mlsanityData to 7 Oct 2026

ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoning

arXiv 2501.06590 ↗First posted 11 Jan 2025cs.CL cs.AIcited by 41

On the map: LLM reasoning → Clinical and biomedical applications

Abstract (arXiv)

Chemical reasoning usually involves complex, multi-step processes that demand precise calculations, where even minor errors can lead to cascading failures. Furthermore, large language models (LLMs) encounter difficulties handling domain-specific formulas, executing reasoning steps accurately, and integrating code effectively when tackling chemical reasoning tasks. To address these challenges, we present ChemAgent, a novel framework designed to improve the performance of LLMs through a dynamic, self-updating library. This library is developed by decomposing chemical tasks into sub-tasks and compiling these sub-tasks into a structured collection that can be referenced for future queries. Then, when presented with a new problem, ChemAgent retrieves and refines pertinent information from the library, which we call memory, facilitating effective task decomposition and the generation of solutions. Our method designs three types of memory and a library-enhanced reasoning component, enabling LLMs to improve over time through experience. Experimental results on four chemical reasoning datasets from SciBench demonstrate that ChemAgent achieves performance gains of up to 46% (GPT-4), significantly outperforming existing methods. Our findings suggest substantial potential for future applications, including tasks such as drug discovery and materials science. Our code can be found at https://github.com/gersteinlab/chemagent

Key facts. Cited by 41 papers in the map (data through 7 Oct 2026). Placed in Clinical and biomedical applications, one of 17 directions in LLM reasoning. Builds on 45 of its 61 references that are in the map. First posted on arXiv 11 Jan 2025.

Builds on

45 of 61 references.

Closest ancestors · 1

Same direction, newest first

  1. 2023Structured Chemistry Reasoning with Large Language Models16 Nov

Other references · 44

  1. 2022Chain-of-Thought Prompting Elicits Reasoning in Large Language Modelscited by 12,302
  2. 2022Self-Consistency Improves Chain of Thought Reasoning in Language Modelscited by 5,601
  3. 2023Tree of Thoughts: Deliberate Problem Solving with Large Language Modelscited by 3,155
  4. 2022Learn to Explain: Multimodal Reasoning via Thought Chains for Science Question Answeringcited by 1,881
  5. 2016CLEVR: A Diagnostic Dataset for Compositional Language and Elementary Visual Reasoningcited by 1,445
  6. 2022Least-to-Most Prompting Enables Complex Reasoning in Large Language Modelscited by 1,397
  7. 2023Large Language Models Cannot Self-Correct Reasoning Yetcited by 965
  8. 2023Graph of Thoughts: Solving Elaborate Problems with Large Language Modelscited by 873
  9. 2023Large Language Models as Optimizerscited by 830
  10. 2023Large Language Modelscited by 774
  11. 2023CRITIC: Large Language Models Can Self-Correct with Tool-Interactive Critiquingcited by 751
  12. 2024A Survey on the Memory Mechanism of Large Language Model based Agentscited by 622
32 more
  1. 2022Decomposed Prompting: A Modular Approach for Solving Complex Taskscited by 554
  2. 2023MemoryBank: Enhancing Large Language Models with Long-Term Memorycited by 539
  3. 2023Promptbreeder: Self-Referential Self-Improvement Via Prompt Evolutioncited by 521
  4. 2024Understanding the planning of LLM agents: A surveycited by 414
  5. 2022Complexity-Based Prompting for Multi-Step Reasoningcited by 387
  6. 2024Automated Design of Agentic Systemscited by 360
  7. 2024Agent Workflow Memorycited by 342
  8. 2022RARR: Researching and Revising What Language Models Say, Using Language Modelscited by 286
  9. 2024TrustLLM: Trustworthiness in Large Language Modelscited by 280
  10. 2023SciBench: Evaluating College-Level Scientific Problem-Solving Abilities of Large Language Modelscited by 246
  11. 2023What can Large Language Models do in chemistry? A comprehensive benchmark on eight taskscited by 179
  12. 2024Recursive Introspection: Teaching Language Model Agents How to Self-Improvecited by 162
  13. 2023SciEval: A Multi-Level Large Language Model Evaluation Benchmark for Scientific Researchcited by 112
  14. 2024Symbolic Learning Enables Self-Evolving Agentscited by 104
  15. 2024Buffer of Thoughts: Thought-Augmented Reasoning with Large Language Modelscited by 91
  16. 2024Small Language Models Need Strong Verifiers to Self-Correct Reasoningcited by 85
  17. 2024ORGANA: A Robotic Assistant for Automated Chemistry Experimentation and Characterizationcited by 60
  18. 2023Language Models, Agent Models, and World Models: The LAW for Machine Reasoning and Planningcited by 59
  19. 2023SelfEvolve: A Code Evolution Framework via Large Language Modelscited by 43
  20. 2022Is a Question Decomposition Unit All We Need?cited by 37
  21. 2024SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literaturecited by 37
  22. 2024Investigate-Consolidate-Exploit: A General Strategy for Inter-Task Agent Self-Evolutioncited by 28
  23. 2023Empowering Working Memory for Large Language Model Agentscited by 18
  24. 2024ChemEval: A Comprehensive Multi-Level Chemical Evaluation for Large Language Modelscited by 18
  25. 2024Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Surveycited by 16
  26. 2024From Words to Molecules: A Survey of Large Language Models in Chemistrycited by 14
  27. 2024PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomescited by 14
  28. 2023Design of Chain-of-Thought in Math Problem Solvingcited by 12
  29. 2023Testing GPT-4 with Wolfram Alpha and Code Interpreter plug-ins on math and science problemscited by 11
  30. 2023ReactIE: Enhancing Chemical Reaction Extraction with Weak Supervisioncited by 7
  31. 2024Bridging Text and Molecule: A Survey on Multimodal Frameworks for Moleculecited by 4
  32. 2022When Do Decompositions Help for Machine Reading?cited by 2

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2025: 23; 2026: 18.

41 papers.

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  1. 2025Memory in the Age of AI Agentscited by 285
  2. 2025From LLM Reasoning to Autonomous AI Agents: A Comprehensive Reviewcited by 146
  3. 2025A Survey of Context Engineering for Large Language Modelscited by 120
  4. 2025G-Memory: Tracing Hierarchical Memory for Multi-Agent Systemscited by 112
  5. 2025MemEvolve: Meta-Evolution of Agent Memory Systemscited by 81
  6. 2025From AI for Science to Agentic Science: A Survey on Autonomous Scientific Discoverycited by 74
  7. 2025Injecting Domain-Specific Knowledge into Large Language Models: A Comprehensive Surveycited by 47
  8. 2026A Survey of Agentic Reasoning for Large Language Models: Towards Recursively Self-Improving and Collective Agentscited by 47
  9. 2025Beyond Chemical QA: Evaluating LLM's Chemical Reasoning with Modular Chemical Operationscited by 46
  10. 2025El Agente: An Autonomous Agent for Quantum Chemistrycited by 43
  11. 2025AgentDistill: Training-Free Agent Distillation with Generalizable MCP Boxescited by 28
  12. 2025CoMAS: Co-Evolving Multi-Agent Systems via Interaction Rewardscited by 27
29 more
  1. 2026TimeART: Towards Agentic Time Series Reasoning via Tool-Augmentationcited by 25
  2. 2025PharmAgents: Building a Virtual Pharma with Large Language Model Agentscited by 20
  3. 2026LongMemEval-V2: Evaluating Long-Term Agent Memory Toward Experienced Colleaguescited by 17
  4. 2025MIRA: Multimodal Iterative Reasoning Agent for Image Editingcited by 15
  5. 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
  6. 2025From What to Why: A Multi-Agent System for Evidence-based Chemical Reaction Condition Reasoningcited by 10
  7. 2026MementoGUI: Learning Agentic Multimodal Memory Control for Long-Horizon GUI Agentscited by 9
  8. 2025Automating Structural Engineering Workflows with Large Language Model Agentscited by 6
  9. 2025Experience-Evolving Multi-Turn Tool-Use Agent with Hybrid Episodic-Procedural Memorycited by 6
  10. 2026LatentChem: From Textual CoT to Latent Thinking in Chemical Reasoningcited by 6
  11. 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gapcited by 6
  12. 2026TritonDFT: Automating DFT with a Multi-Agent Frameworkcited by 5
  13. 2026AdaMEM: Test-Time Adaptive Memory for Language Agentscited by 4
  14. 2025AutoMat: Enabling Automated Crystal Structure Reconstruction from Microscopy via Agentic Tool Usecited by 3
  15. 2025Retro-Expert: Collaborative Reasoning for Interpretable Retrosynthesiscited by 3
  16. 2025ChemOrch: Empowering LLMs with Chemical Intelligence via Synthetic Instructionscited by 3
  17. 2026MolMem: Memory-Augmented Agentic Reinforcement Learning for Sample-Efficient Molecular Optimizationcited by 3
  18. 2025RefTool: Reference-Guided Tool Creation for Knowledge-Intensive Reasoningcited by 2
  19. 2025Empowering Real-World: A Survey on the Technology, Practice, and Evaluation of LLM-driven Industry Agentscited by 2
  20. 2026IntrAgent: An LLM Agent for Content-Grounded Information Retrieval through Literature Reviewcited by 2
  21. 2026ExpGraph: Model-Agnostic Experience Learning with Graph-Structured Memory for LLM Agentscited by 2
  22. 2025ChemAmp: Amplified Chemistry Tools via Composable Agentscited by 1
  23. 2026ST-EVO: Towards Generative Spatio-Temporal Evolution of Multi-Agent Communication Topologiescited by 1
  24. 2026An Alternative Trajectory for Generative AIcited by 1
  25. 2026MolQuest: A Benchmark for Agentic Evaluation of Abductive Reasoning in Chemical Structure Elucidationcited by 1
  26. 2026Rethinking Memory as Continuously Evolving Connectivitycited by 1
  27. 2026DKL: Decoupled Knowledge Learning for Instruction-Tuned Language Modelscited by 1
  28. 2026Agentic Molecular Recovery via Molecule-Aware Explorationcited by 0
  29. 2026TMCS: Tool-Grounded Multi-Agent Reasoning for Compositional Chemical Problem Solvingcited by 0

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  1. 2025ChemATP: A Training-Free Chemical Reasoning Framework for Large Language Models
  2. 2026ChemDIRT: A Diversified Instruction, Representation, and Task Benchmark for Robust Chemistry-LLM Evaluation
  3. 2026From Answers to States: Verifiable Process-Level Evaluation of Chemical Reasoning in Large Language Models
  4. 2025Training a Scientific Reasoning Model for Chemistry
  5. 2025Assessing the Chemical Intelligence of Large Language Models
  6. 2025MolErr2Fix: Benchmarking LLM Trustworthiness in Chemistry via Modular Error Detection, Localization, Explanation, and Revision
  7. 2025SUPERChem: A Multimodal Reasoning Benchmark in Chemistry
  8. 2025ChemAU: Harness the Reasoning of LLMs in Chemical Research with Adaptive Uncertainty Estimation