A Survey on Heterogeneous Graph Embedding: Methods, Techniques, Applications and Sources
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Abstract (arXiv)
Heterogeneous graphs (HGs) also known as heterogeneous information networks have become ubiquitous in real-world scenarios; therefore, HG embedding, which aims to learn representations in a lower-dimension space while preserving the heterogeneous structures and semantics for downstream tasks (e.g., node/graph classification, node clustering, link prediction), has drawn considerable attentions in recent years. In this survey, we perform a comprehensive review of the recent development on HG embedding methods and techniques. We first introduce the basic concepts of HG and discuss the unique challenges brought by the heterogeneity for HG embedding in comparison with homogeneous graph representation learning; and then we systemically survey and categorize the state-of-the-art HG embedding methods based on the information they used in the learning process to address the challenges posed by the HG heterogeneity. In particular, for each representative HG embedding method, we provide detailed introduction and further analyze its pros and cons; meanwhile, we also explore the transformativeness and applicability of different types of HG embedding methods in the real-world industrial environments for the first time. In addition, we further present several widely deployed systems that have demonstrated the success of HG embedding techniques in resolving real-world application problems with broader impacts. To facilitate future research and applications in this area, we also summarize the open-source code, existing graph learning platforms and benchmark datasets. Finally, we explore the additional issues and challenges of HG embedding and forecast the future research directions in this field.
Key facts. Cited by 126 papers in the map (data through 7 Oct 2026). First posted on arXiv 30 Nov 2020.
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Citing papers per year: 2021: 6; 2022: 19; 2023: 32; 2024: 32; 2025: 22; 2026: 15.
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- 2021Beyond Low-frequency Information in Graph Convolutional Networkscited by 361
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
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- 2022A Survey of Graph Neural Networks for Social Recommender Systemscited by 65
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- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networkscited by 32
- 2024Graph Transformers: A Surveycited by 32
- 2022Parallel and Distributed Graph Neural Networks: An In-Depth Concurrency Analysiscited by 29
- 2023Class-Imbalanced Learning on Graphs: A Surveycited by 24
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- 2023HAGNN: Hybrid Aggregation for Heterogeneous Graph Neural Networkscited by 4
- 2023Hetero2Net: Heterophily-aware Representation Learning on Heterogenerous Graphscited by 4
- 2024Temporal Link Prediction Using Graph Embedding Dynamicscited by 4
- 2024Machine Learning on Dynamic Graphs: A Survey on Applicationscited by 4
50 most cited of 126 All 126 (JSON)
- 2026Dynamic Heterogeneous Graph Representation Learning: A Survey4 Sep 2026
- 2026Remedying Coarsening-Based GNN Training under Heterophily via Adaptive Complementary Enhancement24 Jul 2026
- 2026Spatial Support Matters: Geometry-Aware Graph Fusion for Rainfall Field Reconstruction2 Jul 2026
- 2026HiSE: A Lightweight Hierarchical Semantic Explainer for Heterogeneous Graph Neural Networks2 Jun 2026
- 2026Attention-based graph neural networks: a survey9 May 2026
- 2026HeterSEED: Semantics-Structure Decoupling for Heterogeneous Graph Learning under Heterophily6 May 2026
- 2026Triple Spectral Fusion for Sensor-based Human Activity Recognition4 May 2026
- 2026TypeBandit: Type-Level Context Allocation and Reweighting for Effective Attribute Completion in Heterogeneous Graph Neural Networks30 Apr 2026
- 2026Transferable FB-GNN-MBE Framework for Potential Energy Surfaces: Data-Adaptive Transfer Learning in Deep Learned Many-Body Expansion Theory10 Apr 2026
- 2026UniHetCO: A Unified Heterogeneous Representation for Multi-Problem Learning in Unsupervised Neural Combinatorial Optimization12 Mar 2026
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databases9 Mar 2026
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- 2025Grounded by Experience: Generative Healthcare Prediction Augmented with Hierarchical Agentic Retrieval17 Nov 2025
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- 2025Are Heterogeneous Graph Neural Networks Truly Effective for Node Classification? A Causal Perspective7 Oct 2025
- 2025Neighborhood-Adaptive Generalized Linear Graph Embedding with Latent Pattern Mining7 Oct 2025
- 2025Exploring a Graph-based Approach to Offline Reinforcement Learning for Sepsis Treatment3 Sep 2025
- 2025Metapath-based Hyperbolic Contrastive Learning for Heterogeneous Graph Embedding20 Jun 2025
- 2025Heterogeneous Temporal Hypergraph Neural Network18 Jun 2025
- 2025H2GFM: Towards unifying Homogeneity and Heterogeneity on Text-Attributed Graphs10 Jun 2025
- 2025Masked Language Models are Good Heterogeneous Graph Generalizers6 Jun 2025
- 2025HGOT: Self-supervised Heterogeneous Graph Neural Network with Optimal Transport3 Jun 2025
- 2025Multi-Granular Attention based Heterogeneous Hypergraph Neural Network7 May 2025
- 2025Out-of-Distribution Detection in Heterogeneous Graphs via Energy Propagation29 Apr 2025
- 2025OmniSage: Large Scale, Multi-Entity Heterogeneous Graph Representation Learning22 Apr 2025
- 2025Academic Network Representation via Prediction-Sampling Incorporated Tensor Factorization11 Apr 2025
- 2025From Text to Talent: A Pipeline for Extracting Insights from Candidate Profiles21 Mar 2025
- 2025Heterogeneous Graph Structure Learning through the Lens of Data-generating Processes11 Mar 2025
- 2025LLM-Empowered Class Imbalanced Graph Prompt Learning for Online Drug Trafficking Detection28 Feb 2025
- 2025Multiview graph dual-attention deep learning and contrastive learning for multi-criteria recommender systems26 Feb 2025
- 2025AutoG: Towards automatic graph construction from tabular data25 Jan 2025
- 2024Extending Graph Condensation to Multi-Label Datasets: A Benchmark Study23 Dec 2024
- 2024GraphAgent: Agentic Graph Language Assistant22 Dec 2024
- 2024Revisiting Self-Supervised Heterogeneous Graph Learning from Spectral Clustering Perspective1 Dec 2024
- 2024Towards Data-centric Machine Learning on Directed Graphs: a Survey28 Nov 2024
- 2024HeteroSample: Meta-path Guided Sampling for Heterogeneous Graph Representation Learning11 Nov 2024
- 2024Explainable Spatio-Temporal GCNNs for Irregular Multivariate Time Series: Architecture and Application to ICU Patient Data1 Nov 2024
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- 2024Heterogeneous Graph Reinforcement Learning for Dependency-aware Multi-task Allocation in Spatial Crowdsourcing20 Oct 2024
- 2024TIGER: Temporally Improved Graph Entity Linker11 Oct 2024
- 2024HeGraphAdapter: Tuning Multi-Modal Vision-Language Models with Heterogeneous Graph Adapter10 Oct 2024
- 2024A Survey on Signed Graph Embedding: Methods and Applications5 Sep 2024
- 2024CARE: A Clue-guided Assistant for CSRs to Read User Manuals7 Aug 2024
- 2024Characterizing and Understanding HGNN Training on GPUs16 Jul 2024
50 newest of 126 All 126 (JSON)
- 2021Beyond Low-frequency Information in Graph Convolutional Networkscited by 361
- 2023A Comprehensive Survey on Deep Graph Representation Learningcited by 72
- 2022Simple and Efficient Heterogeneous Graph Neural Networkcited by 71
- 2022A Survey of Graph Neural Networks for Social Recommender Systemscited by 65
- 2022Heterogeneous Graph Masked Autoencoderscited by 47
- 2024HiGPT: Heterogeneous Graph Language Modelcited by 44
- 2021Reinforced Neighborhood Selection Guided Multi-Relational Graph Neural Networkscited by 38
- 2023HINormer: Representation Learning On Heterogeneous Information Networks with Graph Transformercited by 35
- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networkscited by 32
- 2024Graph Transformers: A Surveycited by 32
- 2022Parallel and Distributed Graph Neural Networks: An In-Depth Concurrency Analysiscited by 29
- 2023Class-Imbalanced Learning on Graphs: A Surveycited by 24
12 most cited of 123 All 123 (JSON)
- 2026Dynamic Heterogeneous Graph Representation Learning: A Survey4 Sep 2026
- 2026Remedying Coarsening-Based GNN Training under Heterophily via Adaptive Complementary Enhancement24 Jul 2026
- 2026Spatial Support Matters: Geometry-Aware Graph Fusion for Rainfall Field Reconstruction2 Jul 2026
- 2026HiSE: A Lightweight Hierarchical Semantic Explainer for Heterogeneous Graph Neural Networks2 Jun 2026
- 2026Attention-based graph neural networks: a survey9 May 2026
- 2026HeterSEED: Semantics-Structure Decoupling for Heterogeneous Graph Learning under Heterophily6 May 2026
- 2026Triple Spectral Fusion for Sensor-based Human Activity Recognition4 May 2026
- 2026TypeBandit: Type-Level Context Allocation and Reweighting for Effective Attribute Completion in Heterogeneous Graph Neural Networks30 Apr 2026
- 2026Transferable FB-GNN-MBE Framework for Potential Energy Surfaces: Data-Adaptive Transfer Learning in Deep Learned Many-Body Expansion Theory10 Apr 2026
- 2026UniHetCO: A Unified Heterogeneous Representation for Multi-Problem Learning in Unsupervised Neural Combinatorial Optimization12 Mar 2026
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databases9 Mar 2026
- 2026Incremental Graph Construction Enables Robust Spectral Clustering of Texts3 Mar 2026
12 newest of 123 All 123 (JSON)