Harnessing AtomisticSkills for Agentic Atomistic Research
On the map: LLM agents and tool use → Medical and scientific domain agents
Abstract (arXiv)
Computational materials science and chemistry span vast knowledge domains and fractured software ecosystems. Although large language models (LLMs) have demonstrated research capabilities, scaling monolithic agents to manage the rigor and complexity of atomistic research remains a challenge. Here, we introduce AtomisticSkills, an open-source harness framework that empowers general-purpose AI coding agents to conduct atomistic research across materials science, chemistry, and drug discovery. By hierarchically decomposing scientific workflows into agent skills and tools, AtomisticSkills provides agents with modular, extensible, and plug-and-play research capabilities. The framework integrates more than 100 human-curated multidisciplinary skills, including database access, thermodynamics and kinetics modeling, and diverse simulation engines employing machine learning interatomic potentials (MLIPs) and density functional theory (DFT). We validate its functional coverage against scientific literature and demonstrate robust orchestration capabilities across diverse scientific campaigns: generative design of Li-ion solid-state electrolytes, high-throughput screening of metal-organic frameworks for CO2 capture, autonomous MLIP benchmarking and fine-tuning, multi-stage structure-based virtual screening for drug design, multimodal X-ray diffraction pattern analysis, and screening of Fe-oxide catalysts for oxygen evolution reaction. AtomisticSkills provides a critical agent infrastructure towards building fully autonomous AI scientists.
Key facts. Cited by 6 papers in the map (data through 14 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 37 of its 124 references that are in the map. First posted on arXiv 18 May 2026.
Builds on
37 of 124 references.
Closest ancestors · 3
Same direction, newest first
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- 2025El Agente: An Autonomous Agent for Quantum Chemistry5 May
- 2025BixBench: a Comprehensive Benchmark for LLM-based Agents in Computational Biology28 Feb
Other references · 34
- 2020Retrieval-Augmented Generation for Knowledge-Intensive NLP Taskscited by 9,297
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- 2026SkillsBench: Benchmarking How Well Agent Skills Work Across Diverse Taskscited by 315
- 2024AI Agents That Mattercited by 219
- 2026CoEvoSkills: Self-Evolving Agent Skills via Co-Evolutionary Verificationcited by 128
- 2025NoLiMa: Long-Context Evaluation Beyond Literal Matchingcited by 126
- 2025UMA: A Family of Universal Models for Atomscited by 105
- 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 95
- 2025Holistic Agent Leaderboard: The Missing Infrastructure for AI Agent Evaluationcited by 92
22 more
- 2025Kosmos: An AI Scientist for Autonomous Discoverycited by 92
- 2026SkillClaw: Let Skills Evolve Collectively with Agentic Evolvercited by 81
- 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineeringcited by 74
- 2024Space Group Constrained Crystal Generationcited by 73
- 2026How Well Do Agentic Skills Work in the Wild: Benchmarking LLM Skill Usage in Realistic Settingscited by 65
- 2023OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentialscited by 47
- 2026DeepPlanning: Benchmarking Long-Horizon Agentic Planning with Verifiable Constraintscited by 46
- 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolutioncited by 34
- 2024LLaMP: Large Language Model Made Powerful for High-fidelity Materials Knowledge Retrieval and Distillationcited by 32
- 2026InternAgent-1.5: A Unified Agentic Framework for Long-Horizon Autonomous Scientific Discoverycited by 27
- 2025A practical guide to machine learning interatomic potentials -- Status and futurecited by 26
- 2025ToolUniverse: An open platform for democratizing AI scientistscited by 24
- 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agentscited by 19
- 2025Predicting New Research Directions in Materials Science using Large Language Models and Concept Graphscited by 9
- 2025Aitomia: Your Intelligent Assistant for AI-Driven Atomistic and Quantum Chemical Simulationscited by 8
- 2025Bohrium + SciMaster: Building the Infrastructure and Ecosystem for Agentic Science at Scalecited by 8
- 2026MolClaw: An Autonomous Agent with Hierarchical Skills for Drug Molecule Evaluation, Screening, and Optimizationcited by 7
- 2026Agentic LLM Reasoning in a Self-Driving Laboratory for Air-Sensitive Lithium Halide Spinel Conductorscited by 6
- 2020Workflows in AiiDA: Engineering a high-throughput, event-based engine for robust and modular computational workflowscited by 4
- 2026Self-Conditioned Denoising for Atomistic Representation Learningcited by 4
- 2025Dara: Automated multiple-hypothesis phase identification and refinement from powder X-ray diffractioncited by 3
- 2026Deploy-Master: Automating the Deployment of 50,000+ Agent-Ready Scientific Tools in One Daycited by 2
Built on by
Citing papers per year: 2026: 6.
6 papers.
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gapcited by 9
- 2026Toward Auditable AI Scientists: A Hypothesis Evolution Protocol for LLM Agentscited by 3
- 2026Atomistic Language Models Understand and Generate Materialscited by 0
- 2026Science Done on a Machine by a Machine: AI Agents in Computational Chemistrycited by 0
- 2026Agentic programs: an emerging form of scientific software in computational materials sciencecited by 0
- 2026El Agente Potente: High-Throughput Agentic Atomistic Simulationscited by 0
- 2026El Agente Potente: High-Throughput Agentic Atomistic Simulations13 Sep 2026
- 2026Agentic programs: an emerging form of scientific software in computational materials science1 Sep 2026
- 2026Science Done on a Machine by a Machine: AI Agents in Computational Chemistry19 Aug 2026
- 2026Toward Auditable AI Scientists: A Hypothesis Evolution Protocol for LLM Agents10 Jul 2026
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gap29 Jun 2026
- 2026Atomistic Language Models Understand and Generate Materials19 Jun 2026
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