Paradigm for Few-shot Graph Learning with Explanation in the Loop2 Mar 2026
- 2026Identifying and Correcting Label Noise for Robust GNNs via Influence Contradiction24 Jan 2026
12 newest of 52 All 52 (JSON)