Contextual Semantic Embeddings for Ontology Subsumption Prediction
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Abstract (arXiv)
Automating ontology construction and curation is an important but challenging task in knowledge engineering and artificial intelligence. Prediction by machine learning techniques such as contextual semantic embedding is a promising direction, but the relevant research is still preliminary especially for expressive ontologies in Web Ontology Language (OWL). In this paper, we present a new subsumption prediction method named BERTSubs for classes of OWL ontology. It exploits the pre-trained language model BERT to compute contextual embeddings of a class, where customized templates are proposed to incorporate the class context (e.g., neighbouring classes) and the logical existential restriction. BERTSubs is able to predict multiple kinds of subsumers including named classes from the same ontology or another ontology, and existential restrictions from the same ontology. Extensive evaluation on five real-world ontologies for three different subsumption tasks has shown the effectiveness of the templates and that BERTSubs can dramatically outperform the baselines that use (literal-aware) knowledge graph embeddings, non-contextual word embeddings and the state-of-the-art OWL ontology embeddings.
Key facts. Cited by 31 papers in the map (data through 7 Oct 2026). Builds on 21 of its 57 references that are in the map. First posted on arXiv 20 Feb 2022.
Builds on
21 of 57 references.
References · 21
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9 more
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Citing papers per year: 2022: 1; 2023: 13; 2024: 10; 2025: 5; 2026: 2.
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- 2023Large Language Models and Knowledge Graphs: Opportunities and Challengescited by 71
- 2024Language Models as Hierarchy Encoderscited by 26
- 2023Language Model Analysis for Ontology Subsumption Inferencecited by 25
- 2023Towards Ontology Construction with Language Modelscited by 23
- 2022Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matchingcited by 21
- 2023Dual Box Embeddings for the Description Logic EL++cited by 21
- 2023DeepOnto: A Python Package for Ontology Engineering with Deep Learningcited by 20
- 2024Research Trends for the Interplay between Large Language Models and Knowledge Graphscited by 14
- 2024Ontology Embedding: A Survey of Methods, Applications and Resourcescited by 12
- 2023Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunitiescited by 10
- 2023Distilling Semantic Concept Embeddings from Contrastively Fine-Tuned Language Modelscited by 8
- 2023Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placementcited by 7
19 more
- 2025Evaluating Knowledge Graph Based Retrieval Augmented Generation Methods under Knowledge Incompletenesscited by 7
- 2024TransBox: EL++-closed Ontology Embeddingcited by 5
- 2024Ontology Completion with Natural Language Inference and Concept Embeddings: An Analysiscited by 4
- 2025Language Models as Ontology Encoderscited by 4
- 2023From axioms over graphs to vectors, and back again: evaluating the properties of graph-based ontology embeddingscited by 3
- 2023Prompting Disentangled Embeddings for Knowledge Graph Completion with Pre-trained Language Modelcited by 3
- 2024A Language Model based Framework for New Concept Placement in Ontologiescited by 3
- 2024Using Large Language Models for OntoClean-based Ontology Refinementcited by 3
- 2024A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Predictioncited by 2
- 2025Taxonomy Inference for Tabular Data Using Large Language Modelscited by 2
- 2025GenOM: Ontology Matching with Description Generation and Large Language Modelcited by 2
- 2023Current and Future Challenges in Knowledge Representation and Reasoningcited by 1
- 2023RelBERT: Embedding Relations with Language Modelscited by 1
- 2024OWL2Vec4OA: Tailoring Knowledge Graph Embeddings for Ontology Alignmentcited by 1
- 2025OntoAligner Meets Knowledge Graph Embedding Alignerscited by 1
- 2023Lattice-preserving ALC ontology embeddings with saturationcited by 0
- 2024Can Structured Data Reduce Epistemic Uncertainty?cited by 0
- 2026NeurOWL: An LLM-Based Neural-symbolic Framework for Incomplete OWL Ontology Reasoningcited by 0
- 2026AgentMap: Joint Equivalence and Subsumption Discovery for Ontology Matchingcited by 0
- 2026AgentMap: Joint Equivalence and Subsumption Discovery for Ontology Matching29 Jul 2026
- 2026NeurOWL: An LLM-Based Neural-symbolic Framework for Incomplete OWL Ontology Reasoning17 Jul 2026
- 2025OntoAligner Meets Knowledge Graph Embedding Aligners30 Sep 2025
- 2025GenOM: Ontology Matching with Description Generation and Large Language Model14 Aug 2025
- 2025Language Models as Ontology Encoders18 Jul 2025
- 2025Evaluating Knowledge Graph Based Retrieval Augmented Generation Methods under Knowledge Incompleteness7 Apr 2025
- 2025Taxonomy Inference for Tabular Data Using Large Language Models25 Mar 2025
- 2024TransBox: EL++-closed Ontology Embedding18 Oct 2024
- 2024Can Structured Data Reduce Epistemic Uncertainty?14 Oct 2024
- 2024OWL2Vec4OA: Tailoring Knowledge Graph Embeddings for Ontology Alignment12 Aug 2024
- 2024Ontology Embedding: A Survey of Methods, Applications and Resources16 Jun 2024
- 2024Research Trends for the Interplay between Large Language Models and Knowledge Graphs12 Jun 2024
19 more
- 2024Ontology Completion with Natural Language Inference and Concept Embeddings: An Analysis25 Mar 2024
- 2024Using Large Language Models for OntoClean-based Ontology Refinement23 Mar 2024
- 2024A Language Model based Framework for New Concept Placement in Ontologies27 Feb 2024
- 2024A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Prediction26 Feb 2024
- 2024Language Models as Hierarchy Encoders21 Jan 2024
- 2023Prompting Disentangled Embeddings for Knowledge Graph Completion with Pre-trained Language Model4 Dec 2023
- 2023RelBERT: Embedding Relations with Language Models30 Sep 2023
- 2023Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities29 Sep 2023
- 2023Towards Ontology Construction with Language Models18 Sep 2023
- 2023Large Language Models and Knowledge Graphs: Opportunities and Challenges11 Aug 2023
- 2023Current and Future Challenges in Knowledge Representation and Reasoning8 Aug 2023
- 2023DeepOnto: A Python Package for Ontology Engineering with Deep Learning6 Jul 2023
- 2023Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement26 Jun 2023
- 2023Distilling Semantic Concept Embeddings from Contrastively Fine-Tuned Language Models16 May 2023
- 2023Lattice-preserving ALC ontology embeddings with saturation11 May 2023
- 2023From axioms over graphs to vectors, and back again: evaluating the properties of graph-based ontology embeddings29 Mar 2023
- 2023Language Model Analysis for Ontology Subsumption Inference14 Feb 2023
- 2023Dual Box Embeddings for the Description Logic EL++26 Jan 2023
- 2022Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching6 May 2022
- 2023Large Language Models and Knowledge Graphs: Opportunities and Challengescited by 71
- 2024Language Models as Hierarchy Encoderscited by 26
- 2023Language Model Analysis for Ontology Subsumption Inferencecited by 25
- 2023Towards Ontology Construction with Language Modelscited by 23
- 2022Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matchingcited by 21
- 2023Dual Box Embeddings for the Description Logic EL++cited by 21
- 2023DeepOnto: A Python Package for Ontology Engineering with Deep Learningcited by 20
- 2024Research Trends for the Interplay between Large Language Models and Knowledge Graphscited by 14
- 2024Ontology Embedding: A Survey of Methods, Applications and Resourcescited by 12
- 2023Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunitiescited by 10
- 2023Distilling Semantic Concept Embeddings from Contrastively Fine-Tuned Language Modelscited by 8
- 2023Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placementcited by 7
12 most cited of 29 All 29 (JSON)
- 2026AgentMap: Joint Equivalence and Subsumption Discovery for Ontology Matching29 Jul 2026
- 2025OntoAligner Meets Knowledge Graph Embedding Aligners30 Sep 2025
- 2025GenOM: Ontology Matching with Description Generation and Large Language Model14 Aug 2025
- 2025Language Models as Ontology Encoders18 Jul 2025
- 2025Taxonomy Inference for Tabular Data Using Large Language Models25 Mar 2025
- 2024TransBox: EL++-closed Ontology Embedding18 Oct 2024
- 2024Can Structured Data Reduce Epistemic Uncertainty?14 Oct 2024
- 2024OWL2Vec4OA: Tailoring Knowledge Graph Embeddings for Ontology Alignment12 Aug 2024
- 2024Ontology Embedding: A Survey of Methods, Applications and Resources16 Jun 2024
- 2024Research Trends for the Interplay between Large Language Models and Knowledge Graphs12 Jun 2024
- 2024Ontology Completion with Natural Language Inference and Concept Embeddings: An Analysis25 Mar 2024
- 2024Using Large Language Models for OntoClean-based Ontology Refinement23 Mar 2024
12 newest of 29 All 29 (JSON)