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A Tutorial Review of Bayesian Optimization with Gaussian Processes to Accelerate Stationary Point Searches

arXiv 2603.10992 ↗First posted 11 Mar 2026stat.ML cs.LG physics.chem-phcited by 0

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Abstract (arXiv)

Building local surrogates to accelerate stationary point searches on potential energy surfaces spans decades of effort. Done correctly, surrogates can reduce the number of expensive electronic structure evaluations by roughly an order of magnitude while preserving the accuracy of the underlying theory, with the gain depending on oracle cost, search distance, and the availability of analytical forces. We present a unified Bayesian optimization view of minimization, single-point saddle searches, and double-ended path searches: all three share one six-step surrogate loop and differ only in the inner optimization target and the acquisition criterion. The framework uses Gaussian process regression with derivative observations, inverse-distance kernels, and active learning, and we develop optional extensions for production use, including farthest-point sampling with the Earth Mover's Distance, MAP regularization, an adaptive trust radius, and random Fourier features for scaling. Accompanying pedagogical Rust code demonstrates that all three applications use the same Bayesian optimization loop, bridging the gap between theoretical formulation and practical execution.

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References · 12

  1. 2021Convex optimizationcited by 2,479
  2. 2022Transition1x -- a Dataset for Building Generalizable Reactive Machine Learning Potentialscited by 37
  3. 2015AiiDA: Automated Interactive Infrastructure and Database for Computational Sciencecited by 20
  4. 2026Pushing the limits of unconstrained machine-learned interatomic potentialscited by 11
  5. 2017Nudged elastic band calculations accelerated with Gaussian process regressioncited by 7
  6. 2022Algorithmic Differentiation for Automated Modeling of Machine Learned Force Fieldscited by 7
  7. 2023Wigner kernels: body-ordered equivariant machine learning without a basiscited by 7
  8. 2021IRA: A shape matching approach for recognition and comparison of generic atomic patternscited by 5
  9. 2025Efficient Implementation of Gaussian Process Regression Accelerated Saddle Point Searches with Application to Molecular Reactionscited by 4
  10. 2022Sliced gradient-enhanced Kriging for high-dimensional function approximationcited by 3
  11. 2025Adaptive Pruning for Increased Robustness and Reduced Computational Overhead in Gaussian Process Accelerated Saddle Point Searchescited by 3
  12. 2025Two-dimensional RMSD projections for reaction path visualization and validationcited by 2

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