RelEx: A Model-Agnostic Relational Model Explainer
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Abstract (arXiv)
In recent years, considerable progress has been made on improving the interpretability of machine learning models. This is essential, as complex deep learning models with millions of parameters produce state of the art results, but it can be nearly impossible to explain their predictions. While various explainability techniques have achieved impressive results, nearly all of them assume each data instance to be independent and identically distributed (iid). This excludes relational models, such as Statistical Relational Learning (SRL), and the recently popular Graph Neural Networks (GNNs), resulting in few options to explain them. While there does exist one work on explaining GNNs, GNN-Explainer, they assume access to the gradients of the model to learn explanations, which is restrictive in terms of its applicability across non-differentiable relational models and practicality. In this work, we develop RelEx, a model-agnostic relational explainer to explain black-box relational models with only access to the outputs of the black-box. RelEx is able to explain any relational model, including SRL models and GNNs. We compare RelEx to the state-of-the-art relational explainer, GNN-Explainer, and relational extensions of iid explanation models and show that RelEx achieves comparable or better performance, while remaining model-agnostic.
Key facts. Cited by 53 papers in the map (data through 7 Oct 2026). First posted on arXiv 30 May 2020.
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Citing papers per year: 2021: 3; 2022: 13; 2023: 8; 2024: 15; 2025: 11; 2026: 3.
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- 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainabilitycited by 118
- 2022Trustworthy Graph Neural Networks: Aspects, Methods and Trendscited by 88
- 2022GraphFramEx: Towards Systematic Evaluation of Explainability Methods for Graph Neural Networkscited by 57
- 2021A Survey on Graph-Based Deep Learning for Computational Histopathologycited by 41
- 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 34
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2021MEG: Generating Molecular Counterfactual Explanations for Deep Graph Networkscited by 32
- 2023A Survey on Explainability of Graph Neural Networkscited by 28
- 2022A Survey of Explainable Graph Neural Networks: Taxonomy and Evaluation Metricscited by 26
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
- 2024GNNShap: Scalable and Accurate GNN Explanation using Shapley Valuescited by 12
- 2025Graph Neural Networks in Modern AI-aided Drug Discoverycited by 12
38 more
- 2022MotifExplainer: a Motif-based Graph Neural Network Explainercited by 11
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- 2023Interpretable Sparsification of Brain Graphs: Better Practices and Effective Designs for Graph Neural Networkscited by 11
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarkingcited by 11
- 2022Deconfounding to Explanation Evaluation in Graph Neural Networkscited by 10
- 2024GOAt: Explaining Graph Neural Networks via Graph Output Attributioncited by 10
- 2024Explaining Graph Neural Networks via Structure-aware Interaction Indexcited by 10
- 2022Defending Against Backdoor Attack on Graph Nerual Network by Explainabilitycited by 9
- 2023A Survey on Explainable Artificial Intelligence for Cybersecuritycited by 9
- 2024Comprehensible Artificial Intelligence on Knowledge Graphs: A surveycited by 8
- 2024Graph Neural Network Causal Explanation via Neural Causal Modelscited by 8
- 2022L2XGNN: Learning to Explain Graph Neural Networkscited by 7
- 2024MAGE: Model-Level Graph Neural Networks Explanations via Motif-based Graph Generationcited by 7
- 2022GRAPHSHAP: Explaining Identity-Aware Graph Classifiers Through the Language of Motifscited by 6
- 2023Efficient GNN Explanation via Learning Removal-based Attributioncited by 6
- 2025Recent Advances in Malware Detection: Graph Learning and Explainabilitycited by 6
- 2023ENGAGE: Explanation Guided Data Augmentation for Graph Representation Learningcited by 5
- 2024EiG-Search: Generating Edge-Induced Subgraphs for GNN Explanation in Linear Timecited by 5
- 2025B-XAIC Dataset: Benchmarking Explainable AI for Graph Neural Networks Using Chemical Datacited by 4
- 2022On the Limit of Explaining Black-box Temporal Graph Neural Networkscited by 3
- 2023Semantic Interpretation and Validation of Graph Attention-based Explanations for GNN Modelscited by 3
- 2023Counterfactual Explanations for Graph Classification Through the Lenses of Densitycited by 2
- 2024Game-theoretic Counterfactual Explanation for Graph Neural Networkscited by 2
- 2024Generating Human Understandable Explanations for Node Embeddingscited by 2
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretabilitycited by 2
- 2024Towards Understanding Sensitive and Decisive Patterns in Explainable AI: A Case Study of Model Interpretation in Geometric Deep Learningcited by 1
- 2025Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networkscited by 1
- 2025SliceGX: Layer-wise GNN Explanation with Model-slicingcited by 1
- 2025Explainable Graph Neural Networks via Structural Externalitiescited by 1
- 2025Database Views as Explanations for Relational Deep Learningcited by 1
- 2024Beyond Fidelity: Explaining Vulnerability Localization of Learning-based Detectorscited by 0
- 2024GNNAnatomy: Rethinking Model-Level Explanations for Graph Neural Networkscited by 0
- 2024MBExplainer: Multilevel bandit-based explanations for downstream models with augmented graph embeddingscited by 0
- 2024Do graph neural network states contain graph properties?cited by 0
- 2024The GECo algorithm for Graph Neural Networks Explanationcited by 0
- 2025DistShap: Scalable GNN Explanations with Distributed Shapley Valuescited by 0
- 2025Two Birds with One Stone: Enhancing Uncertainty Quantification and Interpretability with Graph Functional Neural Processcited by 0
- 2025ARM-Explainer -- Explaining and improving graph neural network predictions for the maximum clique problem using node features and association rule miningcited by 0
50 most cited of 53 All 53 (JSON)
- 2026Towards Faithful Graph Explanations with Synergistic Edge Effects via Granular Balls23 Jul 2026
- 2026Estimating Subgraph Importance with Structural Prior Domain Knowledge12 May 2026
- 2026TACENR: Task-Agnostic Contrastive Explanations for Node Representations21 Apr 2026
- 2025ARM-Explainer -- Explaining and improving graph neural network predictions for the maximum clique problem using node features and association rule mining28 Nov 2025
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretability22 Sep 2025
- 2025Database Views as Explanations for Relational Deep Learning11 Sep 2025
- 2025Two Birds with One Stone: Enhancing Uncertainty Quantification and Interpretability with Graph Functional Neural Process23 Aug 2025
- 2025Explainable Graph Neural Networks via Structural Externalities19 Jul 2025
- 2025DistShap: Scalable GNN Explanations with Distributed Shapley Values27 Jun 2025
- 2025SliceGX: Layer-wise GNN Explanation with Model-slicing22 Jun 2025
- 2025Graph Neural Networks in Modern AI-aided Drug Discovery7 Jun 2025
- 2025B-XAIC Dataset: Benchmarking Explainable AI for Graph Neural Networks Using Chemical Data28 May 2025
38 more
- 2025Interpretability of Graph Neural Networks to Assess Effects of Global Change Drivers on Ecological Networks19 Mar 2025
- 2025Recent Advances in Malware Detection: Graph Learning and Explainability14 Feb 2025
- 2024The GECo algorithm for Graph Neural Networks Explanation18 Nov 2024
- 2024Do graph neural network states contain graph properties?4 Nov 2024
- 2024MBExplainer: Multilevel bandit-based explanations for downstream models with augmented graph embeddings1 Nov 2024
- 2024Graph Neural Network Causal Explanation via Neural Causal Models12 Jul 2024
- 2024Towards Understanding Sensitive and Decisive Patterns in Explainable AI: A Case Study of Model Interpretation in Geometric Deep Learning30 Jun 2024
- 2024Generating Human Understandable Explanations for Node Embeddings11 Jun 2024
- 2024GNNAnatomy: Rethinking Model-Level Explanations for Graph Neural Networks6 Jun 2024
- 2024Explaining Graph Neural Networks via Structure-aware Interaction Index23 May 2024
- 2024MAGE: Model-Level Graph Neural Networks Explanations via Motif-based Graph Generation21 May 2024
- 2024EiG-Search: Generating Edge-Induced Subgraphs for GNN Explanation in Linear Time2 May 2024
- 2024Comprehensible Artificial Intelligence on Knowledge Graphs: A survey4 Apr 2024
- 2024Game-theoretic Counterfactual Explanation for Graph Neural Networks8 Feb 2024
- 2024GOAt: Explaining Graph Neural Networks via Graph Output Attribution26 Jan 2024
- 2024GNNShap: Scalable and Accurate GNN Explanation using Shapley Values9 Jan 2024
- 2024Beyond Fidelity: Explaining Vulnerability Localization of Learning-based Detectors5 Jan 2024
- 2023GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth Benchmarking3 Oct 2023
- 2023Semantic Interpretation and Validation of Graph Attention-based Explanations for GNN Models8 Aug 2023
- 2023Counterfactual Explanations for Graph Classification Through the Lenses of Density27 Jul 2023
- 2023ENGAGE: Explanation Guided Data Augmentation for Graph Representation Learning3 Jul 2023
- 2023Interpretable Sparsification of Brain Graphs: Better Practices and Effective Designs for Graph Neural Networks26 Jun 2023
- 2023Efficient GNN Explanation via Learning Removal-based Attribution9 Jun 2023
- 2023A Survey on Explainability of Graph Neural Networks2 Jun 2023
- 2023A Survey on Explainable Artificial Intelligence for Cybersecurity7 Mar 2023
- 2022On the Limit of Explaining Black-box Temporal Graph Neural Networks2 Dec 2022
- 2022Explaining the Explainers in Graph Neural Networks: a Comparative Study27 Oct 2022
- 2022L2XGNN: Learning to Explain Graph Neural Networks28 Sep 2022
- 2022Defending Against Backdoor Attack on Graph Nerual Network by Explainability7 Sep 2022
- 2022A Survey of Explainable Graph Neural Networks: Taxonomy and Evaluation Metrics26 Jul 2022
- 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanations28 Jun 2022
- 2022GraphFramEx: Towards Systematic Evaluation of Explainability Methods for Graph Neural Networks20 Jun 2022
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protection20 May 2022
- 2022Trustworthy Graph Neural Networks: Aspects, Methods and Trends16 May 2022
- 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainability18 Apr 2022
- 2022GRAPHSHAP: Explaining Identity-Aware Graph Classifiers Through the Language of Motifs17 Feb 2022
- 2022MotifExplainer: a Motif-based Graph Neural Network Explainer1 Feb 2022
- 2022Deconfounding to Explanation Evaluation in Graph Neural Networks21 Jan 2022
50 newest of 53 All 53 (JSON)
- 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainabilitycited by 118
- 2022Trustworthy Graph Neural Networks: Aspects, Methods and Trendscited by 88
- 2022GraphFramEx: Towards Systematic Evaluation of Explainability Methods for Graph Neural Networkscited by 57
- 2021A Survey on Graph-Based Deep Learning for Computational Histopathologycited by 41
- 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 34
- 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
- 2021MEG: Generating Molecular Counterfactual Explanations for Deep Graph Networkscited by 32
- 2023A Survey on Explainability of Graph Neural Networkscited by 28
- 2022A Survey of Explainable Graph Neural Networks: Taxonomy and Evaluation Metricscited by 26
- 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
- 2024GNNShap: Scalable and Accurate GNN Explanation using Shapley Valuescited by 12
- 2025Graph Neural Networks in Modern AI-aided Drug Discoverycited by 12
12 most cited of 52 All 52 (JSON)
- 2026Towards Faithful Graph Explanations with Synergistic Edge Effects via Granular Balls23 Jul 2026
- 2026Estimating Subgraph Importance with Structural Prior Domain Knowledge12 May 2026
- 2026TACENR: Task-Agnostic Contrastive Explanations for Node Representations21 Apr 2026
- 2025ARM-Explainer -- Explaining and improving graph neural network predictions for the maximum clique problem using node features and association rule mining28 Nov 2025
- 2025GnnXemplar: Exemplars to Explanations -- Natural Language Rules for Global GNN Interpretability22 Sep 2025
- 2025Database Views as Explanations for Relational Deep Learning11 Sep 2025
- 2025Two Birds with One Stone: Enhancing Uncertainty Quantification and Interpretability with Graph Functional Neural Process23 Aug 2025
- 2025Explainable Graph Neural Networks via Structural Externalities19 Jul 2025
- 2025DistShap: Scalable GNN Explanations with Distributed Shapley Values27 Jun 2025
- 2025SliceGX: Layer-wise GNN Explanation with Model-slicing22 Jun 2025
- 2025Graph Neural Networks in Modern AI-aided Drug Discovery7 Jun 2025
- 2025B-XAIC Dataset: Benchmarking Explainable AI for Graph Neural Networks Using Chemical Data28 May 2025
12 newest of 52 All 52 (JSON)