Deconfounding to Explanation Evaluation in Graph Neural Networks
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Abstract (arXiv)
Explainability of graph neural networks (GNNs) aims to answer "Why the GNN made a certain prediction?", which is crucial to interpret the model prediction. The feature attribution framework distributes a GNN's prediction to its input features (e.g., edges), identifying an influential subgraph as the explanation. When evaluating the explanation (i.e., subgraph importance), a standard way is to audit the model prediction based on the subgraph solely. However, we argue that a distribution shift exists between the full graph and the subgraph, causing the out-of-distribution problem. Furthermore, with an in-depth causal analysis, we find the OOD effect acts as the confounder, which brings spurious associations between the subgraph importance and model prediction, making the evaluation less reliable. In this work, we propose Deconfounded Subgraph Evaluation (DSE) which assesses the causal effect of an explanatory subgraph on the model prediction. While the distribution shift is generally intractable, we employ the front-door adjustment and introduce a surrogate variable of the subgraphs. Specifically, we devise a generative model to generate the plausible surrogates that conform to the data distribution, thus approaching the unbiased estimation of subgraph importance. Empirical results demonstrate the effectiveness of DSE in terms of explanation fidelity.
Key facts. Cited by 10 papers in the map (data through 7 Oct 2026). Builds on 34 of its 50 references that are in the map. First posted on arXiv 21 Jan 2022.
Builds on
34 of 50 references.
References · 34
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22 more
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Citing papers per year: 2022: 2; 2023: 3; 2024: 3; 2025: 2.
10 papers.
- 2022Out-Of-Distribution Generalization on Graphs: A Surveycited by 97
- 2023Predicting the Silent Majority on Graphs: Knowledge Transferable Graph Neural Networkcited by 10
- 2023Bridged-GNN: Knowledge Bridge Learning for Effective Knowledge Transfercited by 10
- 2024Causal Deciphering and Inpainting in Spatio-Temporal Dynamics via Diffusion Modelcited by 6
- 2022Discovering the Representation Bottleneck of Graph Neural Networkscited by 4
- 2023When Graph Neural Network Meets Causality: Opportunities, Methodologies and An Outlookcited by 4
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal Viewcited by 3
- 2025A Recipe for Causal Graph Regression: Confounding Effects Revisitedcited by 3
- 2024DeCaf: A Causal Decoupling Framework for OOD Generalization on Node Classificationcited by 2
- 2025Evolving Graph Learning for Out-of-Distribution Generalization in Non-stationary Environmentscited by 2
- 2025Evolving Graph Learning for Out-of-Distribution Generalization in Non-stationary Environments4 Nov 2025
- 2025A Recipe for Causal Graph Regression: Confounding Effects Revisited1 Jul 2025
- 2024DeCaf: A Causal Decoupling Framework for OOD Generalization on Node Classification27 Oct 2024
- 2024Causal Deciphering and Inpainting in Spatio-Temporal Dynamics via Diffusion Model29 Sep 2024
- 2024A Survey of Out-of-distribution Generalization for Graph Machine Learning from a Causal View15 Sep 2024
- 2023When Graph Neural Network Meets Causality: Opportunities, Methodologies and An Outlook19 Dec 2023
- 2023Bridged-GNN: Knowledge Bridge Learning for Effective Knowledge Transfer18 Aug 2023
- 2023Predicting the Silent Majority on Graphs: Knowledge Transferable Graph Neural Network2 Feb 2023
- 2022Discovering the Representation Bottleneck of Graph Neural Networks15 May 2022
- 2022Out-Of-Distribution Generalization on Graphs: A Survey16 Feb 2022