Instructional Segment Embedding: Improving LLM Safety with Instruction Hierarchy
On the map: LLM safety and security → Prompt injection and agent security
Abstract (arXiv)
Large Language Models (LLMs) are susceptible to security and safety threats, such as prompt injection, prompt extraction, and harmful requests. One major cause of these vulnerabilities is the lack of an instruction hierarchy. Modern LLM architectures treat all inputs equally, failing to distinguish between and prioritize various types of instructions, such as system messages, user prompts, and data. As a result, lower-priority user prompts may override more critical system instructions, including safety protocols. Existing approaches to achieving instruction hierarchy, such as delimiters and instruction-based training, do not address this issue at the architectural level. We introduce the Instructional Segment Embedding (ISE) technique, inspired by BERT, to modern large language models, which embeds instruction priority information directly into the model. This approach enables models to explicitly differentiate and prioritize various instruction types, significantly improving safety against malicious prompts that attempt to override priority rules. Our experiments on the Structured Query and Instruction Hierarchy benchmarks demonstrate an average robust accuracy increase of up to 15.75% and 18.68%, respectively. Furthermore, we observe an improvement in instruction-following capability of up to 4.1% evaluated on AlpacaEval. Overall, our approach offers a promising direction for enhancing the safety and effectiveness of LLM architectures.
Key facts. Cited by 67 papers in the map (data through 14 Oct 2026). Placed in Prompt injection and agent security, one of 12 directions in LLM safety and security. Builds on 40 of its 54 references that are in the map. First posted on arXiv 9 Oct 2024.
Builds on
40 of 54 references.
Closest ancestors · 11
Same direction, newest first
- 2024The Instruction Hierarchy: Training LLMs to Prioritize Privileged Instructions19 Apr
- 2024Defending Against Indirect Prompt Injection Attacks With Spotlighting20 Mar
- 2024InjecAgent: Benchmarking Indirect Prompt Injections in Tool-Integrated Large Language Model Agents5 Mar
- 2024StruQ: Defending Against Prompt Injection with Structured Queries9 Feb
- 2023Jatmo: Prompt Injection Defense by Task-Specific Finetuning29 Dec
- 2023Assessing Prompt Injection Risks in 200+ Custom GPTs20 Nov
- 2023Tensor Trust: Interpretable Prompt Injection Attacks from an Online Game2 Nov
- 2023Prompt Injection attack against LLM-integrated Applications8 Jun
- 2023Not what you've signed up for: Compromising Real-World LLM-Integrated Applications with Indirect Prompt Injection23 Feb
- 2022Red Teaming Language Models to Reduce Harms: Methods, Scaling Behaviors, and Lessons Learned23 Aug
- 2022Red Teaming Language Models with Language Models7 Feb
Other references · 29
- 2018BERT: Pre-training of Deep Bidirectional Transformers for Language Understandingcited by 40,399
- 2023Llama 2: Open Foundation and Fine-Tuned Chat Modelscited by 13,028
- 2023Judging LLM-as-a-Judge with MT-Bench and Chatbot Arenacited by 8,626
- 2021RoFormer: Enhanced Transformer with Rotary Position Embeddingcited by 4,703
- 2022Training a Helpful and Harmless Assistant with Reinforcement Learning from Human Feedbackcited by 3,720
- 2023Universal and Transferable Adversarial Attacks on Aligned Language Modelscited by 3,104
- 2019ALBERT: A Lite BERT for Self-supervised Learning of Language Representationscited by 2,790
- 2023Jailbreaking Black Box Large Language Models in Twenty Queriescited by 1,420
- 2022WebShop: Towards Scalable Real-World Web Interaction with Grounded Language Agentscited by 1,251
- 2023Enhancing Chat Language Models by Scaling High-quality Instructional Conversationscited by 839
- 2022Ignore Previous Prompt: Attack Techniques For Language Modelscited by 832
- 2024WildChat: 1M ChatGPT Interaction Logs in the Wildcited by 629
17 more
- 2023DecodingTrust: A Comprehensive Assessment of Trustworthiness in GPT Modelscited by 518
- 2024Jailbreaking Leading Safety-Aligned LLMs with Simple Adaptive Attackscited by 486
- 2023Jailbreak and Guard Aligned Language Models with Only Few In-Context Demonstrationscited by 431
- 2022Unnatural Instructions: Tuning Language Models with (Almost) No Human Laborcited by 397
- 2024Improving Alignment and Robustness with Circuit Breakerscited by 322
- 2024SORRY-Bench: Systematically Evaluating Large Language Model Safety Refusalcited by 240
- 2022LinkBERT: Pretraining Language Models with Document Linkscited by 211
- 2024Latent Adversarial Training Improves Robustness to Persistent Harmful Behaviors in LLMscited by 173
- 2024AmpleGCG: Learning a Universal and Transferable Generative Model of Adversarial Suffixes for Jailbreaking Both Open and Closed LLMscited by 172
- 2023Conversational Health Agents: A Personalized LLM-Powered Agent Frameworkcited by 92
- 2023Effective Prompt Extraction from Language Modelscited by 85
- 2024Long-Context Language Modeling with Parallel Context Encodingcited by 84
- 2024Can LLMs Separate Instructions From Data? And What Do We Even Mean By That?cited by 81
- 2024Transformers Can Do Arithmetic with the Right Embeddingscited by 78
- 2024Improved Few-Shot Jailbreaking Can Circumvent Aligned Language Models and Their Defensescited by 70
- 2023Large Language Models in Education: Vision and Opportunitiescited by 54
- 2023Can LLMs Follow Simple Rules?cited by 46
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Citing papers per year: 2024: 1; 2025: 24; 2026: 42.
67 papers.
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By area:
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- 2025Securing AI Agents with Information-Flow Controlcited by 121
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- 2025Effectively Controlling Reasoning Models through Thinking Interventioncited by 65
- 2025A Critical Evaluation of Defenses against Prompt Injection Attackscited by 36
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- 2025Defending Against Prompt Injection with DataFiltercited by 35
- 2025Control Illusion: The Failure of Instruction Hierarchies in Large Language Modelscited by 33
- 2025Defending Against Prompt Injection With a Few DefensiveTokenscited by 33
- 2025A Closer Look at System Prompt Robustnesscited by 32
- 2025PromptLocate: Localizing Prompt Injection Attackscited by 28
38 more
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- 2025Simple Prompt Injection Attacks Can Leak Personal Data Observed by LLM Agents During Task Executioncited by 26
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- 2026MUZZLE: Adaptive Agentic Red-Teaming of Web Agents Against Indirect Prompt Injection Attackscited by 21
- 2025PIShield: Detecting Prompt Injection Attacks via Intrinsic LLM Featurescited by 20
- 2025ObliInjection: Order-Oblivious Prompt Injection Attack to LLM Agents with Multi-source Datacited by 18
- 2026VIGIL: Defending LLM Agents Against Tool Stream Injection via Verify-Before-Commitcited by 17
- 2026Prompt Injection as Role Confusioncited by 17
- 2026A Framework for Formalizing LLM Agent Securitycited by 16
- 2026IH-Challenge: A Training Dataset to Improve Instruction Hierarchy on Frontier LLMscited by 15
- 2025Systems Security Foundations for Agentic Computingcited by 13
- 2026Defenses Against Prompt Attacks Learn Surface Heuristicscited by 11
- 2026The Granularity Mismatch in Agent Security: Argument-Level Provenance Solves Enforcement and Isolates the LLM Reasoning Bottleneckcited by 11
- 2025Meta SecAlign: A Secure Foundation LLM Against Prompt Injection Attackscited by 10
- 2026Optimizing Agent Planning for Security and Autonomycited by 10
- 2025Stronger Enforcement of Instruction Hierarchy via Augmented Intermediate Representationscited by 9
- 2026The Promptware Kill Chain: How Prompt Injections Gradually Evolved Into a Multistep Malware Delivery Mechanismcited by 9
- 2026Inherited Goal Drift: Contextual Pressure Can Undermine Agentic Goalscited by 9
- 2026The Autonomy Tax: Defense Training Breaks LLM Agentscited by 9
- 2026Security Considerations for Artificial Intelligence Agentscited by 8
- 2025AttnTrace: Contextual Attribution of Prompt Injection and Knowledge Corruptioncited by 7
- 2025The Illusion of Role Separation: Hidden Shortcuts in LLM Role Learning (and How to Fix Them)cited by 6
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- 2025Reasoning Up the Instruction Ladder for Controllable Language Modelscited by 5
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- 2026Multi-Stream LLMs: Unblocking Language Models with Parallel Streams of Thoughts, Inputs and Outputscited by 3
- 2026Untrusted Content Masking for Web Agents with Security Guaranteescited by 3
- 2026SecOPD: Mitigating Adaptive Prompt Injections by On-Policy Distillationcited by 3
- 2025Checkpoint-GCG: Auditing and Attacking Fine-Tuning-Based Prompt Injection Defensescited by 2
- 2025EAGER: Edge-Aligned LLM Defense for Robust, Efficient, and Accurate Cybersecurity Question Answeringcited by 2
- 2026Steering Instruction Hierarchies at Inference Timecited by 2
- 2026CoER: Defending against Adaptive Indirect Prompt Injection via Adversarial Co-Evolution and Refinementcited by 2
- 2026The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Makingcited by 1
- 2026Extended to Reality: Prompt Injection in 3D Environmentscited by 1
- 2026Are Dilemmas and Conflicts in LLM Alignment Solvable? A View from Priority Graphcited by 1
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- 2026LongPIBench: A Long-Context Benchmark for Prompt Injectioncited by 1
50 most cited of 67 All 67 (JSON)
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- 2026CounterSteer: Suppressing Indirect Prompt Injection with Activation Steering29 Sep 2026
- 2026Same Bytes, Different Authority: Reserved-Token Representations in Chat-Template Prompt Injection28 Sep 2026
- 2026CoER: Defending against Adaptive Indirect Prompt Injection via Adversarial Co-Evolution and Refinement7 Sep 2026
- 2026Seeing Through Conflicts: Improving Instruction Hierarchy Alignment in Vision-Language Models3 Sep 2026
- 2026LongPIBench: A Long-Context Benchmark for Prompt Injection28 Aug 2026
- 2026Semantic Overlays: Mitigating Prompt Injection with Annotations Beyond Tokens and Steering Vectors24 Aug 2026
- 2026SecOPD: Mitigating Adaptive Prompt Injections by On-Policy Distillation21 Aug 2026
- 2026How Language Models Choose Sides: Internal Representations of Instruction Hierarchy16 Aug 2026
- 2026PIPES: Securing Agent Perception with Provenance and Priors13 Aug 2026
- 2026Steering Instruction Hierarchies at Inference Time28 Jul 2026
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- 2026ResumeShield: Channel Separation and an Open Benchmark for Indirect Prompt Injection in AI Resume Screening24 Jul 2026
- 2026Untrusted Content Masking for Web Agents with Security Guarantees6 Jul 2026
- 2026MOSAIC: Knowledge-Guided CLI Command Composition Attack in LLM Coding Agents3 Jul 2026
- 2026IHDec: Divergence-Steered Contrastive Decoding for Securing Multi-Turn Instruction Hierarchies29 Jun 2026
- 2026Training LLMs to Enforce Multi-Level Instruction Hierarchies via Gravity-Weighted Direct Preference Optimization9 Jun 2026
- 2026LLM-Assisted Reranking to Operationalize Nuanced Objectives in Recommender Systems1 Jun 2026
- 2026Agent Security is a Systems Problem18 May 2026
- 2026Toward Securing AI Agents Like Operating Systems14 May 2026
- 2026Multi-Stream LLMs: Unblocking Language Models with Parallel Streams of Thoughts, Inputs and Outputs12 May 2026
- 2026Safety Context Injection: Inference-Time Safety Alignment via Static Filtering and Agentic Analysis12 May 2026
- 2026The Granularity Mismatch in Agent Security: Argument-Level Provenance Solves Enforcement and Isolates the LLM Reasoning Bottleneck11 May 2026
- 2026Many-Tier Instruction Hierarchy in LLM Agents10 Apr 2026
- 2026Hierarchical Alignment: Enforcing Hierarchical Instruction-Following in LLMs through Logical Consistency10 Apr 2026
- 2026A Framework for Formalizing LLM Agent Security19 Mar 2026
- 2026The Autonomy Tax: Defense Training Breaks LLM Agents19 Mar 2026
- 2026Are Dilemmas and Conflicts in LLM Alignment Solvable? A View from Priority Graph16 Mar 2026
- 2026Security Considerations for Artificial Intelligence Agents12 Mar 2026
- 2026The Attack and Defense Landscape of Agentic AI: A Comprehensive Survey11 Mar 2026
- 2026IH-Challenge: A Training Dataset to Improve Instruction Hierarchy on Frontier LLMs11 Mar 2026
- 2026Prompt Complexity Dilutes Structured Reasoning: A Follow-Up Study on the Car Wash Problem7 Mar 2026
- 2026Inherited Goal Drift: Contextual Pressure Can Undermine Agentic Goals3 Mar 2026
- 2026Prompt Injection as Role Confusion22 Feb 2026
- 2026Optimizing Agent Planning for Security and Autonomy11 Feb 2026
- 2026MUZZLE: Adaptive Agentic Red-Teaming of Web Agents Against Indirect Prompt Injection Attacks9 Feb 2026
- 2026Extended to Reality: Prompt Injection in 3D Environments6 Feb 2026
- 2026The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Making29 Jan 2026
- 2026The Promptware Kill Chain: How Prompt Injections Gradually Evolved Into a Multistep Malware Delivery Mechanism14 Jan 2026
- 2026Defenses Against Prompt Attacks Learn Surface Heuristics12 Jan 2026
- 2026VIGIL: Defending LLM Agents Against Tool Stream Injection via Verify-Before-Commit9 Jan 2026
- 2025ObliInjection: Order-Oblivious Prompt Injection Attack to LLM Agents with Multi-source Data10 Dec 2025
- 2025Context-Aware Hierarchical Learning: A Two-Step Paradigm towards Safer LLMs3 Dec 2025
- 2025Systems Security Foundations for Agentic Computing1 Dec 2025
- 2025EAGER: Edge-Aligned LLM Defense for Robust, Efficient, and Accurate Cybersecurity Question Answering24 Nov 2025
- 2025Reasoning Up the Instruction Ladder for Controllable Language Models30 Oct 2025
- 2025Defending Against Prompt Injection with DataFilter22 Oct 2025
- 2025PIShield: Detecting Prompt Injection Attacks via Intrinsic LLM Features15 Oct 2025
- 2025PromptLocate: Localizing Prompt Injection Attacks14 Oct 2025
50 newest of 67 All 67 (JSON)
- 2025Defeating Prompt Injections by Designcited by 297
- 2025WASP: Benchmarking Web Agent Security Against Prompt Injection Attackscited by 157
- 2024The Task Shield: Enforcing Task Alignment to Defend Against Indirect Prompt Injection in LLM Agentscited by 99
- 2025RL Is a Hammer and LLMs Are Nails: A Simple Reinforcement Learning Recipe for Strong Prompt Injectioncited by 36
- 2026The Attack and Defense Landscape of Agentic AI: A Comprehensive Surveycited by 28
- 2025Simple Prompt Injection Attacks Can Leak Personal Data Observed by LLM Agents During Task Executioncited by 26
- 2026MUZZLE: Adaptive Agentic Red-Teaming of Web Agents Against Indirect Prompt Injection Attackscited by 21
- 2025ObliInjection: Order-Oblivious Prompt Injection Attack to LLM Agents with Multi-source Datacited by 18
- 2026VIGIL: Defending LLM Agents Against Tool Stream Injection via Verify-Before-Commitcited by 17
- 2026A Framework for Formalizing LLM Agent Securitycited by 16
- 2025Systems Security Foundations for Agentic Computingcited by 13
- 2025Meta SecAlign: A Secure Foundation LLM Against Prompt Injection Attackscited by 10
12 most cited of 23 All 23 (JSON)
- 2026CounterSteer: Suppressing Indirect Prompt Injection with Activation Steering29 Sep 2026
- 2026Same Bytes, Different Authority: Reserved-Token Representations in Chat-Template Prompt Injection28 Sep 2026
- 2026CoER: Defending against Adaptive Indirect Prompt Injection via Adversarial Co-Evolution and Refinement7 Sep 2026
- 2026Untrusted Content Masking for Web Agents with Security Guarantees6 Jul 2026
- 2026MOSAIC: Knowledge-Guided CLI Command Composition Attack in LLM Coding Agents3 Jul 2026
- 2026Toward Securing AI Agents Like Operating Systems14 May 2026
- 2026Safety Context Injection: Inference-Time Safety Alignment via Static Filtering and Agentic Analysis12 May 2026
- 2026Many-Tier Instruction Hierarchy in LLM Agents10 Apr 2026
- 2026A Framework for Formalizing LLM Agent Security19 Mar 2026
- 2026The Autonomy Tax: Defense Training Breaks LLM Agents19 Mar 2026
- 2026The Attack and Defense Landscape of Agentic AI: A Comprehensive Survey11 Mar 2026
- 2026Inherited Goal Drift: Contextual Pressure Can Undermine Agentic Goals3 Mar 2026
12 newest of 23 All 23 (JSON)
- 2025A Critical Evaluation of Defenses against Prompt Injection Attackscited by 36
- 2025Defending Against Prompt Injection with DataFiltercited by 35
- 2025Defending Against Prompt Injection With a Few DefensiveTokenscited by 33
- 2025A Closer Look at System Prompt Robustnesscited by 32
- 2025PromptLocate: Localizing Prompt Injection Attackscited by 28
- 2025ASIDE: Architectural Separation of Instructions and Data in Language Modelscited by 24
- 2025PIShield: Detecting Prompt Injection Attacks via Intrinsic LLM Featurescited by 20
- 2026Prompt Injection as Role Confusioncited by 17
- 2026IH-Challenge: A Training Dataset to Improve Instruction Hierarchy on Frontier LLMscited by 15
- 2026Optimizing Agent Planning for Security and Autonomycited by 10
- 2025Stronger Enforcement of Instruction Hierarchy via Augmented Intermediate Representationscited by 9
- 2026The Promptware Kill Chain: How Prompt Injections Gradually Evolved Into a Multistep Malware Delivery Mechanismcited by 9
12 most cited of 16 All 16 (JSON)
- 2026LongPIBench: A Long-Context Benchmark for Prompt Injection28 Aug 2026
- 2026Semantic Overlays: Mitigating Prompt Injection with Annotations Beyond Tokens and Steering Vectors24 Aug 2026
- 2026SecOPD: Mitigating Adaptive Prompt Injections by On-Policy Distillation21 Aug 2026
- 2026ResumeShield: Channel Separation and an Open Benchmark for Indirect Prompt Injection in AI Resume Screening24 Jul 2026
- 2026IH-Challenge: A Training Dataset to Improve Instruction Hierarchy on Frontier LLMs11 Mar 2026
- 2026Prompt Injection as Role Confusion22 Feb 2026
- 2026Optimizing Agent Planning for Security and Autonomy11 Feb 2026
- 2026The Promptware Kill Chain: How Prompt Injections Gradually Evolved Into a Multistep Malware Delivery Mechanism14 Jan 2026
- 2025Defending Against Prompt Injection with DataFilter22 Oct 2025
- 2025PIShield: Detecting Prompt Injection Attacks via Intrinsic LLM Features15 Oct 2025
- 2025PromptLocate: Localizing Prompt Injection Attacks14 Oct 2025
- 2025Defending Against Prompt Injection With a Few DefensiveTokens10 Jul 2025
12 newest of 16 All 16 (JSON)
- 2025Effectively Controlling Reasoning Models through Thinking Interventioncited by 65
- 2026The Granularity Mismatch in Agent Security: Argument-Level Provenance Solves Enforcement and Isolates the LLM Reasoning Bottleneckcited by 11
- 2025Reasoning Up the Instruction Ladder for Controllable Language Modelscited by 5
- 2026Multi-Stream LLMs: Unblocking Language Models with Parallel Streams of Thoughts, Inputs and Outputscited by 3
- 2026Multi-Stream LLMs: Unblocking Language Models with Parallel Streams of Thoughts, Inputs and Outputs12 May 2026
- 2026The Granularity Mismatch in Agent Security: Argument-Level Provenance Solves Enforcement and Isolates the LLM Reasoning Bottleneck11 May 2026
- 2025Reasoning Up the Instruction Ladder for Controllable Language Models30 Oct 2025
- 2025Effectively Controlling Reasoning Models through Thinking Intervention31 Mar 2025
- 2025EAGER: Edge-Aligned LLM Defense for Robust, Efficient, and Accurate Cybersecurity Question Answeringcited by 2
- 2026Are Dilemmas and Conflicts in LLM Alignment Solvable? A View from Priority Graphcited by 1
- 2026Training LLMs to Enforce Multi-Level Instruction Hierarchies via Gravity-Weighted Direct Preference Optimizationcited by 0
- 2026Training LLMs to Enforce Multi-Level Instruction Hierarchies via Gravity-Weighted Direct Preference Optimization9 Jun 2026
- 2026Are Dilemmas and Conflicts in LLM Alignment Solvable? A View from Priority Graph16 Mar 2026
- 2025EAGER: Edge-Aligned LLM Defense for Robust, Efficient, and Accurate Cybersecurity Question Answering24 Nov 2025
- 2025Securing AI Agents with Information-Flow Controlcited by 121
- 2025Control Illusion: The Failure of Instruction Hierarchies in Large Language Modelscited by 33
- 2026Defenses Against Prompt Attacks Learn Surface Heuristicscited by 11
- 2026Security Considerations for Artificial Intelligence Agentscited by 8
- 2025The Illusion of Role Separation: Hidden Shortcuts in LLM Role Learning (and How to Fix Them)cited by 6
- 2026Agent Security is a Systems Problemcited by 5
- 2026Steering Instruction Hierarchies at Inference Timecited by 2
- 2026The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Makingcited by 1
- 2026Hierarchical Alignment: Enforcing Hierarchical Instruction-Following in LLMs through Logical Consistencycited by 1
- 2025Context-Aware Hierarchical Learning: A Two-Step Paradigm towards Safer LLMscited by 0
- 2026Prompt Complexity Dilutes Structured Reasoning: A Follow-Up Study on the Car Wash Problemcited by 0
- 2026LLM-Assisted Reranking to Operationalize Nuanced Objectives in Recommender Systemscited by 0
12 most cited of 17 All 17 (JSON)
- 2026Can LLMs Separate Pasted Artifacts from User Speech? Absorption at Unmarked Prompt Seams3 Oct 2026
- 2026How Language Models Choose Sides: Internal Representations of Instruction Hierarchy16 Aug 2026
- 2026PIPES: Securing Agent Perception with Provenance and Priors13 Aug 2026
- 2026Steering Instruction Hierarchies at Inference Time28 Jul 2026
- 2026Language Shapes Instruction Hierarchy Compliance in Multilingual LLMs26 Jul 2026
- 2026IHDec: Divergence-Steered Contrastive Decoding for Securing Multi-Turn Instruction Hierarchies29 Jun 2026
- 2026LLM-Assisted Reranking to Operationalize Nuanced Objectives in Recommender Systems1 Jun 2026
- 2026Agent Security is a Systems Problem18 May 2026
- 2026Hierarchical Alignment: Enforcing Hierarchical Instruction-Following in LLMs through Logical Consistency10 Apr 2026
- 2026Security Considerations for Artificial Intelligence Agents12 Mar 2026
- 2026Prompt Complexity Dilutes Structured Reasoning: A Follow-Up Study on the Car Wash Problem7 Mar 2026
- 2026The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Making29 Jan 2026
12 newest of 17 All 17 (JSON)
Similar, not cited
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- 2023Evaluating the Instruction-Following Robustness of Large Language Models to Prompt Injection
- 2025Robustness via Referencing: Defending against Prompt Injection Attacks by Referencing the Executed Instruction
- 2025Sysformer: Safeguarding Frozen Large Language Models with Adaptive System Prompts
- 2025Prompt Injection as an Emerging Threat: Evaluating the Resilience of Large Language Models
- 2026Know Thy Enemy: Securing LLMs Against Prompt Injection via Diverse Data Synthesis and Instruction-Level Chain-of-Thought Learning
- 2026Reflex-Guard: A Low-Latency Guardrail for LLM Prompt Safety Using Dense Semantic Embeddings
- 2025Defending against Indirect Prompt Injection by Instruction Detection
- 2024On Prompt-Driven Safeguarding for Large Language Models