ToolUniverse: An open platform for democratizing AI scientists
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Abstract (arXiv)
AI scientists are emerging computational systems that serve as collaborative partners in discovery. These systems remain difficult to build because they are bespoke, tied to rigid workflows, and lack shared environments that unify tools, data, and analyses into a common ecosystem. We present ToolUniverse, an open platform for building AI scientists from any language or reasoning model across open- and closed-weight models. ToolUniverse standardizes how AI scientists identify and call tools through an AI-tool interaction standard, in which every tool declares its purpose in natural language, a typed schema for its inputs and outputs, and a backend-agnostic invocation format, and applies that standard to more than 2,700 scientific tools and over 130 research skills spanning machine learning models, datasets, APIs, and scientific packages for data analysis, knowledge retrieval, and experimental design. It automatically refines tool interfaces for correct use by AI scientists, generates new tools from natural language descriptions, iteratively optimizes tool specifications, and composes tools into agentic workflows. In case studies, ToolUniverse was used to create AI scientists that carried out end-to-end analyses in target assessment, chemical strategy, and clinical-trial safety. The open-source ToolUniverse is available at https://aiscientist.tools.
Key facts. Cited by 24 papers in the map (data through 14 Oct 2026). Builds on 4 of its 22 references that are in the map. First posted on arXiv 27 Sep 2025.
Builds on
4 of 22 references.
References · 4
- 2024LAB-Bench: Measuring Capabilities of Language Models for Biology Researchcited by 156
- 2024Empowering Biomedical Discovery with AI Agentscited by 118
- 2025TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Toolscited by 59
- 2024Risks of AI Scientists: Prioritizing Safeguarding Over Autonomycited by 49
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Citing papers per year: 2025: 9; 2026: 15.
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- 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineeringcited by 74
- 2026SKILLFOUNDRY: Building Self-Evolving Agent Skill Libraries from Heterogeneous Scientific Resourcescited by 41
- 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolutioncited by 34
- 2025Adaptation of Agentic AI: A Survey of Post-Training, Memory, and Skillscited by 22
- 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agentscited by 19
- 2025PaperArena: An Evaluation Benchmark for Tool-Augmented Agentic Reasoning on Scientific Literaturecited by 15
- 2026Benchmarking AI Agents for Addressing Scientific Challenges Across Scalescited by 12
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
- 2026AI for Auto-Research: Roadmap & User Guidecited by 11
- 2025Build Your Personalized Research Group: A Multiagent Framework for Continual and Interactive Science Automationcited by 9
- 2026Search-Time Contamination in Deep Research Agents: Measuring Performance Inflation in Public Benchmark Evaluationcited by 9
- 2026Towards a Medical AI Scientistcited by 7
12 more
- 2026Harnessing AtomisticSkills for Agentic Atomistic Researchcited by 6
- 2026SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysiscited by 4
- 2025MolAct: An Agentic RL Framework for Molecular Editing and Property Optimizationcited by 2
- 2026Large Language Models Lack Temporal Awareness of Medical Knowledgecited by 2
- 2025Structural Enforcement of Statistical Rigor in AI-Driven Discovery: A Functional Architecturecited by 1
- 2026Embodied Science: Closing the Discovery Loop with Agentic Embodied AIcited by 1
- 2025CureAgent: A Training-Free Executor-Analyst Framework for Clinical Reasoningcited by 0
- 2026Vibe Medicine: Redefining Biomedical Research Through Human-AI Co-Workcited by 0
- 2026TSAssistant: A Human-in-the-Loop Agentic Framework for Automated Target Safety Assessmentcited by 0
- 2026AgentEconomist: An End-to-end Agentic System Translating Economic Intuitions into Executable Computational Experimentscited by 0
- 2026An explainable hypothesis-driven approach to Drug-Induced Liver Injury with HADEScited by 0
- 2026Ream: Unfolding Mutual Awareness in Human-Agent Workspacescited by 0
- 2026Ream: Unfolding Mutual Awareness in Human-Agent Workspaces7 Oct 2026
- 2026SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis23 Jun 2026
- 2026Benchmarking AI Agents for Addressing Scientific Challenges Across Scales10 Jun 2026
- 2026Search-Time Contamination in Deep Research Agents: Measuring Performance Inflation in Public Benchmark Evaluation3 Jun 2026
- 2026Harnessing AtomisticSkills for Agentic Atomistic Research18 May 2026
- 2026AI for Auto-Research: Roadmap & User Guide18 May 2026
- 2026Large Language Models Lack Temporal Awareness of Medical Knowledge13 May 2026
- 2026An explainable hypothesis-driven approach to Drug-Induced Liver Injury with HADES4 May 2026
- 2026AgentEconomist: An End-to-end Agentic System Translating Economic Intuitions into Executable Computational Experiments30 Apr 2026
- 2026TSAssistant: A Human-in-the-Loop Agentic Framework for Automated Target Safety Assessment27 Apr 2026
- 2026Vibe Medicine: Redefining Biomedical Research Through Human-AI Co-Work26 Apr 2026
- 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineering9 Apr 2026
12 more
- 2026SKILLFOUNDRY: Building Self-Evolving Agent Skill Libraries from Heterogeneous Scientific Resources5 Apr 2026
- 2026Towards a Medical AI Scientist30 Mar 2026
- 2026Embodied Science: Closing the Discovery Loop with Agentic Embodied AI20 Mar 2026
- 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolution29 Dec 2025
- 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agents25 Dec 2025
- 2025MolAct: An Agentic RL Framework for Molecular Editing and Property Optimization23 Dec 2025
- 2025Adaptation of Agentic AI: A Survey of Post-Training, Memory, and Skills18 Dec 2025
- 2025CureAgent: A Training-Free Executor-Analyst Framework for Clinical Reasoning5 Dec 2025
- 2025Structural Enforcement of Statistical Rigor in AI-Driven Discovery: A Functional Architecture10 Nov 2025
- 2025Build Your Personalized Research Group: A Multiagent Framework for Continual and Interactive Science Automation17 Oct 2025
- 2025PaperArena: An Evaluation Benchmark for Tool-Augmented Agentic Reasoning on Scientific Literature13 Oct 2025
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics10 Oct 2025
- 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineeringcited by 74
- 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolutioncited by 34
- 2025Adaptation of Agentic AI: A Survey of Post-Training, Memory, and Skillscited by 22
- 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agentscited by 19
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
- 2026Harnessing AtomisticSkills for Agentic Atomistic Researchcited by 6
- 2025MolAct: An Agentic RL Framework for Molecular Editing and Property Optimizationcited by 2
- 2026Embodied Science: Closing the Discovery Loop with Agentic Embodied AIcited by 1
- 2026TSAssistant: A Human-in-the-Loop Agentic Framework for Automated Target Safety Assessmentcited by 0
- 2026AgentEconomist: An End-to-end Agentic System Translating Economic Intuitions into Executable Computational Experimentscited by 0
- 2026Harnessing AtomisticSkills for Agentic Atomistic Research18 May 2026
- 2026AgentEconomist: An End-to-end Agentic System Translating Economic Intuitions into Executable Computational Experiments30 Apr 2026
- 2026TSAssistant: A Human-in-the-Loop Agentic Framework for Automated Target Safety Assessment27 Apr 2026
- 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineering9 Apr 2026
- 2026Embodied Science: Closing the Discovery Loop with Agentic Embodied AI20 Mar 2026
- 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolution29 Dec 2025
- 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agents25 Dec 2025
- 2025MolAct: An Agentic RL Framework for Molecular Editing and Property Optimization23 Dec 2025
- 2025Adaptation of Agentic AI: A Survey of Post-Training, Memory, and Skills18 Dec 2025
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics10 Oct 2025
- 2025PaperArena: An Evaluation Benchmark for Tool-Augmented Agentic Reasoning on Scientific Literaturecited by 15
- 2026Search-Time Contamination in Deep Research Agents: Measuring Performance Inflation in Public Benchmark Evaluationcited by 9
- 2025CureAgent: A Training-Free Executor-Analyst Framework for Clinical Reasoningcited by 0
- 2026Search-Time Contamination in Deep Research Agents: Measuring Performance Inflation in Public Benchmark Evaluation3 Jun 2026
- 2025CureAgent: A Training-Free Executor-Analyst Framework for Clinical Reasoning5 Dec 2025
- 2025PaperArena: An Evaluation Benchmark for Tool-Augmented Agentic Reasoning on Scientific Literature13 Oct 2025
- 2026SKILLFOUNDRY: Building Self-Evolving Agent Skill Libraries from Heterogeneous Scientific Resourcescited by 41
- 2026Benchmarking AI Agents for Addressing Scientific Challenges Across Scalescited by 12
- 2026AI for Auto-Research: Roadmap & User Guidecited by 11
- 2025Build Your Personalized Research Group: A Multiagent Framework for Continual and Interactive Science Automationcited by 9
- 2026Towards a Medical AI Scientistcited by 7
- 2026SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysiscited by 4
- 2026Large Language Models Lack Temporal Awareness of Medical Knowledgecited by 2
- 2025Structural Enforcement of Statistical Rigor in AI-Driven Discovery: A Functional Architecturecited by 1
- 2026Vibe Medicine: Redefining Biomedical Research Through Human-AI Co-Workcited by 0
- 2026An explainable hypothesis-driven approach to Drug-Induced Liver Injury with HADEScited by 0
- 2026Ream: Unfolding Mutual Awareness in Human-Agent Workspacescited by 0
- 2026Ream: Unfolding Mutual Awareness in Human-Agent Workspaces7 Oct 2026
- 2026SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis23 Jun 2026
- 2026Benchmarking AI Agents for Addressing Scientific Challenges Across Scales10 Jun 2026
- 2026AI for Auto-Research: Roadmap & User Guide18 May 2026
- 2026Large Language Models Lack Temporal Awareness of Medical Knowledge13 May 2026
- 2026An explainable hypothesis-driven approach to Drug-Induced Liver Injury with HADES4 May 2026
- 2026Vibe Medicine: Redefining Biomedical Research Through Human-AI Co-Work26 Apr 2026
- 2026SKILLFOUNDRY: Building Self-Evolving Agent Skill Libraries from Heterogeneous Scientific Resources5 Apr 2026
- 2026Towards a Medical AI Scientist30 Mar 2026
- 2025Structural Enforcement of Statistical Rigor in AI-Driven Discovery: A Functional Architecture10 Nov 2025
- 2025Build Your Personalized Research Group: A Multiagent Framework for Continual and Interactive Science Automation17 Oct 2025
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