GFlowNets for AI-Driven Scientific Discovery
Not on the map. Why?
Abstract (arXiv)
Tackling the most pressing problems for humanity, such as the climate crisis and the threat of global pandemics, requires accelerating the pace of scientific discovery. While science has traditionally relied on trial and error and even serendipity to a large extent, the last few decades have seen a surge of data-driven scientific discoveries. However, in order to truly leverage large-scale data sets and high-throughput experimental setups, machine learning methods will need to be further improved and better integrated in the scientific discovery pipeline. A key challenge for current machine learning methods in this context is the efficient exploration of very large search spaces, which requires techniques for estimating reducible (epistemic) uncertainty and generating sets of diverse and informative experiments to perform. This motivated a new probabilistic machine learning framework called GFlowNets, which can be applied in the modeling, hypotheses generation and experimental design stages of the experimental science loop. GFlowNets learn to sample from a distribution given indirectly by a reward function corresponding to an unnormalized probability, which enables sampling diverse, high-reward candidates. GFlowNets can also be used to form efficient and amortized Bayesian posterior estimators for causal models conditioned on the already acquired experimental data. Having such posterior models can then provide estimators of epistemic uncertainty and information gain that can drive an experimental design policy. Altogether, here we will argue that GFlowNets can become a valuable tool for AI-driven scientific discovery, especially in scenarios of very large candidate spaces where we have access to cheap but inaccurate measurements or to expensive but accurate measurements. This is a common setting in the context of drug and material discovery, which we use as examples throughout the paper.
Key facts. Cited by 63 papers in the map (data through 7 Oct 2026). Builds on 54 of its 133 references that are in the map. First posted on arXiv 1 Feb 2023.
Builds on
54 of 133 references.
References · 54
- 2016Variational Inference: A Review for Statisticianscited by 1,466
- 2018DAGs with NO TEARS: Continuous Optimization for Structure Learningcited by 745
- 2018Conditional Neural Processescited by 421
- 2021Flow Network based Generative Models for Non-Iterative Diverse Candidate Generationcited by 384
- 2021GFlowNet Foundationscited by 286
- 2022Trajectory balance: Improved credit assignment in GFlowNetscited by 244
- 2020Differentiable Causal Discovery from Interventional Datacited by 218
- 2017Max-value Entropy Search for Efficient Bayesian Optimizationcited by 202
- 2014Predictive Entropy Search for Efficient Global Optimization of Black-box Functionscited by 201
- 2013Learning Bayesian Networks: The Combination of Knowledge and Statistical Datacited by 185
- 2022Biological Sequence Design with GFlowNetscited by 172
- 2022Bayesian Structure Learning with Generative Flow Networkscited by 153
38 more
- 20213D Infomax improves GNNs for Molecular Property Predictioncited by 146
- 2022Learning GFlowNets from partial episodes for improved convergence and stabilitycited by 129
- 2021MARS: Markov Molecular Sampling for Multi-objective Drug Discoverycited by 125
- 2017Multi-fidelity Bayesian Optimisation with Continuous Approximationscited by 120
- 2019Variational Bayesian Optimal Experimental Designcited by 116
- 2019Learning Neural Causal Models from Unknown Interventionscited by 113
- 2021DiBS: Differentiable Bayesian Structure Learningcited by 105
- 2015Batch Bayesian Optimization via Local Penalizationcited by 103
- 2021Deep Adaptive Design: Amortizing Sequential Bayesian Experimental Designcited by 103
- 2022GFlowNets and variational inferencecited by 103
- 2022Multi-Objective GFlowNetscited by 100
- 2023A theory of continuous generative flow networkscited by 98
- 2022Amortized Inference for Causal Structure Learningcited by 89
- 2021Multi-Objective Bayesian Optimization over High-Dimensional Search Spacescited by 87
- 2017On Nesting Monte Carlo Estimatorscited by 82
- 2020Max-value Entropy Search for Multi-Objective Bayesian Optimization with Constraintscited by 81
- 2021BCD Nets: Scalable Variational Approaches for Bayesian Causal Discoverycited by 68
- 2021Implicit Deep Adaptive Design: Policy-Based Experimental Design without Likelihoodscited by 61
- 2019A Unified Stochastic Gradient Approach to Designing Bayesian-Optimal Experimentscited by 58
- 2020Bayesian Experimental Design for Implicit Models by Mutual Information Neural Estimationcited by 56
- 2020BOSS: Bayesian Optimization over String Spacescited by 54
- 2019ABCD-Strategy: Budgeted Experimental Design for Targeted Causal Structure Discoverycited by 52
- 2022Interventions, Where and How? Experimental Design for Causal Models at Scalecited by 49
- 2021GIBBON: General-purpose Information-Based Bayesian OptimisatioNcited by 47
- 2022Optimizing Sequential Experimental Design with Deep Reinforcement Learningcited by 45
- 2020Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structurescited by 44
- 2021Variational Causal Networks: Approximate Bayesian Inference over Causal Structurescited by 43
- 2021Learning Neural Causal Models with Active Interventionscited by 40
- 2020Scalable Thompson Sampling using Sparse Gaussian Process Modelscited by 39
- 2018Efficient Bayesian Experimental Design for Implicit Modelscited by 34
- 2022Active Bayesian Causal Inferencecited by 34
- 2020Towards Scalable Bayesian Learning of Causal DAGscited by 33
- 2013Data Analysis with Bayesian Networks: A Bootstrap Approachcited by 31
- 2022Bayesian learning of Causal Structure and Mechanisms with GFlowNets and Variational Bayescited by 30
- 2013Theory Refinement on Bayesian Networkscited by 28
- 2022GFlowOut: Dropout with Generative Flow Networkscited by 22
- 2015Bayesian Optimization for Synthetic Gene Designcited by 21
- 2023NODAGS-Flow: Nonlinear Cyclic Causal Structure Learningcited by 20
50 most cited of 54 All 54 (JSON)
Built on by
Citing papers per year: 2023: 15; 2024: 20; 2025: 21; 2026: 7.
63 papers.
Sort:
By area:
- 2023Amortizing intractable inference in large language modelscited by 94
- 2023Diffusion Generative Flow Samplers: Improving learning signals through partial trajectory optimizationcited by 57
- 2023Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Networkcited by 50
- 2023Local Search GFlowNetscited by 45
- 2023Large Language Models are Zero Shot Hypothesis Proposerscited by 45
- 2023Let the Flows Tell: Solving Graph Combinatorial Optimization Problems with GFlowNetscited by 40
- 2024Discrete Probabilistic Inference as Control in Multi-path Environmentscited by 40
- 2025FlowRL: Matching Reward Distributions for LLM Reasoningcited by 38
- 2024Genetic-guided GFlowNets for Sample Efficient Molecular Optimizationcited by 36
- 2024Diffusion Models as Constrained Samplers for Optimization with Unknown Constraintscited by 33
- 2024Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluationcited by 33
- 2024Efficient Diversity-Preserving Diffusion Alignment via Gradient-Informed GFlowNetscited by 30
38 more
- 2023Crystal-GFN: sampling crystals with desirable properties and constraintscited by 29
- 2024Improving GFlowNets for Text-to-Image Diffusion Alignmentcited by 27
- 2023Learning to Scale Logits for Temperature-Conditional GFlowNetscited by 26
- 2024Adaptive teachers for amortized samplerscited by 23
- 2023Pre-Training and Fine-Tuning Generative Flow Networkscited by 16
- 2023Multi-Fidelity Active Learning with GFlowNetscited by 15
- 2024Improved Off-policy Reinforcement Learning in Biological Sequence Designcited by 13
- 2023Generative Flow Networks: a Markov Chain Perspectivecited by 12
- 2024RetroGFN: Diverse and Feasible Retrosynthesis using GFlowNetscited by 10
- 2025LLMs for Bayesian Optimization in Scientific Domains: Are We There Yet?cited by 10
- 2024Beyond Squared Error: Exploring Loss Design for Enhanced Training of Generative Flow Networkscited by 9
- 2024Looking Backward: Retrospective Backward Synthesis for Goal-Conditioned GFlowNetscited by 8
- 2024Improving GFlowNets with Monte Carlo Tree Searchcited by 8
- 2024Towards Building Specialized Generalist AI with System 1 and System 2 Fusioncited by 8
- 2025Artificial Intelligence and Generative Models for Materials Discovery -- A Reviewcited by 8
- 2023GRAPES: Learning to Sample Graphs for Scalable Graph Neural Networkscited by 7
- 2025Virtual Cells: Predict, Explain, Discovercited by 7
- 2025Advancing the Scientific Method with Large Language Models: From Hypothesis to Discoverycited by 7
- 2024On Divergence Measures for Training GFlowNetscited by 6
- 2025Compositional Flows for 3D Molecule and Synthesis Pathway Co-designcited by 6
- 2024Towards DNA-Encoded Library Generation with GFlowNetscited by 5
- 2024Random Policy Evaluation Uncovers Policies of Generative Flow Networkscited by 5
- 2025Scalable and Cost-Efficient de Novo Template-Based Molecular Generationcited by 5
- 2025Symmetry-Aware GFlowNetscited by 4
- 2023Benchmarking Bayesian Causal Discovery Methods for Downstream Treatment Effect Estimationcited by 3
- 2024Evolution Guided Generative Flow Networkscited by 3
- 2025GFlowGR: Fine-tuning Generative Recommendation Frameworks with Generative Flow Networkscited by 3
- 2025Relative Trajectory Balance is equivalent to Trust-PCLcited by 3
- 2025BioVerge: A Comprehensive Benchmark and Study of Self-Evaluating Agents for Biomedical Hypothesis Generationcited by 3
- 2026Avoid What You Know: Divergent Trajectory Balance for GFlowNetscited by 3
- 2026TCS-BENCH: Benchmarking State-of-the-Art Generative AI Theoretical Computer Science Research Abilitycited by 3
- 2024GFlowNets for Hamiltonian decomposition in groups of compatible operatorscited by 2
- 2025FutureGen: A RAG-based Approach to Generate the Future Work of Scientific Articlecited by 2
- 2025Discrete Compositional Generation via General Soft Operators and Robust Reinforcement Learningcited by 2
- 2025Mitigating Hallucinations in LM-Based TTS Models via Distribution Alignment Using GFlowNetscited by 2
- 2023Meta Generative Flow Networks with Personalization for Task-Specific Adaptationcited by 1
- 2023Probabilistic Generative Modeling for Procedural Roundabout Generation for Developing Countriescited by 1
- 2025A Generative Neural Annealer for Black-Box Combinatorial Optimizationcited by 1
50 most cited of 63 All 63 (JSON)
- 2026SPIBER: Reconstructing Free Energy Landscapes from Short, Unconverged Trajectories with Generative Flow Networks19 Sep 2026
- 2026Particle GFlowNets: Rethinking Generative Marginalization Models10 Sep 2026
- 2026TCS-BENCH: Benchmarking State-of-the-Art Generative AI Theoretical Computer Science Research Ability10 Aug 2026
- 2026GFlowState: Visualizing the Training of Generative Flow Networks Beyond the Reward23 Apr 2026
- 2026Generative Flow Networks for Model Adaptation in Digital Twins of Natural Systems22 Apr 2026
- 2026Routing by Reaching: Composition of Pre-trained GFlowNets for Multi-Objective Generation25 Feb 2026
- 2026Avoid What You Know: Divergent Trajectory Balance for GFlowNets19 Feb 2026
- 2025BioVerge: A Comprehensive Benchmark and Study of Self-Evaluating Agents for Biomedical Hypothesis Generation12 Nov 2025
- 2025Natural Building Blocks for Structured World Models: Theory, Evidence, and Scaling3 Nov 2025
- 2025Interpretable epistemic uncertainty decomposition in sequential generative models via polynomial chaos surrogates24 Oct 2025
- 2025LLMs for Bayesian Optimization in Scientific Domains: Are We There Yet?24 Sep 2025
- 2025FlowRL: Matching Reward Distributions for LLM Reasoning18 Sep 2025
38 more
- 2025Relative Trajectory Balance is equivalent to Trust-PCL1 Sep 2025
- 2025Mitigating Hallucinations in LM-Based TTS Models via Distribution Alignment Using GFlowNets21 Aug 2025
- 2025GFlowNets for Learning Better Drug-Drug Interaction Representations7 Aug 2025
- 2025Artificial Intelligence and Generative Models for Materials Discovery -- A Review5 Aug 2025
- 2025Expert-Guided LLM Reasoning for Battery Discovery: From AI-Driven Hypothesis to Synthesis and Characterization21 Jul 2025
- 2025Multi-Armed Sampling Problem and the End of Exploration14 Jul 2025
- 2025Discrete Compositional Generation via General Soft Operators and Robust Reinforcement Learning20 Jun 2025
- 2025GFlowGR: Fine-tuning Generative Recommendation Frameworks with Generative Flow Networks19 Jun 2025
- 2025Scalable and Cost-Efficient de Novo Template-Based Molecular Generation10 Jun 2025
- 2025Symmetry-Aware GFlowNets3 Jun 2025
- 2025Beyond the Proxy: Trajectory-Distilled Guidance for Offline GFlowNet Training26 May 2025
- 2025Advancing the Scientific Method with Large Language Models: From Hypothesis to Discovery22 May 2025
- 2025Virtual Cells: Predict, Explain, Discover20 May 2025
- 2025A Generative Neural Annealer for Black-Box Combinatorial Optimization14 May 2025
- 2025Compositional Flows for 3D Molecule and Synthesis Pathway Co-design10 Apr 2025
- 2025FutureGen: A RAG-based Approach to Generate the Future Work of Scientific Article20 Mar 2025
- 2024Efficient Diversity-Preserving Diffusion Alignment via Gradient-Informed GFlowNets10 Dec 2024
- 2024GFlowNets for Hamiltonian decomposition in groups of compatible operators21 Oct 2024
- 2024On Divergence Measures for Training GFlowNets12 Oct 2024
- 2024Improved Off-policy Reinforcement Learning in Biological Sequence Design6 Oct 2024
- 2024Beyond Squared Error: Exploring Loss Design for Enhanced Training of Generative Flow Networks3 Oct 2024
- 2024Adaptive teachers for amortized samplers2 Oct 2024
- 2024Enhancing Solution Efficiency in Reinforcement Learning: Leveraging Sub-GFlowNet and Entropy Integration1 Oct 2024
- 2024Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation12 Jul 2024
- 2024Towards Building Specialized Generalist AI with System 1 and System 2 Fusion11 Jul 2024
- 2024RetroGFN: Diverse and Feasible Retrosynthesis using GFlowNets26 Jun 2024
- 2024Improving GFlowNets with Monte Carlo Tree Search19 Jun 2024
- 2024Random Policy Evaluation Uncovers Policies of Generative Flow Networks4 Jun 2024
- 2024Looking Backward: Retrospective Backward Synthesis for Goal-Conditioned GFlowNets3 Jun 2024
- 2024Improving GFlowNets for Text-to-Image Diffusion Alignment2 Jun 2024
- 2024Towards DNA-Encoded Library Generation with GFlowNets15 Apr 2024
- 2024Dynamic Backtracking in GFlowNets: Enhancing Decision Steps with Reward-Dependent Adjustment Mechanisms8 Apr 2024
- 2024Diffusion Models as Constrained Samplers for Optimization with Unknown Constraints28 Feb 2024
- 2024Discrete Probabilistic Inference as Control in Multi-path Environments15 Feb 2024
- 2024Genetic-guided GFlowNets for Sample Efficient Molecular Optimization5 Feb 2024
- 2024Evolution Guided Generative Flow Networks3 Feb 2024
- 2023Large Language Models are Zero Shot Hypothesis Proposers10 Nov 2023
- 2023Crystal-GFN: sampling crystals with desirable properties and constraints7 Oct 2023
50 newest of 63 All 63 (JSON)
- 2024Diffusion Models as Constrained Samplers for Optimization with Unknown Constraintscited by 33
- 2024Efficient Diversity-Preserving Diffusion Alignment via Gradient-Informed GFlowNetscited by 30
- 2024Improving GFlowNets for Text-to-Image Diffusion Alignmentcited by 27
- 2025Compositional Flows for 3D Molecule and Synthesis Pathway Co-designcited by 6
- 2025Relative Trajectory Balance is equivalent to Trust-PCLcited by 3
- 2025Relative Trajectory Balance is equivalent to Trust-PCL1 Sep 2025
- 2025Compositional Flows for 3D Molecule and Synthesis Pathway Co-design10 Apr 2025
- 2024Efficient Diversity-Preserving Diffusion Alignment via Gradient-Informed GFlowNets10 Dec 2024
- 2024Improving GFlowNets for Text-to-Image Diffusion Alignment2 Jun 2024
- 2024Diffusion Models as Constrained Samplers for Optimization with Unknown Constraints28 Feb 2024
- 2023Amortizing intractable inference in large language modelscited by 94
- 2023Diffusion Generative Flow Samplers: Improving learning signals through partial trajectory optimizationcited by 57
- 2023Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Networkcited by 50
- 2023Local Search GFlowNetscited by 45
- 2023Large Language Models are Zero Shot Hypothesis Proposerscited by 45
- 2023Let the Flows Tell: Solving Graph Combinatorial Optimization Problems with GFlowNetscited by 40
- 2024Discrete Probabilistic Inference as Control in Multi-path Environmentscited by 40
- 2024Genetic-guided GFlowNets for Sample Efficient Molecular Optimizationcited by 36
- 2024Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluationcited by 33
- 2023Crystal-GFN: sampling crystals with desirable properties and constraintscited by 29
- 2023Learning to Scale Logits for Temperature-Conditional GFlowNetscited by 26
- 2024Adaptive teachers for amortized samplerscited by 23
12 most cited of 53 All 53 (JSON)
- 2026SPIBER: Reconstructing Free Energy Landscapes from Short, Unconverged Trajectories with Generative Flow Networks19 Sep 2026
- 2026Particle GFlowNets: Rethinking Generative Marginalization Models10 Sep 2026
- 2026TCS-BENCH: Benchmarking State-of-the-Art Generative AI Theoretical Computer Science Research Ability10 Aug 2026
- 2026GFlowState: Visualizing the Training of Generative Flow Networks Beyond the Reward23 Apr 2026
- 2026Generative Flow Networks for Model Adaptation in Digital Twins of Natural Systems22 Apr 2026
- 2026Routing by Reaching: Composition of Pre-trained GFlowNets for Multi-Objective Generation25 Feb 2026
- 2026Avoid What You Know: Divergent Trajectory Balance for GFlowNets19 Feb 2026
- 2025Interpretable epistemic uncertainty decomposition in sequential generative models via polynomial chaos surrogates24 Oct 2025
- 2025LLMs for Bayesian Optimization in Scientific Domains: Are We There Yet?24 Sep 2025
- 2025Mitigating Hallucinations in LM-Based TTS Models via Distribution Alignment Using GFlowNets21 Aug 2025
- 2025GFlowNets for Learning Better Drug-Drug Interaction Representations7 Aug 2025
- 2025Artificial Intelligence and Generative Models for Materials Discovery -- A Review5 Aug 2025
12 newest of 53 All 53 (JSON)