mlsanityData to 14 Oct 2026

Knowledge Graph Embedding for Link Prediction: A Comparative Analysis

arXiv 2002.00819 ↗First posted 3 Feb 2020cs.LG cs.DB stat.MLcited by 85

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Abstract (arXiv)

Knowledge Graphs (KGs) have found many applications in industry and academic settings, which in turn, have motivated considerable research efforts towards large-scale information extraction from a variety of sources. Despite such efforts, it is well known that even state-of-the-art KGs suffer from incompleteness. Link Prediction (LP), the task of predicting missing facts among entities already a KG, is a promising and widely studied task aimed at addressing KG incompleteness. Among the recent LP techniques, those based on KG embeddings have achieved very promising performances in some benchmarks. Despite the fast growing literature in the subject, insufficient attention has been paid to the effect of the various design choices in those methods. Moreover, the standard practice in this area is to report accuracy by aggregating over a large number of test facts in which some entities are over-represented; this allows LP methods to exhibit good performance by just attending to structural properties that include such entities, while ignoring the remaining majority of the KG. This analysis provides a comprehensive comparison of embedding-based LP methods, extending the dimensions of analysis beyond what is commonly available in the literature. We experimentally compare effectiveness and efficiency of 16 state-of-the-art methods, consider a rule-based baseline, and report detailed analysis over the most popular benchmarks in the literature.

Key facts. Cited by 85 papers in the map (data through 14 Oct 2026). First posted on arXiv 3 Feb 2020.

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Citing papers per year: 2021: 15; 2022: 25; 2023: 23; 2024: 11; 2025: 10; 2026: 1.

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  1. 2023LLMs for Knowledge Graph Construction and Reasoning: Recent Capabilities and Future Opportunitiescited by 97
  2. 2021Knowledge Graph Reasoning with Relational Digraphcited by 92
  3. 2022Multi-Modal Knowledge Graph Construction and Application: A Surveycited by 74
  4. 2023Knowledge Graphs: Opportunities and Challengescited by 70
  5. 2022Temporal Knowledge Graph Completion: A Surveycited by 61
  6. 2022Contextual Semantic Embeddings for Ontology Subsumption Predictioncited by 31
  7. 2021Role-Aware Modeling for N-ary Relational Knowledge Basescited by 29
  8. 2022Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matchingcited by 22
  9. 2021Understanding the Performance of Knowledge Graph Embeddings in Drug Discoverycited by 18
  10. 2021A Survey of Knowledge Graph Embedding and Their Applicationscited by 17
  11. 2023Toward Degree Bias in Embedding-Based Knowledge Graph Completioncited by 17
  12. 2024Research on Adverse Drug Reaction Prediction Model Combining Knowledge Graph Embedding and Deep Learningcited by 17
38 more
  1. 2021SAFRAN: An interpretable, rule-based link prediction method outperforming embedding modelscited by 15
  2. 2022Multi-task Pre-training Language Model for Semantic Network Completioncited by 15
  3. 2022I Know What You Do Not Know: Knowledge Graph Embedding via Co-distillation Learningcited by 15
  4. 2022KGLM: Integrating Knowledge Graph Structure in Language Models for Link Predictioncited by 15
  5. 2021Graph Collaborative Reasoningcited by 14
  6. 2022Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completioncited by 13
  7. 2021Bilinear Scoring Function Search for Knowledge Graph Learningcited by 11
  8. 2021Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphscited by 11
  9. 2023Sem@K: Is my knowledge graph embedding model semantic-aware?cited by 10
  10. 2023Knowledge Graph Embedding: An Overviewcited by 10
  11. 2021Relational Graph Convolutional Networks: A Closer Lookcited by 8
  12. 2021Recommender systems based on graph embedding techniques: A comprehensive reviewcited by 8
  13. 2023Message Intercommunication for Inductive Relation Reasoningcited by 8
  14. 2024Comprehensible Artificial Intelligence on Knowledge Graphs: A surveycited by 8
  15. 2024SpherE: Expressive and Interpretable Knowledge Graph Embedding for Set Retrievalcited by 8
  16. 2022KGTuner: Efficient Hyper-parameter Search for Knowledge Graph Learningcited by 7
  17. 2021Benchmarking Knowledge-driven Zero-shot Learningcited by 6
  18. 2022Inductive Knowledge Graph Reasoning for Multi-batch Emerging Entitiescited by 6
  19. 2025Biomedical Knowledge Graph: A Survey of Domains, Tasks, and Real-World Applicationscited by 6
  20. 2022ARIEL: Adversarial Graph Contrastive Learningcited by 5
  21. 2023Recent advances in artificial intelligence for retrosynthesiscited by 5
  22. 2023Joint Pre-training and Local Re-training: Transferable Representation Learning on Multi-source Knowledge Graphscited by 5
  23. 2023Federated Knowledge Graph Completion via Latent Embedding Sharing and Tensor Factorizationcited by 5
  24. 2023Exploring & Exploiting High-Order Graph Structure for Sparse Knowledge Graph Completioncited by 4
  25. 2023Local Structure-aware Graph Contrastive Representation Learningcited by 4
  26. 2023Cardinality Estimation over Knowledge Graphs with Embeddings and Graph Neural Networkscited by 3
  27. 2024A Condensed Transition Graph Framework for Zero-shot Link Prediction with Large Language Modelscited by 3
  28. 2024Test-Time Training on Graphs with Large Language Models (LLMs)cited by 3
  29. 2025Inductive Link Prediction on N-ary Relational Facts via Semantic Hypergraph Reasoningcited by 3
  30. 2025Social Biases in Knowledge Representations of Wikidata separates Global North from Global Southcited by 3
  31. 2021Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddingscited by 2
  32. 2023Diversity matters: Robustness of bias measurements in Wikidatacited by 2
  33. 2023LogicRec: Recommendation with Users' Logical Requirementscited by 2
  34. 2023Event Prediction using Case-Based Reasoning over Knowledge Graphscited by 2
  35. 2023Beyond Transduction: A Survey on Inductive, Few Shot, and Zero Shot Link Prediction in Knowledge Graphscited by 2
  36. 2023Probing Pretrained Language Models with Hierarchy Propertiescited by 2
  37. 2024DRExplainer: Quantifiable Interpretability in Drug Response Prediction with Directed Graph Convolutional Networkcited by 2
  38. 2024Cluster-Enhanced Federated Graph Neural Network for Recommendationcited by 2

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