mlsanityData to 14 Oct 2026

TMCS: Tool-Grounded Multi-Agent Reasoning for Compositional Chemical Problem Solving

arXiv 2609.35336 ↗First posted 28 Sep 2026cs.AI cs.CVcited by 0

On the map: LLM reasoning → Reasoning for agents, planning and code

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Abstract (arXiv)

Despite the promise of Large Language Models (LLMs) in computational chemistry, rigorous combinatorial chemistry problems remain difficult because they require quantitatively constrained molecular modification, candidate validation, and systematic revision after failed attempts. Existing tool-augmented chemical agents demonstrate useful planning and tool use, but they rarely provide a unified loop for property-driven molecular optimization and workflow-level composition. To bridge this gap, we propose Tool-Grounded Multi-Agent Reasoning for Compositional Chemical Problem Solving (TMCS), a step-by-step multi-agent framework that formalizes chemical problem solving as an interpretable, tool-augmented workflow. At the task level, specialized agents leverage external tools, few-shot trajectory memory, and structured reflection to iteratively refine solutions. At the workflow level, TMCS chains generation, understanding, editing, description, and optimization into a closed-loop pipeline. Evaluations across multiple chemical tasks demonstrate that TMCS consistently enhances chemical reasoning across both open- and closed-source base models, achieving state-of-the-art performance.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Placed in Reasoning for agents, planning and code, one of 17 directions in LLM reasoning. Builds on 20 of its 34 references that are in the map. First posted on arXiv 28 Sep 2026.

Builds on

20 of 34 references.

References · 20

  1. 2024The Llama 3 Herd of Modelscited by 14,715
  2. 2024GPT-4o System Cardcited by 4,588
  3. 2025Gemini 2.5: Pushing the Frontier with Advanced Reasoning, Multimodality, Long Context, and Next Generation Agentic Capabilitiescited by 3,796
  4. 2025OpenAI GPT-5 System Cardcited by 989
  5. 2023ChemCrow: Augmenting large-language models with chemistry toolscited by 631
  6. 2020ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Predictioncited by 337
  7. 2024LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Datasetcited by 128
  8. 2022ChemBERTa-2: Towards Chemical Foundation Modelscited by 127
  9. 2024ChemLLM: A Chemical Large Language Modelcited by 106
  10. 2024LLM and Simulation as Bilevel Optimizers: A New Paradigm to Advance Physical Scientific Discoverycited by 86
  11. 2025Intern-S1: A Scientific Multimodal Foundation Modelcited by 53
  12. 2024DrugAgent: Automating AI-aided Drug Discovery Programming through LLM Multi-Agent Collaborationcited by 44
8 more
  1. 2025ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoningcited by 41
  2. 2025Nature Language Model: Deciphering the Language of Nature for Scientific Discoverycited by 36
  3. 2022A Systematic Survey of Chemical Pre-trained Modelscited by 34
  4. 2025ChemMLLM: Chemical Multimodal Large Language Modelcited by 17
  5. 2025Chem-R: Learning to Reason as a Chemistcited by 17
  6. 2025Chem3DLLM: 3D Multimodal Large Language Models for Chemistrycited by 7
  7. 2024Navigating Chemical-Linguistic Sharing Space with Heterogeneous Molecular Encodingcited by 6
  8. 2026Agentic reinforcement learning empowers next-generation chemical language models for molecular design and synthesiscited by 6

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  1. 2025MT-Mol:Multi Agent System with Tool-based Reasoning for Molecular Optimization
  2. 2025Beyond Chemical QA: Evaluating LLM's Chemical Reasoning with Modular Chemical Operations
  3. 2026Masked Diffusion Language Agents for Tool-Integrated Chemical Reasoning
  4. 2025Chemical reasoning in LLMs unlocks strategy-aware synthesis planning and reaction mechanism elucidation
  5. 2025ChemAmp: Amplified Chemistry Tools via Composable Agents
  6. 2026From Answers to States: Verifiable Process-Level Evaluation of Chemical Reasoning in Large Language Models
  7. 2026M3OS: A Monte Carlo Graph Search-Orchestrated Multi-Agent LLM System for Evidence-Traced Molecular Optimization
  8. 2026ARMOR: An Agentic Framework for Reaction Feasibility Prediction via Adaptive Utility-aware Multi-tool Reasoning