Discovering the Representation Bottleneck of Graph Neural Networks
Not on the map. Why?
Abstract (arXiv)
Graph neural networks (GNNs) rely mainly on the message-passing paradigm to propagate node features and build interactions, and different graph learning problems require different ranges of node interactions. In this work, we explore the capacity of GNNs to capture node interactions under contexts of different complexities. We discover that GNNs usually fail to capture the most informative kinds of interaction styles for diverse graph learning tasks, and thus name this phenomenon GNNs' representation bottleneck. As a response, we demonstrate that the inductive bias introduced by existing graph construction mechanisms can result in this representation bottleneck, i.e., preventing GNNs from learning interactions of the most appropriate complexity. To address that limitation, we propose a novel graph rewiring approach based on interaction patterns learned by GNNs to dynamically adjust each node's receptive fields. Extensive experiments on both real-world and synthetic datasets prove the effectiveness of our algorithm in alleviating the representation bottleneck and its superiority in enhancing the performance of GNNs over state-of-the-art graph rewiring baselines.
Key facts. Cited by 4 papers in the map (data through 14 Oct 2026). Builds on 58 of its 96 references that are in the map. First posted on arXiv 15 May 2022.
Builds on
58 of 96 references.
References · 58
- 2017Attention Is All You Needcited by 60,361
- 2015Deep Residual Learning for Image Recognitioncited by 52,096
- 2014Adam: A Method for Stochastic Optimizationcited by 37,240
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
- 2017Graph Attention Networkscited by 8,923
- 2014ImageNet Large Scale Visual Recognition Challengecited by 8,498
- 2017A Unified Approach to Interpreting Model Predictionscited by 6,555
- 2017Inductive Representation Learning on Large Graphscited by 6,320
- 2020Training data-efficient image transformers & distillation through attentioncited by 4,586
- 2018How Powerful are Graph Neural Networks?cited by 4,393
- 2017Neural Message Passing for Quantum Chemistrycited by 3,487
- 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,163
38 more
- 2021MLP-Mixer: An all-MLP Architecture for Visioncited by 1,446
- 2020Sharpness-Aware Minimization for Efficiently Improving Generalizationcited by 1,417
- 2018Relational inductive biases, deep learning, and graph networkscited by 1,360
- 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,102
- 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,051
- 2018Predict then Propagate: Graph Neural Networks meet Personalized PageRankcited by 993
- 2021E(n) Equivariant Graph Neural Networkscited by 965
- 2020Learning to Simulate Complex Physics with Graph Networkscited by 880
- 2020Geom-GCN: Geometric Graph Convolutional Networkscited by 826
- 2019Graph Neural Networks for Social Recommendationcited by 714
- 2019Hamiltonian Neural Networkscited by 712
- 2020On the Bottleneck of Graph Neural Networks and its Practical Implicationscited by 631
- 2017Exploring Generalization in Deep Learningcited by 600
- 2019Measuring and Relieving the Over-smoothing Problem for Graph Neural Networks from the Topological Viewcited by 545
- 2017Opening the Black Box of Deep Neural Networks via Informationcited by 503
- 2020Graph Neural Networks in Recommender Systems: A Surveycited by 494
- 2021Understanding over-squashing and bottlenecks on graphs via curvaturecited by 478
- 2019Diffusion Improves Graph Learningcited by 414
- 2018Adversarial Attacks on Neural Networks for Graph Datacited by 397
- 2018Invariant and Equivariant Graph Networkscited by 346
- 2020Discovering Symbolic Models from Deep Learning with Inductive Biasescited by 344
- 2020SIGN: Scalable Inception Graph Neural Networkscited by 284
- 2020Fast and Uncertainty-Aware Directional Message Passing for Non-Equilibrium Moleculescited by 255
- 2018Sensitivity and Generalization in Neural Networks: an Empirical Studycited by 189
- 2022Discovering Invariant Rationales for Graph Neural Networkscited by 188
- 2018Evaluating the Robustness of Neural Networks: An Extreme Value Theory Approachcited by 182
- 2022EquiBind: Geometric Deep Learning for Drug Binding Structure Predictioncited by 144
- 2020Graph Information Bottleneck for Subgraph Recognitioncited by 119
- 2019Explaining Deep Neural Networks with a Polynomial Time Algorithm for Shapley Values Approximationcited by 115
- 2021SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networkscited by 110
- 2018Flexible Neural Representation for Physics Predictioncited by 91
- 2020Differentiable Graph Module (DGM) for Graph Convolutional Networkscited by 86
- 2021Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Dockingcited by 82
- 2017Detecting Statistical Interactions from Neural Network Weightscited by 80
- 2020Tackling Over-Smoothing for General Graph Convolutional Networkscited by 66
- 2019Stiffness: A New Perspective on Generalization in Neural Networkscited by 46
- 2021Discovering and Explaining the Representation Bottleneck of DNNscited by 42
- 2022Rewiring with Positional Encodings for Graph Neural Networkscited by 36
50 most cited of 58 All 58 (JSON)
Built on by
Citing papers per year: 2023: 1; 2024: 0; 2025: 3.
4 papers.
- 2023Rethinking Explaining Graph Neural Networks via Non-parametric Subgraph Matchingcited by 8
- 2025Graph-to-Vision: Multi-graph Understanding and Reasoning using Vision-Language Modelscited by 5
- 2025A Metric for the Balance of Information in Graph Learningcited by 0
- 2025Attn-JGNN: Attention Enhanced Join-Graph Neural Networkscited by 0
- 2025Attn-JGNN: Attention Enhanced Join-Graph Neural Networks17 Oct 2025
- 2025Graph-to-Vision: Multi-graph Understanding and Reasoning using Vision-Language Models27 Mar 2025
- 2025A Metric for the Balance of Information in Graph Learning31 Jan 2025
- 2023Rethinking Explaining Graph Neural Networks via Non-parametric Subgraph Matching7 Jan 2023