Class-Imbalanced Learning on Graphs: A Survey
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Abstract (arXiv)
The rapid advancement in data-driven research has increased the demand for effective graph data analysis. However, real-world data often exhibits class imbalance, leading to poor performance of machine learning models. To overcome this challenge, class-imbalanced learning on graphs (CILG) has emerged as a promising solution that combines the strengths of graph representation learning and class-imbalanced learning. In recent years, significant progress has been made in CILG. Anticipating that such a trend will continue, this survey aims to offer a comprehensive understanding of the current state-of-the-art in CILG and provide insights for future research directions. Concerning the former, we introduce the first taxonomy of existing work and its connection to existing imbalanced learning literature. Concerning the latter, we critically analyze recent work in CILG and discuss urgent lines of inquiry within the topic. Moreover, we provide a continuously maintained reading list of papers and code at https://github.com/yihongma/CILG-Papers.
Key facts. Cited by 24 papers in the map (data through 7 Oct 2026). Builds on 51 of its 115 references that are in the map. First posted on arXiv 9 Apr 2023.
Builds on
51 of 115 references.
References · 51
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2018Representation Learning with Contrastive Predictive Codingcited by 7,662
- 2017mixup: Beyond Empirical Risk Minimizationcited by 5,155
- 2017On Calibration of Modern Neural Networkscited by 4,860
- 2017Neural Message Passing for Quantum Chemistrycited by 3,460
- 2019A Comprehensive Survey on Graph Neural Networkscited by 2,906
- 2014Conditional Generative Adversarial Netscited by 2,152
- 2016node2vec: Scalable Feature Learning for Networkscited by 1,913
- 2014DeepWalk: Online Learning of Social Representationscited by 1,543
- 2019Class-Balanced Loss Based on Effective Number of Samplescited by 1,239
- 2018Pitfalls of Graph Neural Network Evaluationcited by 994
- 2019Learning Imbalanced Datasets with Label-Distribution-Aware Margin Losscited by 987
38 more
- 2016Revisiting Semi-Supervised Learning with Graph Embeddingscited by 970
- 2017Focal Loss for Dense Object Detectioncited by 749
- 2019GraphSAINT: Graph Sampling Based Inductive Learning Methodcited by 618
- 2020A Survey on Contrastive Self-supervised Learningcited by 553
- 2019Multi-scale Attributed Node Embeddingcited by 543
- 2018Hypergraph Neural Networkscited by 482
- 2021Deep Long-Tailed Learning: A Surveycited by 416
- 2018Deep Learning on Graphs: A Surveycited by 393
- 2021Graph Self-Supervised Learning: A Surveycited by 289
- 2020Wiki-CS: A Wikipedia-Based Benchmark for Graph Neural Networkscited by 253
- 2020Rethinking the Value of Labels for Improving Class-Imbalanced Learningcited by 216
- 2022Graph Neural Networks for Graphs with Heterophily: A Surveycited by 175
- 2021Delving into Deep Imbalanced Regressioncited by 157
- 2021GraphSMOTE: Imbalanced Node Classification on Graphs with Graph Neural Networkscited by 147
- 2017A Survey on Network Embeddingcited by 142
- 2020A Survey on Heterogeneous Graph Embedding: Methods, Techniques, Applications and Sourcescited by 126
- 2019Generative Adversarial Minority Oversamplingcited by 72
- 2018Imbalanced Deep Learning by Minority Class Incremental Rectificationcited by 65
- 2021Topology-Imbalance Learning for Semi-Supervised Node Classificationcited by 56
- 2021ImGAGN:Imbalanced Network Embedding via Generative Adversarial Graph Networkscited by 51
- 2022Graph-based Molecular Representation Learningcited by 51
- 2021Self-Damaging Contrastive Learningcited by 48
- 2022Heterogeneous Graph Masked Autoencoderscited by 47
- 2022TAM: Topology-Aware Margin Loss for Class-Imbalanced Node Classificationcited by 41
- 2022Position-aware Structure Learning for Graph Topology-imbalance by Relieving Under-reaching and Over-squashingcited by 31
- 2021Improving Contrastive Learning on Imbalanced Seed Data via Open-World Samplingcited by 30
- 2022LTE4G: Long-Tail Experts for Graph Neural Networkscited by 30
- 2021Imbalanced Graph Classification via Graph-of-Graph Neural Networkscited by 27
- 2020Network Embedding with Completely-imbalanced Labelscited by 21
- 2022ImGCL: Revisiting Graph Contrastive Learning on Imbalanced Node Classificationcited by 21
- 2022A Survey of Methods for Addressing Class Imbalance in Deep-Learning Based Natural Language Processingcited by 20
- 2022Graph Neural Network with Curriculum Learning for Imbalanced Node Classificationcited by 19
- 2023GraphSR: A Data Augmentation Algorithm for Imbalanced Node Classificationcited by 19
- 2022Recipe2Vec: Multi-modal Recipe Representation Learning with Graph Neural Networkscited by 12
- 2022TopoImb: Toward Topology-level Imbalance in Learning from Graphscited by 12
- 2022Model Optimization in Imbalanced Regressioncited by 7
- 2022Diving into Unified Data-Model Sparsity for Class-Imbalanced Graph Representation Learningcited by 4
- 2020Learning Attribute-Structure Co-Evolutions in Dynamic Graphscited by 3
50 most cited of 51 All 51 (JSON)
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Citing papers per year: 2023: 5; 2024: 7; 2025: 7; 2026: 5.
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- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networkscited by 32
- 2023A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applicationscited by 22
- 2023A Survey of Imbalanced Learning on Graphs: Problems, Techniques, and Future Directionscited by 15
- 2023BeMap: Balanced Message Passing for Fair Graph Neural Networkcited by 11
- 2024WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarkingcited by 5
- 2024Edge Classification on Graphs: New Directions in Topological Imbalancecited by 4
- 2024KnowGraph: Knowledge-Enabled Anomaly Detection via Logical Reasoning on Graph Datacited by 4
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuningcited by 2
- 2024Class-Balanced and Reinforced Active Learning on Graphscited by 1
- 2024Automated Loss function Search for Class-imbalanced Node Classificationcited by 1
- 2024SaVe-TAG: LLM-based Interpolation for Long-Tailed Text-Attributed Graphscited by 1
- 2025GraphFedMIG: Tackling Class Imbalance in Federated Graph Learning via Mutual Information-Guided Generationcited by 1
12 more
- 2025SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regressioncited by 1
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databasescited by 1
- 2023VIGraph: Generative Self-supervised Learning for Class-Imbalanced Node Classificationcited by 0
- 2025Graph Learning for Bidirectional Disease Contact Tracing on Real Human Mobility Datacited by 0
- 2025UPL: Uncertainty-aware Pseudo-labeling for Imbalance Transductive Node Classificationcited by 0
- 2025When Noisy Labels Meet Class Imbalance on Graphs: A Graph Augmentation Method with LLM and Pseudo Labelcited by 0
- 2025Scaffold-Aware Generative Augmentation and Reranking for Enhanced Virtual Screeningcited by 0
- 2025Boosting Predictive Performance on Tabular Data through Data Augmentation with Latent-Space Flow-Based Diffusioncited by 0
- 2026H3: A Healthcare Three-Hop Index for Physician Referral Network Predictioncited by 0
- 2026On the Safety of Graph Representation Learningcited by 0
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessmentcited by 0
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classificationcited by 0
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classification25 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2026On the Safety of Graph Representation Learning7 May 2026
- 2026H3: A Healthcare Three-Hop Index for Physician Referral Network Prediction4 May 2026
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databases9 Mar 2026
- 2025Boosting Predictive Performance on Tabular Data through Data Augmentation with Latent-Space Flow-Based Diffusion20 Nov 2025
- 2025SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regression6 Nov 2025
- 2025Scaffold-Aware Generative Augmentation and Reranking for Enhanced Virtual Screening18 Oct 2025
- 2025GraphFedMIG: Tackling Class Imbalance in Federated Graph Learning via Mutual Information-Guided Generation14 Aug 2025
- 2025When Noisy Labels Meet Class Imbalance on Graphs: A Graph Augmentation Method with LLM and Pseudo Label24 Jul 2025
- 2025UPL: Uncertainty-aware Pseudo-labeling for Imbalance Transductive Node Classification2 Feb 2025
- 2025Graph Learning for Bidirectional Disease Contact Tracing on Real Human Mobility Data30 Jan 2025
12 more
- 2024WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking14 Nov 2024
- 2024SaVe-TAG: LLM-based Interpolation for Long-Tailed Text-Attributed Graphs22 Oct 2024
- 2024KnowGraph: Knowledge-Enabled Anomaly Detection via Logical Reasoning on Graph Data10 Oct 2024
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuning18 Jul 2024
- 2024Edge Classification on Graphs: New Directions in Topological Imbalance17 Jun 2024
- 2024Automated Loss function Search for Class-imbalanced Node Classification23 May 2024
- 2024Class-Balanced and Reinforced Active Learning on Graphs15 Feb 2024
- 2023VIGraph: Generative Self-supervised Learning for Class-Imbalanced Node Classification2 Nov 2023
- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networks23 Oct 2023
- 2023A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applications31 Aug 2023
- 2023A Survey of Imbalanced Learning on Graphs: Problems, Techniques, and Future Directions26 Aug 2023
- 2023BeMap: Balanced Message Passing for Fair Graph Neural Network7 Jun 2023
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuningcited by 2
- 2024Krait: A Backdoor Attack Against Graph Prompt Tuning18 Jul 2024
- 2023HetGPT: Harnessing the Power of Prompt Tuning in Pre-Trained Heterogeneous Graph Neural Networkscited by 32
- 2023A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applicationscited by 22
- 2023A Survey of Imbalanced Learning on Graphs: Problems, Techniques, and Future Directionscited by 15
- 2023BeMap: Balanced Message Passing for Fair Graph Neural Networkcited by 11
- 2024WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarkingcited by 5
- 2024Edge Classification on Graphs: New Directions in Topological Imbalancecited by 4
- 2024Class-Balanced and Reinforced Active Learning on Graphscited by 1
- 2024Automated Loss function Search for Class-imbalanced Node Classificationcited by 1
- 2024SaVe-TAG: LLM-based Interpolation for Long-Tailed Text-Attributed Graphscited by 1
- 2025GraphFedMIG: Tackling Class Imbalance in Federated Graph Learning via Mutual Information-Guided Generationcited by 1
- 2025SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regressioncited by 1
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databasescited by 1
12 most cited of 21 All 21 (JSON)
- 2026MDTE: Minority-Aware Diffusion over Temporal Edge Events for Imbalanced Node Classification25 Aug 2026
- 2026NodeImport: Imbalanced Node Classification with Node Importance Assessment15 Jul 2026
- 2026On the Safety of Graph Representation Learning7 May 2026
- 2026H3: A Healthcare Three-Hop Index for Physician Referral Network Prediction4 May 2026
- 2026Rel-MOSS: Towards Imbalanced Relational Deep Learning on Relational Databases9 Mar 2026
- 2025SPECTRA: Spectral Domain-Aware Graph Generation for Imbalanced Molecular Property Regression6 Nov 2025
- 2025Scaffold-Aware Generative Augmentation and Reranking for Enhanced Virtual Screening18 Oct 2025
- 2025GraphFedMIG: Tackling Class Imbalance in Federated Graph Learning via Mutual Information-Guided Generation14 Aug 2025
- 2025When Noisy Labels Meet Class Imbalance on Graphs: A Graph Augmentation Method with LLM and Pseudo Label24 Jul 2025
- 2025UPL: Uncertainty-aware Pseudo-labeling for Imbalance Transductive Node Classification2 Feb 2025
- 2025Graph Learning for Bidirectional Disease Contact Tracing on Real Human Mobility Data30 Jan 2025
- 2024WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking14 Nov 2024
12 newest of 21 All 21 (JSON)