Dual Box Embeddings for the Description Logic EL++
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Abstract (arXiv)
OWL ontologies, whose formal semantics are rooted in Description Logic (DL), have been widely used for knowledge representation. Similar to Knowledge Graphs (KGs), ontologies are often incomplete, and maintaining and constructing them has proved challenging. While classical deductive reasoning algorithms use the precise formal semantics of an ontology to predict missing facts, recent years have witnessed growing interest in inductive reasoning techniques that can derive probable facts from an ontology. Similar to KGs, a promising approach is to learn ontology embeddings in a latent vector space, while additionally ensuring they adhere to the semantics of the underlying DL. While a variety of approaches have been proposed, current ontology embedding methods suffer from several shortcomings, especially that they all fail to faithfully model one-to-many, many-to-one, and many-to-many relations and role inclusion axioms. To address this problem and improve ontology completion performance, we propose a novel ontology embedding method named Box2EL for the DL EL++, which represents both concepts and roles as boxes (i.e., axis-aligned hyperrectangles), and models inter-concept relationships using a bumping mechanism. We theoretically prove the soundness of Box2EL and conduct an extensive experimental evaluation, achieving state-of-the-art results across a variety of datasets on the tasks of subsumption prediction, role assertion prediction, and approximating deductive reasoning.
Key facts. Cited by 21 papers in the map (data through 14 Oct 2026). Builds on 13 of its 46 references that are in the map. First posted on arXiv 26 Jan 2023.
Builds on
13 of 46 references.
References · 13
- 2014Adam: A Method for Stochastic Optimizationcited by 37,240
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
- 2016Complex Embeddings for Simple Link Predictioncited by 902
- 2020Knowledge Graphscited by 621
- 2020BoxE: A Box Embedding Model for Knowledge Base Completioncited by 105
- 2020OWL2Vec*: Embedding of OWL Ontologiescited by 63
- 2019EL Embeddings: Geometric construction of models for the Description Logic EL ++cited by 48
- 2021Universal Representation Learning of Knowledge Bases by Jointly Embedding Instances and Ontological Conceptscited by 37
- 2022Contextual Semantic Embeddings for Ontology Subsumption Predictioncited by 31
- 2018OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based predictioncited by 25
- 2021OntoEA: Ontology-guided Entity Alignment via Joint Knowledge Graph Embeddingcited by 19
- 2022Description Logic EL++ Embeddings with Intersectional Closurecited by 16
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Citing papers per year: 2023: 3; 2024: 8; 2025: 2; 2026: 8.
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- 2024Ontology Embedding: A Survey of Methods, Applications and Resourcescited by 12
- 2024Approximating Probabilistic Inference in Statistical EL with Knowledge Graph Embeddingscited by 5
- 2024TransBox: EL++-closed Ontology Embeddingcited by 5
- 2025Language Models as Ontology Encoderscited by 5
- 2024DAGE: DAG Query Answering via Relational Combinator with Logical Constraintscited by 4
- 2023Towards Semantically Enriched Embeddings for Knowledge Graph Completioncited by 3
- 2026To Neuro-Symbolic Classification and Beyond by Compiling Description Logic Ontologies to Probabilistic Circuitscited by 3
- 2024A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Predictioncited by 2
- 2024Knowledge Base Embeddings: Semantics and Theoretical Propertiescited by 2
- 2023Towards Consistent Language Models Using Declarative Constraintscited by 1
- 2024Enhancing Geometric Ontology Embeddings for EL++ with Negative Sampling and Deductive Closure Filteringcited by 1
- 2025RegD: Hierarchical Embeddings via Dissimilarity between Arbitrary Euclidean Regionscited by 1
9 more
- 2026Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Predictioncited by 1
- 2023Lattice-preserving ALC ontology embeddings with saturationcited by 0
- 2024DELE: Deductive EL++ Embeddings for Knowledge Base Completioncited by 0
- 2026PROMPT2BOX:Improving LLM Weakness Discovery and Specificity Estimation by Uncovering Entailment Structure among Promptscited by 0
- 2026BoxLitE: A Faithful Knowledge Base Embedding Based on Convex Optimizationcited by 0
- 2026NeurOWL: An LLM-Based Neural-symbolic Framework for Incomplete OWL Ontology Reasoningcited by 0
- 2026Neuro-symbolic learning over OWL 2 DL via consequence-based compilation to differentiable circuitscited by 0
- 2026Hierarchy-Aware Semantic Losses for Knowledge Graph Link Predictioncited by 0
- 2026A hierarchy of faithfulness criteria for knowledge base completioncited by 0
- 2026Hierarchy-Aware Semantic Losses for Knowledge Graph Link Prediction24 Aug 2026
- 2026A hierarchy of faithfulness criteria for knowledge base completion20 Aug 2026
- 2026Neuro-symbolic learning over OWL 2 DL via consequence-based compilation to differentiable circuits18 Aug 2026
- 2026NeurOWL: An LLM-Based Neural-symbolic Framework for Incomplete OWL Ontology Reasoning17 Jul 2026
- 2026Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction5 May 2026
- 2026BoxLitE: A Faithful Knowledge Base Embedding Based on Convex Optimization27 Apr 2026
- 2026PROMPT2BOX:Improving LLM Weakness Discovery and Specificity Estimation by Uncovering Entailment Structure among Prompts22 Mar 2026
- 2026To Neuro-Symbolic Classification and Beyond by Compiling Description Logic Ontologies to Probabilistic Circuits21 Jan 2026
- 2025Language Models as Ontology Encoders18 Jul 2025
- 2025RegD: Hierarchical Embeddings via Dissimilarity between Arbitrary Euclidean Regions29 Jan 2025
- 2024DELE: Deductive EL++ Embeddings for Knowledge Base Completion3 Nov 2024
- 2024DAGE: DAG Query Answering via Relational Combinator with Logical Constraints29 Oct 2024
9 more
- 2024TransBox: EL++-closed Ontology Embedding18 Oct 2024
- 2024Knowledge Base Embeddings: Semantics and Theoretical Properties9 Aug 2024
- 2024Approximating Probabilistic Inference in Statistical EL with Knowledge Graph Embeddings16 Jul 2024
- 2024Ontology Embedding: A Survey of Methods, Applications and Resources16 Jun 2024
- 2024Enhancing Geometric Ontology Embeddings for EL++ with Negative Sampling and Deductive Closure Filtering8 May 2024
- 2024A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Prediction26 Feb 2024
- 2023Towards Consistent Language Models Using Declarative Constraints24 Dec 2023
- 2023Towards Semantically Enriched Embeddings for Knowledge Graph Completion31 Jul 2023
- 2023Lattice-preserving ALC ontology embeddings with saturation11 May 2023
- 2024Ontology Embedding: A Survey of Methods, Applications and Resourcescited by 12
- 2024Approximating Probabilistic Inference in Statistical EL with Knowledge Graph Embeddingscited by 5
- 2024TransBox: EL++-closed Ontology Embeddingcited by 5
- 2025Language Models as Ontology Encoderscited by 5
- 2024DAGE: DAG Query Answering via Relational Combinator with Logical Constraintscited by 4
- 2023Towards Semantically Enriched Embeddings for Knowledge Graph Completioncited by 3
- 2026To Neuro-Symbolic Classification and Beyond by Compiling Description Logic Ontologies to Probabilistic Circuitscited by 3
- 2024A Self-matching Training Method with Annotation Embedding Models for Ontology Subsumption Predictioncited by 2
- 2024Knowledge Base Embeddings: Semantics and Theoretical Propertiescited by 2
- 2023Towards Consistent Language Models Using Declarative Constraintscited by 1
- 2024Enhancing Geometric Ontology Embeddings for EL++ with Negative Sampling and Deductive Closure Filteringcited by 1
- 2025RegD: Hierarchical Embeddings via Dissimilarity between Arbitrary Euclidean Regionscited by 1
12 most cited of 20 All 20 (JSON)
- 2026Hierarchy-Aware Semantic Losses for Knowledge Graph Link Prediction24 Aug 2026
- 2026A hierarchy of faithfulness criteria for knowledge base completion20 Aug 2026
- 2026Neuro-symbolic learning over OWL 2 DL via consequence-based compilation to differentiable circuits18 Aug 2026
- 2026Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction5 May 2026
- 2026BoxLitE: A Faithful Knowledge Base Embedding Based on Convex Optimization27 Apr 2026
- 2026PROMPT2BOX:Improving LLM Weakness Discovery and Specificity Estimation by Uncovering Entailment Structure among Prompts22 Mar 2026
- 2026To Neuro-Symbolic Classification and Beyond by Compiling Description Logic Ontologies to Probabilistic Circuits21 Jan 2026
- 2025Language Models as Ontology Encoders18 Jul 2025
- 2025RegD: Hierarchical Embeddings via Dissimilarity between Arbitrary Euclidean Regions29 Jan 2025
- 2024DELE: Deductive EL++ Embeddings for Knowledge Base Completion3 Nov 2024
- 2024DAGE: DAG Query Answering via Relational Combinator with Logical Constraints29 Oct 2024
- 2024TransBox: EL++-closed Ontology Embedding18 Oct 2024
12 newest of 20 All 20 (JSON)
Similar, not cited
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- 2022FLEX: Feature-Logic Embedding Framework for CompleX Knowledge Graph Reasoning
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