NODAGS-Flow: Nonlinear Cyclic Causal Structure Learning
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Abstract (arXiv)
Learning causal relationships between variables is a well-studied problem in statistics, with many important applications in science. However, modeling real-world systems remain challenging, as most existing algorithms assume that the underlying causal graph is acyclic. While this is a convenient framework for developing theoretical developments about causal reasoning and inference, the underlying modeling assumption is likely to be violated in real systems, because feedback loops are common (e.g., in biological systems). Although a few methods search for cyclic causal models, they usually rely on some form of linearity, which is also limiting, or lack a clear underlying probabilistic model. In this work, we propose a novel framework for learning nonlinear cyclic causal graphical models from interventional data, called NODAGS-Flow. We perform inference via direct likelihood optimization, employing techniques from residual normalizing flows for likelihood estimation. Through synthetic experiments and an application to single-cell high-content perturbation screening data, we show significant performance improvements with our approach compared to state-of-the-art methods with respect to structure recovery and predictive performance.
Key facts. Cited by 20 papers in the map (data through 7 Oct 2026). Builds on 24 of its 54 references that are in the map. First posted on arXiv 4 Jan 2023.
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24 of 54 references.
References · 24
- 2015Deep Residual Learning for Image Recognitioncited by 51,809
- 2014Adam: A Method for Stochastic Optimizationcited by 36,960
- 2016Categorical Reparameterization with Gumbel-Softmaxcited by 2,708
- 2018Spectral Normalization for Generative Adversarial Networkscited by 1,618
- 2019Normalizing Flows for Probabilistic Modeling and Inferencecited by 1,315
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- 2018Invertible Residual Networkscited by 364
- 2019DAG-GNN: DAG Structure Learning with Graph Neural Networkscited by 329
- 2019Residual Flows for Invertible Generative Modelingcited by 256
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12 more
- 2017Invariant Causal Prediction for Nonlinear Modelscited by 140
- 2020Causal Autoregressive Flowscited by 97
- 2019Masked Gradient-Based Causal Structure Learningcited by 89
- 2017Permutation-based Causal Inference Algorithms with Interventionscited by 78
- 2014Constraint-based Causal Discovery from Multiple Interventions over Overlapping Variable Setscited by 48
- 2018Structural Agnostic Modeling: Adversarial Learning of Causal Graphscited by 48
- 2022Large-Scale Differentiable Causal Discovery of Factor Graphscited by 47
- 2019Scaling structural learning with NO-BEARS to infer causal transcriptome networkscited by 39
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- 2020Structure Learning for Cyclic Linear Causal Modelscited by 13
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Citing papers per year: 2023: 3; 2024: 6; 2025: 3; 2026: 8.
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- 2023GFlowNets for AI-Driven Scientific Discoverycited by 63
- 2023Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Networkcited by 50
- 2023Causal Modeling with Stationary Diffusionscited by 19
- 2024The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applicationscited by 17
- 2024Recursive Causal Discoverycited by 12
- 2024Scalable and Flexible Causal Discovery with an Efficient Test for Adjacencycited by 5
- 2025Differentiable Cyclic Causal Discovery Under Unmeasured Confounderscited by 4
- 2024Differentiable Causal Discovery For Latent Hierarchical Causal Modelscited by 3
- 2026Efficient Learning of Stationary Diffusions with Stein-type Discrepanciescited by 2
- 2024Learning Cyclic Causal Models from Incomplete Datacited by 1
- 2024MissNODAG: Differentiable Cyclic Causal Graph Learning from Incomplete Datacited by 1
- 2025Extended Fiducial Inference for Individual Treatment Effects via Deep Neural Networkscited by 1
8 more
- 2025Score-based Greedy Search for Structure Identification of Partially Observed Linear Causal Modelscited by 1
- 2026Consistency evaluation of benchmarks used for causal discoverycited by 1
- 2026Partial Causal Structure Learning for Valid Selective Conformal Inference under Interventionscited by 0
- 2026RECLAIM: Cyclic Causal Discovery Amid Measurement Noisecited by 0
- 2026SCOUT: Cyclic Causal Discovery Under Soft Interventions with Unknown Targetscited by 0
- 2026SVI-DAG: A Structured Variational Inference Approach to Bayesian Causal Discoverycited by 0
- 2026CausalArena: Benchmarking Causal Discovery in the Foundation Model Eracited by 0
- 2026One Intervention per Component is Enough: Towards Identifiability in Linear Stochastic Dynamics from Steady Statecited by 0
- 2026One Intervention per Component is Enough: Towards Identifiability in Linear Stochastic Dynamics from Steady State17 Sep 2026
- 2026CausalArena: Benchmarking Causal Discovery in the Foundation Model Era10 Sep 2026
- 2026SVI-DAG: A Structured Variational Inference Approach to Bayesian Causal Discovery5 Aug 2026
- 2026Consistency evaluation of benchmarks used for causal discovery1 Jun 2026
- 2026SCOUT: Cyclic Causal Discovery Under Soft Interventions with Unknown Targets15 May 2026
- 2026RECLAIM: Cyclic Causal Discovery Amid Measurement Noise21 Mar 2026
- 2026Partial Causal Structure Learning for Valid Selective Conformal Inference under Interventions2 Mar 2026
- 2026Efficient Learning of Stationary Diffusions with Stein-type Discrepancies23 Jan 2026
- 2025Score-based Greedy Search for Structure Identification of Partially Observed Linear Causal Models5 Oct 2025
- 2025Differentiable Cyclic Causal Discovery Under Unmeasured Confounders11 Aug 2025
- 2025Extended Fiducial Inference for Individual Treatment Effects via Deep Neural Networks4 May 2025
- 2024The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications2 Dec 2024
8 more
- 2024Differentiable Causal Discovery For Latent Hierarchical Causal Models29 Nov 2024
- 2024MissNODAG: Differentiable Cyclic Causal Graph Learning from Incomplete Data24 Oct 2024
- 2024Scalable and Flexible Causal Discovery with an Efficient Test for Adjacency13 Jun 2024
- 2024Recursive Causal Discovery14 Mar 2024
- 2024Learning Cyclic Causal Models from Incomplete Data23 Feb 2024
- 2023Causal Modeling with Stationary Diffusions26 Oct 2023
- 2023Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Network30 May 2023
- 2023GFlowNets for AI-Driven Scientific Discovery1 Feb 2023
- 2023GFlowNets for AI-Driven Scientific Discoverycited by 63
- 2023Joint Bayesian Inference of Graphical Structure and Parameters with a Single Generative Flow Networkcited by 50
- 2023Causal Modeling with Stationary Diffusionscited by 19
- 2024The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applicationscited by 17
- 2024Recursive Causal Discoverycited by 12
- 2024Scalable and Flexible Causal Discovery with an Efficient Test for Adjacencycited by 5
- 2025Differentiable Cyclic Causal Discovery Under Unmeasured Confounderscited by 4
- 2024Differentiable Causal Discovery For Latent Hierarchical Causal Modelscited by 3
- 2026Efficient Learning of Stationary Diffusions with Stein-type Discrepanciescited by 2
- 2024Learning Cyclic Causal Models from Incomplete Datacited by 1
- 2024MissNODAG: Differentiable Cyclic Causal Graph Learning from Incomplete Datacited by 1
- 2025Extended Fiducial Inference for Individual Treatment Effects via Deep Neural Networkscited by 1
12 most cited of 19 All 19 (JSON)
- 2026One Intervention per Component is Enough: Towards Identifiability in Linear Stochastic Dynamics from Steady State17 Sep 2026
- 2026SVI-DAG: A Structured Variational Inference Approach to Bayesian Causal Discovery5 Aug 2026
- 2026Consistency evaluation of benchmarks used for causal discovery1 Jun 2026
- 2026SCOUT: Cyclic Causal Discovery Under Soft Interventions with Unknown Targets15 May 2026
- 2026RECLAIM: Cyclic Causal Discovery Amid Measurement Noise21 Mar 2026
- 2026Partial Causal Structure Learning for Valid Selective Conformal Inference under Interventions2 Mar 2026
- 2026Efficient Learning of Stationary Diffusions with Stein-type Discrepancies23 Jan 2026
- 2025Score-based Greedy Search for Structure Identification of Partially Observed Linear Causal Models5 Oct 2025
- 2025Differentiable Cyclic Causal Discovery Under Unmeasured Confounders11 Aug 2025
- 2025Extended Fiducial Inference for Individual Treatment Effects via Deep Neural Networks4 May 2025
- 2024The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications2 Dec 2024
- 2024Differentiable Causal Discovery For Latent Hierarchical Causal Models29 Nov 2024
12 newest of 19 All 19 (JSON)
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