mlsanityData to 7 Oct 2026

Interpreting Graph Neural Networks for NLP With Differentiable Edge Masking

arXiv 2010.00577 ↗First posted 1 Oct 2020cs.CL cs.LG stat.MLcited by 152

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Abstract (arXiv)

Graph neural networks (GNNs) have become a popular approach to integrating structural inductive biases into NLP models. However, there has been little work on interpreting them, and specifically on understanding which parts of the graphs (e.g. syntactic trees or co-reference structures) contribute to a prediction. In this work, we introduce a post-hoc method for interpreting the predictions of GNNs which identifies unnecessary edges. Given a trained GNN model, we learn a simple classifier that, for every edge in every layer, predicts if that edge can be dropped. We demonstrate that such a classifier can be trained in a fully differentiable fashion, employing stochastic gates and encouraging sparsity through the expected L0 norm. We use our technique as an attribution method to analyze GNN models for two tasks -- question answering and semantic role labeling -- providing insights into the information flow in these models. We show that we can drop a large proportion of edges without deteriorating the performance of the model, while we can analyse the remaining edges for interpreting model predictions.

Key facts. Cited by 152 papers in the map (data through 7 Oct 2026). First posted on arXiv 1 Oct 2020.

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Citing papers per year: 2021: 20; 2022: 33; 2023: 29; 2024: 31; 2025: 23; 2026: 16.

152 papers.

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  1. 2021On Explainability of Graph Neural Networks via Subgraph Explorationscited by 280
  2. 2022Interpretable and Generalizable Graph Learning via Stochastic Attention Mechanismcited by 171
  3. 2021CF-GNNExplainer: Counterfactual Explanations for Graph Neural Networkscited by 118
  4. 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainabilitycited by 118
  5. 2021ProtGNN: Towards Self-Explaining Graph Neural Networkscited by 96
  6. 2022Trustworthy Graph Neural Networks: Aspects, Methods and Trendscited by 88
  7. 2022Evaluating Explainability for Graph Neural Networkscited by 85
  8. 2021A Review of the Gumbel-max Trick and its Extensions for Discrete Stochasticity in Machine Learningcited by 82
  9. 2021GraphSVX: Shapley Value Explanations for Graph Neural Networkscited by 63
  10. 2025PyG 2.0: Scalable Learning on Real World Graphscited by 49
  11. 2021Improving Subgraph Recognition with Variational Graph Information Bottleneckcited by 45
  12. 2021A Survey on Graph-Based Deep Learning for Computational Histopathologycited by 41
38 more
  1. 2021Probing GNN Explainers: A Rigorous Theoretical and Empirical Analysis of GNN Explanation Methodscited by 36
  2. 2021Zorro: Valid, Sparse, and Stable Explanations in Graph Neural Networkscited by 34
  3. 2021Sparse Interventions in Language Models with Differentiable Maskingcited by 34
  4. 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 34
  5. 2022OrphicX: A Causality-Inspired Latent Variable Model for Interpreting Graph Neural Networkscited by 33
  6. 2023Inductive Graph Unlearningcited by 30
  7. 2023A Survey on Explainability of Graph Neural Networkscited by 28
  8. 2022Interpretable Geometric Deep Learning via Learnable Randomness Injectioncited by 27
  9. 2023DAG Matters! GFlowNets Enhanced Explainer For Graph Neural Networkscited by 27
  10. 2023TempME: Towards the Explainability of Temporal Graph Neural Networks via Motif Discoverycited by 27
  11. 2022GREASE: Generate Factual and Counterfactual Explanations for GNN-based Recommendationscited by 22
  12. 2023Identifying and Adapting Transformer-Components Responsible for Gender Bias in an English Language Modelcited by 22
  13. 2024Optimal ablation for interpretabilitycited by 21
  14. 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
  15. 2022FlowX: Towards Explainable Graph Neural Networks via Message Flowscited by 20
  16. 2023Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Reviewcited by 20
  17. 2024EXGC: Bridging Efficiency and Explainability in Graph Condensationcited by 20
  18. 2021Interpreting Deep Learning Models in Natural Language Processing: A Reviewcited by 19
  19. 2024Graph Neural Network Explanations are Fragilecited by 18
  20. 2022Explainability in Graph Neural Networks: An Experimental Surveycited by 16
  21. 2021A Meta-Learning Approach for Training Explainable Graph Neural Networkscited by 15
  22. 2022On Structural Explanation of Bias in Graph Neural Networkscited by 15
  23. 2021Mediators in Determining what Processing BERT Performs Firstcited by 14
  24. 2022Learning Graph Augmentations to Learn Graph Representationscited by 14
  25. 2022Orders Are Unwanted: Dynamic Deep Graph Convolutional Network for Personality Detectioncited by 14
  26. 2023Illuminati: Towards Explaining Graph Neural Networks for Cybersecurity Analysiscited by 14
  27. 2021BrainNNExplainer: An Interpretable Graph Neural Network Framework for Brain Network based Disease Analysiscited by 13
  28. 2023Explainable Spatio-Temporal Graph Neural Networkscited by 13
  29. 2024How Interpretable Are Interpretable Graph Neural Networks?cited by 13
  30. 2024GNNShap: Scalable and Accurate GNN Explanation using Shapley Valuescited by 12
  31. 2025Exact Computation of Any-Order Shapley Interactions for Graph Neural Networkscited by 12
  32. 2022MotifExplainer: a Motif-based Graph Neural Network Explainercited by 11
  33. 2022BAGEL: A Benchmark for Assessing Graph Neural Network Explanationscited by 11
  34. 2022Deconfounding to Explanation Evaluation in Graph Neural Networkscited by 10
  35. 2022Towards Explainable Motion Prediction using Heterogeneous Graph Representationscited by 10
  36. 2024GOAt: Explaining Graph Neural Networks via Graph Output Attributioncited by 10
  37. 2024Explaining Graph Neural Networks via Structure-aware Interaction Indexcited by 10
  38. 2022Defending Against Backdoor Attack on Graph Nerual Network by Explainabilitycited by 9

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