mlsanityData to 14 Oct 2026

Harnessing AtomisticSkills for Agentic Atomistic Research

arXiv 2605.24002 ↗First posted 18 May 2026physics.chem-ph cond-mat.mtrl-sci cs.AIcited by 6

On the map: LLM agents and tool use → Medical and scientific domain agents

Abstract (arXiv)

Computational materials science and chemistry span vast knowledge domains and fractured software ecosystems. Although large language models (LLMs) have demonstrated research capabilities, scaling monolithic agents to manage the rigor and complexity of atomistic research remains a challenge. Here, we introduce AtomisticSkills, an open-source harness framework that empowers general-purpose AI coding agents to conduct atomistic research across materials science, chemistry, and drug discovery. By hierarchically decomposing scientific workflows into agent skills and tools, AtomisticSkills provides agents with modular, extensible, and plug-and-play research capabilities. The framework integrates more than 100 human-curated multidisciplinary skills, including database access, thermodynamics and kinetics modeling, and diverse simulation engines employing machine learning interatomic potentials (MLIPs) and density functional theory (DFT). We validate its functional coverage against scientific literature and demonstrate robust orchestration capabilities across diverse scientific campaigns: generative design of Li-ion solid-state electrolytes, high-throughput screening of metal-organic frameworks for CO2 capture, autonomous MLIP benchmarking and fine-tuning, multi-stage structure-based virtual screening for drug design, multimodal X-ray diffraction pattern analysis, and screening of Fe-oxide catalysts for oxygen evolution reaction. AtomisticSkills provides a critical agent infrastructure towards building fully autonomous AI scientists.

Key facts. Cited by 6 papers in the map (data through 14 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 37 of its 124 references that are in the map. First posted on arXiv 18 May 2026.

Builds on

37 of 124 references.

Closest ancestors · 3

Same direction, newest first

  1. 2025GENIUS: An Agentic AI Framework for Autonomous Design and Execution of Simulation Protocols6 Dec
  2. 2025El Agente: An Autonomous Agent for Quantum Chemistry5 May
  3. 2025BixBench: a Comprehensive Benchmark for LLM-based Agents in Computational Biology28 Feb

Other references · 34

  1. 2020Retrieval-Augmented Generation for Knowledge-Intensive NLP Taskscited by 9,297
  2. 2023Lost in the Middle: How Language Models Use Long Contextscited by 3,455
  3. 2024RULER: What's the Real Context Size of Your Long-Context Language Models?cited by 1,346
  4. 2023Large Language Models Can Be Easily Distracted by Irrelevant Contextcited by 841
  5. 2023ChemCrow: Augmenting large-language models with chemistry toolscited by 631
  6. 2026SkillsBench: Benchmarking How Well Agent Skills Work Across Diverse Taskscited by 315
  7. 2024AI Agents That Mattercited by 219
  8. 2026CoEvoSkills: Self-Evolving Agent Skills via Co-Evolutionary Verificationcited by 128
  9. 2025NoLiMa: Long-Context Evaluation Beyond Literal Matchingcited by 126
  10. 2025UMA: A Family of Universal Models for Atomscited by 105
  11. 2022Forces are not Enough: Benchmark and Critical Evaluation for Machine Learning Force Fields with Molecular Simulationscited by 95
  12. 2025Holistic Agent Leaderboard: The Missing Infrastructure for AI Agent Evaluationcited by 92
22 more
  1. 2025Kosmos: An AI Scientist for Autonomous Discoverycited by 92
  2. 2026SkillClaw: Let Skills Evolve Collectively with Agentic Evolvercited by 81
  3. 2026Externalization in LLM Agents: A Unified Review of Memory, Skills, Protocols and Harness Engineeringcited by 74
  4. 2024Space Group Constrained Crystal Generationcited by 73
  5. 2026How Well Do Agentic Skills Work in the Wild: Benchmarking LLM Skill Usage in Realistic Settingscited by 65
  6. 2023OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentialscited by 47
  7. 2026DeepPlanning: Benchmarking Long-Horizon Agentic Planning with Verifiable Constraintscited by 46
  8. 2025CASCADE: Cumulative Agentic Skill Creation through Autonomous Development and Evolutioncited by 34
  9. 2024LLaMP: Large Language Model Made Powerful for High-fidelity Materials Knowledge Retrieval and Distillationcited by 32
  10. 2026InternAgent-1.5: A Unified Agentic Framework for Long-Horizon Autonomous Scientific Discoverycited by 27
  11. 2025A practical guide to machine learning interatomic potentials -- Status and futurecited by 26
  12. 2025ToolUniverse: An open platform for democratizing AI scientistscited by 24
  13. 2025Accelerating Scientific Discovery with Autonomous Goal-evolving Agentscited by 19
  14. 2025Predicting New Research Directions in Materials Science using Large Language Models and Concept Graphscited by 9
  15. 2025Aitomia: Your Intelligent Assistant for AI-Driven Atomistic and Quantum Chemical Simulationscited by 8
  16. 2025Bohrium + SciMaster: Building the Infrastructure and Ecosystem for Agentic Science at Scalecited by 8
  17. 2026MolClaw: An Autonomous Agent with Hierarchical Skills for Drug Molecule Evaluation, Screening, and Optimizationcited by 7
  18. 2026Agentic LLM Reasoning in a Self-Driving Laboratory for Air-Sensitive Lithium Halide Spinel Conductorscited by 6
  19. 2020Workflows in AiiDA: Engineering a high-throughput, event-based engine for robust and modular computational workflowscited by 4
  20. 2026Self-Conditioned Denoising for Atomistic Representation Learningcited by 4
  21. 2025Dara: Automated multiple-hypothesis phase identification and refinement from powder X-ray diffractioncited by 3
  22. 2026Deploy-Master: Automating the Deployment of 50,000+ Agent-Ready Scientific Tools in One Daycited by 2

Built on by

Cited by year (2026 to 14 Oct)

Citing papers per year: 2026: 6.

6 papers.

Similar, not cited

Close in wording, no citation either way

  1. 2026An Agentic Orchestration of Atomistic Simulations
  2. 2025ChemGraph: An Agentic Framework for Computational Chemistry Workflows
  3. 2025Hierarchical Multi-agent Large Language Model Reasoning for Autonomous Functional Materials Discovery
  4. 2026QUASAR: A Universal Autonomous System for Atomistic Simulation and a Benchmark of Its Capabilities
  5. 2026Reasoning-Driven Design of Single Atom Catalysts via a Multi-Agent Large Language Model Framework
  6. 2025AGAPI-Agents: An Open-Access Agentic AI Platform for Accelerated Materials Design on AtomGPT.org
  7. 2025DREAMS: Density Functional Theory Based Research Engine for Agentic Materials Simulation
  8. 2026Autonomous computational catalysis through an agentic research system