Transition1x -- a Dataset for Building Generalizable Reactive Machine Learning Potentials
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Abstract (arXiv)
Machine Learning (ML) models have, in contrast to their usefulness in molecular dynamics studies, had limited success as surrogate potentials for reaction barrier search. It is due to the scarcity of training data in relevant transition state regions of chemical space. Currently, available datasets for training ML models on small molecular systems almost exclusively contain configurations at or near equilibrium. In this work, we present the dataset Transition1x containing 9.6 million Density Functional Theory (DFT) calculations of forces and energies of molecular configurations on and around reaction pathways at the wB97x/6-31G(d) level of theory. The data was generated by running Nudged Elastic Band (NEB) calculations with DFT on 10k reactions while saving intermediate calculations. We train state-of-the-art equivariant graph message-passing neural network models on Transition1x and cross-validate on the popular ANI1x and QM9 datasets. We show that ML models cannot learn features in transition-state regions solely by training on hitherto popular benchmark datasets. Transition1x is a new challenging benchmark that will provide an important step towards developing next-generation ML force fields that also work far away from equilibrium configurations and reactive systems.
Key facts. Cited by 37 papers in the map (data through 14 Oct 2026). Builds on 7 of its 39 references that are in the map. First posted on arXiv 25 Jul 2022.
Builds on
7 of 39 references.
References · 7
- 2014Adam: A Method for Stochastic Optimizationcited by 37,240
- 2021Equivariant message passing for the prediction of tensorial properties and molecular spectracited by 441
- 2020Machine Learning Force Fieldscited by 207
- 2019A Gentle Introduction to Deep Learning for Graphscited by 108
- 2018Less is more: sampling chemical space with active learningcited by 82
- 2020Machine learning for electronically excited states of moleculescited by 30
- 2022NeuralNEB -- Neural Networks can find Reaction Paths Fastcited by 7
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Citing papers per year: 2023: 4; 2024: 7; 2025: 12; 2026: 14.
37 papers.
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- 2023From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Predictioncited by 39
- 2023Accurate transition state generation with an object-aware equivariant elementary reaction diffusion modelcited by 30
- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applicationscited by 28
- 2025HIP: Hessian Interatomic Potentials without derivativescited by 12
- 2023Graph Neural Network Interatomic Potential Ensembles with Calibrated Aleatoric and Epistemic Uncertainty on Energy and Forcescited by 10
- 2025Accurate and scalable exchange-correlation with deep learningcited by 8
- 2024Hessian QM9: A quantum chemistry database of molecular Hessians in implicit solventscited by 7
- 2024On the design space between molecular mechanics and machine learning force fieldscited by 4
- 2024React-OT: Optimal Transport for Generating Transition State in Chemical Reactionscited by 3
- 2025Implicit Neural Representations for Chemical Reaction Pathscited by 3
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fieldscited by 3
- 2025Adaptive Pruning for Increased Robustness and Reduced Computational Overhead in Gaussian Process Accelerated Saddle Point Searchescited by 3
25 more
- 2026Pretrained Model Representations as Acquisition Signals for Active Learning of MLIPscited by 3
- 2024nabla2DFT: A Universal Quantum Chemistry Dataset of Drug-Like Molecules and a Benchmark for Neural Network Potentialscited by 2
- 2025Transferable Learning of Reaction Pathways from Geometric Priorscited by 2
- 2025Flow matching for reaction pathway generationcited by 2
- 2026FragmentFlow: Scalable Transition State Generation for Large Moleculescited by 2
- 2026Force-Aware Neural Tangent Kernels for Scalable and Robust Active Learning of MLIPscited by 2
- 2024Generative Model for Constructing Reaction Path from Initial to Final Statescited by 1
- 2025Machine Learning - Driven Materials Discovery: Unlocking Next-Generation Functional Materials - A reviewcited by 1
- 2025Towards Faster and More Compact Foundation Models for Molecular Property Predictioncited by 1
- 2025Multi-task parallelism for robust pre-training of graph foundation models on multi-source, multi-fidelity atomistic modeling datacited by 1
- 2023Coherent energy and force uncertainty in deep learning force fieldscited by 0
- 2024OpenQDC: Open Quantum Data Commonscited by 0
- 2025On the Importance of Pretraining Data Alignment for Atomic Property Predictioncited by 0
- 2025LaMM: Semi-Supervised Pre-Training of Large-Scale Materials Modelscited by 0
- 2026A Tutorial Review of Bayesian Optimization with Gaussian Processes to Accelerate Stationary Point Searchescited by 0
- 2026Chem4DLLM: 4D Multimodal LLMs for Chemical Dynamics Understandingcited by 0
- 2026Hessian-informed machine learning interatomic potential towards bridging theory and experimentscited by 0
- 2026Exascale Multi-Task Graph Foundation Models for Imbalanced, Multi-Fidelity Atomistic Datacited by 0
- 2026Benchmarking Compositional Generalisation for Machine Learning Interatomic Potentialscited by 0
- 2026Reaction-Transformation-Aware Flow Matching for Generalizable Transition State Generationcited by 0
- 2026ReCurveflow: A Flow Matching Framework that Learns Curved Reaction Trajectories to Predict Transition State Geometriescited by 0
- 2026Generate in the Chart, Not on the Boundary: Function-Symbol Grounding for Hard Constraints in LTN-GANscited by 0
- 2026AdaptNTK: Adaptive Uncertainty Quantification and Active Learning for Neural Network Potentialscited by 0
- 2026Hessian-Informed Conformation Augmentation for Potential Energy Surface Curvature in Machine Learning Interatomic Potentialscited by 0
- 2026SoLiD26: A First Principles Solid-Liquid Interface Dataset for Machine-learned Interatomic Potentialscited by 0
- 2026SoLiD26: A First Principles Solid-Liquid Interface Dataset for Machine-learned Interatomic Potentials23 Sep 2026
- 2026Hessian-Informed Conformation Augmentation for Potential Energy Surface Curvature in Machine Learning Interatomic Potentials4 Sep 2026
- 2026AdaptNTK: Adaptive Uncertainty Quantification and Active Learning for Neural Network Potentials31 Aug 2026
- 2026Generate in the Chart, Not on the Boundary: Function-Symbol Grounding for Hard Constraints in LTN-GANs21 Aug 2026
- 2026ReCurveflow: A Flow Matching Framework that Learns Curved Reaction Trajectories to Predict Transition State Geometries21 Aug 2026
- 2026Reaction-Transformation-Aware Flow Matching for Generalizable Transition State Generation14 Aug 2026
- 2026Force-Aware Neural Tangent Kernels for Scalable and Robust Active Learning of MLIPs13 May 2026
- 2026Benchmarking Compositional Generalisation for Machine Learning Interatomic Potentials9 May 2026
- 2026Pretrained Model Representations as Acquisition Signals for Active Learning of MLIPs5 May 2026
- 2026Exascale Multi-Task Graph Foundation Models for Imbalanced, Multi-Fidelity Atomistic Data15 Apr 2026
- 2026Hessian-informed machine learning interatomic potential towards bridging theory and experiments26 Mar 2026
- 2026Chem4DLLM: 4D Multimodal LLMs for Chemical Dynamics Understanding12 Mar 2026
25 more
- 2026A Tutorial Review of Bayesian Optimization with Gaussian Processes to Accelerate Stationary Point Searches11 Mar 2026
- 2026FragmentFlow: Scalable Transition State Generation for Large Molecules2 Feb 2026
- 2025Adaptive Pruning for Increased Robustness and Reduced Computational Overhead in Gaussian Process Accelerated Saddle Point Searches7 Oct 2025
- 2025HIP: Hessian Interatomic Potentials without derivatives25 Sep 2025
- 2025Flow matching for reaction pathway generation14 Jul 2025
- 2025Multi-task parallelism for robust pre-training of graph foundation models on multi-source, multi-fidelity atomistic modeling data26 Jun 2025
- 2025Accurate and scalable exchange-correlation with deep learning17 Jun 2025
- 2025LaMM: Semi-Supervised Pre-Training of Large-Scale Materials Models28 May 2025
- 2025Towards Faster and More Compact Foundation Models for Molecular Property Prediction28 Apr 2025
- 2025Transferable Learning of Reaction Pathways from Geometric Priors21 Apr 2025
- 2025Machine Learning - Driven Materials Discovery: Unlocking Next-Generation Functional Materials - A review22 Mar 2025
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fields11 Mar 2025
- 2025Implicit Neural Representations for Chemical Reaction Paths20 Feb 2025
- 2025On the Importance of Pretraining Data Alignment for Atomic Property Prediction16 Feb 2025
- 2024OpenQDC: Open Quantum Data Commons29 Nov 2024
- 2024On the design space between molecular mechanics and machine learning force fields3 Sep 2024
- 2024Hessian QM9: A quantum chemistry database of molecular Hessians in implicit solvents15 Aug 2024
- 2024nabla2DFT: A Universal Quantum Chemistry Dataset of Drug-Like Molecules and a Benchmark for Neural Network Potentials20 Jun 2024
- 2024React-OT: Optimal Transport for Generating Transition State in Chemical Reactions20 Apr 2024
- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications1 Mar 2024
- 2024Generative Model for Constructing Reaction Path from Initial to Final States19 Jan 2024
- 2023Coherent energy and force uncertainty in deep learning force fields7 Dec 2023
- 2023From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction25 Oct 2023
- 2023Graph Neural Network Interatomic Potential Ensembles with Calibrated Aleatoric and Epistemic Uncertainty on Energy and Forces10 May 2023
- 2023Accurate transition state generation with an object-aware equivariant elementary reaction diffusion model12 Apr 2023
- 2023From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Predictioncited by 39
- 2023Accurate transition state generation with an object-aware equivariant elementary reaction diffusion modelcited by 30
- 2024A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applicationscited by 28
- 2025HIP: Hessian Interatomic Potentials without derivativescited by 12
- 2023Graph Neural Network Interatomic Potential Ensembles with Calibrated Aleatoric and Epistemic Uncertainty on Energy and Forcescited by 10
- 2025Accurate and scalable exchange-correlation with deep learningcited by 8
- 2024Hessian QM9: A quantum chemistry database of molecular Hessians in implicit solventscited by 7
- 2024On the design space between molecular mechanics and machine learning force fieldscited by 4
- 2024React-OT: Optimal Transport for Generating Transition State in Chemical Reactionscited by 3
- 2025Implicit Neural Representations for Chemical Reaction Pathscited by 3
- 2025Understanding and Mitigating Distribution Shifts For Machine Learning Force Fieldscited by 3
- 2025Adaptive Pruning for Increased Robustness and Reduced Computational Overhead in Gaussian Process Accelerated Saddle Point Searchescited by 3
12 most cited of 35 All 35 (JSON)
- 2026SoLiD26: A First Principles Solid-Liquid Interface Dataset for Machine-learned Interatomic Potentials23 Sep 2026
- 2026Hessian-Informed Conformation Augmentation for Potential Energy Surface Curvature in Machine Learning Interatomic Potentials4 Sep 2026
- 2026AdaptNTK: Adaptive Uncertainty Quantification and Active Learning for Neural Network Potentials31 Aug 2026
- 2026Generate in the Chart, Not on the Boundary: Function-Symbol Grounding for Hard Constraints in LTN-GANs21 Aug 2026
- 2026Reaction-Transformation-Aware Flow Matching for Generalizable Transition State Generation14 Aug 2026
- 2026Force-Aware Neural Tangent Kernels for Scalable and Robust Active Learning of MLIPs13 May 2026
- 2026Benchmarking Compositional Generalisation for Machine Learning Interatomic Potentials9 May 2026
- 2026Pretrained Model Representations as Acquisition Signals for Active Learning of MLIPs5 May 2026
- 2026Exascale Multi-Task Graph Foundation Models for Imbalanced, Multi-Fidelity Atomistic Data15 Apr 2026
- 2026Hessian-informed machine learning interatomic potential towards bridging theory and experiments26 Mar 2026
- 2026Chem4DLLM: 4D Multimodal LLMs for Chemical Dynamics Understanding12 Mar 2026
- 2026A Tutorial Review of Bayesian Optimization with Gaussian Processes to Accelerate Stationary Point Searches11 Mar 2026
12 newest of 35 All 35 (JSON)