Deep Neural Networks and Brain Alignment: Brain Encoding and Decoding (Survey)
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Abstract (arXiv)
Can artificial intelligence unlock the secrets of the human brain? How do the inner mechanisms of deep learning models relate to our neural circuits? Is it possible to enhance AI by tapping into the power of brain recordings? These captivating questions lie at the heart of an emerging field at the intersection of neuroscience and artificial intelligence. Our survey dives into this exciting domain, focusing on human brain recording studies and cutting-edge cognitive neuroscience datasets that capture brain activity during natural language processing, visual perception, and auditory experiences. We explore two fundamental approaches: encoding models, which attempt to generate brain activity patterns from sensory inputs; and decoding models, which aim to reconstruct our thoughts and perceptions from neural signals. These techniques not only promise breakthroughs in neurological diagnostics and brain-computer interfaces but also offer a window into the very nature of cognition. In this survey, we first discuss popular representations of language, vision, and speech stimuli, and present a summary of neuroscience datasets. We then review how the recent advances in deep learning transformed this field, by investigating the popular deep learning based encoding and decoding architectures, noting their benefits and limitations across different sensory modalities. From text to images, speech to videos, we investigate how these models capture the brain's response to our complex, multimodal world. While our primary focus is on human studies, we also highlight the crucial role of animal models in advancing our understanding of neural mechanisms. Throughout, we mention the ethical implications of these powerful technologies, addressing concerns about privacy and cognitive liberty. We conclude with a summary and discussion of future trends in this rapidly evolving field.
Key facts. Cited by 20 papers in the map (data through 7 Oct 2026). Builds on 85 of its 229 references that are in the map. First posted on arXiv 17 Jul 2023.
Builds on
85 of 229 references.
References · 85
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50 most cited of 85 All 85 (JSON)
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Citing papers per year: 2023: 3; 2024: 3; 2025: 7; 2026: 7.
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- 2023Instruction-tuning Aligns LLMs to the Human Braincited by 39
- 2023Through their eyes: multi-subject Brain Decoding with simple alignment techniquescited by 21
- 2023A Framework for Interpretability in Machine Learning for Medical Imagingcited by 9
- 2024Towards Neural Foundation Models for Vision: Aligning EEG, MEG, and fMRI Representations for Decoding, Encoding, and Modality Conversioncited by 9
- 2025Multi-modal brain encoding models for multi-modal stimulicited by 8
- 2025A Survey on fMRI-based Brain Decoding for Reconstructing Multimodal Stimulicited by 6
- 2025Correlating instruction-tuning (in multimodal models) with vision-language processing (in the brain)cited by 4
- 2025Language models align with brain regions that represent concepts across modalitiescited by 4
- 2025Brain-Language Model Alignment: Insights into the Platonic Hypothesis and Intermediate-Layer Advantagecited by 4
- 2026HyFI: Hyperbolic Feature Interpolation for Brain-Vision Alignmentcited by 4
- 2024How Many Bytes Can You Take Out Of Brain-To-Text Decoding?cited by 2
- 2024Can Transformers Smell Like Humans?cited by 2
8 more
- 2025Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report)cited by 1
- 2026EEG2Vision: A Multimodal EEG-Based Framework for 2D Visual Reconstruction in Cognitive Neurosciencecited by 1
- 2025Toward a Realistic Encoding Model of Auditory Affective Understanding in the Braincited by 0
- 2026Simple Models, Rich Representations: Visual Decoding from Primate Intracortical Neural Signalscited by 0
- 2026Linguistic properties and model scale in brain encoding: from small to compressed language modelscited by 0
- 2026How does longer temporal context enhance multimodal narrative video processing in the brain?cited by 0
- 2026Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activitycited by 0
- 2026Coarse-to-fine Hierarchical Architecture with Sequential Mamba for Brain Reconstructioncited by 0
- 2026Coarse-to-fine Hierarchical Architecture with Sequential Mamba for Brain Reconstruction3 Jun 2026
- 2026EEG2Vision: A Multimodal EEG-Based Framework for 2D Visual Reconstruction in Cognitive Neuroscience9 Apr 2026
- 2026HyFI: Hyperbolic Feature Interpolation for Brain-Vision Alignment24 Mar 2026
- 2026Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity3 Mar 2026
- 2026How does longer temporal context enhance multimodal narrative video processing in the brain?7 Feb 2026
- 2026Linguistic properties and model scale in brain encoding: from small to compressed language models7 Feb 2026
- 2026Simple Models, Rich Representations: Visual Decoding from Primate Intracortical Neural Signals16 Jan 2026
- 2025Brain-Language Model Alignment: Insights into the Platonic Hypothesis and Intermediate-Layer Advantage3 Oct 2025
- 2025Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report)2 Oct 2025
- 2025Toward a Realistic Encoding Model of Auditory Affective Understanding in the Brain23 Sep 2025
- 2025Language models align with brain regions that represent concepts across modalities15 Aug 2025
- 2025Correlating instruction-tuning (in multimodal models) with vision-language processing (in the brain)26 May 2025
8 more
- 2025Multi-modal brain encoding models for multi-modal stimuli26 May 2025
- 2025A Survey on fMRI-based Brain Decoding for Reconstructing Multimodal Stimuli20 Mar 2025
- 2024Towards Neural Foundation Models for Vision: Aligning EEG, MEG, and fMRI Representations for Decoding, Encoding, and Modality Conversion14 Nov 2024
- 2024Can Transformers Smell Like Humans?5 Nov 2024
- 2024How Many Bytes Can You Take Out Of Brain-To-Text Decoding?22 May 2024
- 2023Instruction-tuning Aligns LLMs to the Human Brain1 Dec 2023
- 2023A Framework for Interpretability in Machine Learning for Medical Imaging2 Oct 2023
- 2023Through their eyes: multi-subject Brain Decoding with simple alignment techniques1 Aug 2023
- 2023Instruction-tuning Aligns LLMs to the Human Braincited by 39
- 2023Through their eyes: multi-subject Brain Decoding with simple alignment techniquescited by 21
- 2023A Framework for Interpretability in Machine Learning for Medical Imagingcited by 9
- 2024Towards Neural Foundation Models for Vision: Aligning EEG, MEG, and fMRI Representations for Decoding, Encoding, and Modality Conversioncited by 9
- 2025Multi-modal brain encoding models for multi-modal stimulicited by 8
- 2025A Survey on fMRI-based Brain Decoding for Reconstructing Multimodal Stimulicited by 6
- 2025Correlating instruction-tuning (in multimodal models) with vision-language processing (in the brain)cited by 4
- 2025Language models align with brain regions that represent concepts across modalitiescited by 4
- 2026HyFI: Hyperbolic Feature Interpolation for Brain-Vision Alignmentcited by 4
- 2024How Many Bytes Can You Take Out Of Brain-To-Text Decoding?cited by 2
- 2024Can Transformers Smell Like Humans?cited by 2
- 2025Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report)cited by 1
12 most cited of 18 All 18 (JSON)
- 2026EEG2Vision: A Multimodal EEG-Based Framework for 2D Visual Reconstruction in Cognitive Neuroscience9 Apr 2026
- 2026HyFI: Hyperbolic Feature Interpolation for Brain-Vision Alignment24 Mar 2026
- 2026Expectation and Acoustic Neural Network Representations Enhance Music Identification from Brain Activity3 Mar 2026
- 2026How does longer temporal context enhance multimodal narrative video processing in the brain?7 Feb 2026
- 2026Linguistic properties and model scale in brain encoding: from small to compressed language models7 Feb 2026
- 2026Simple Models, Rich Representations: Visual Decoding from Primate Intracortical Neural Signals16 Jan 2026
- 2025Stacked Regression using Off-the-shelf, Stimulus-tuned and Fine-tuned Neural Networks for Predicting fMRI Brain Responses to Movies (Algonauts 2025 Report)2 Oct 2025
- 2025Toward a Realistic Encoding Model of Auditory Affective Understanding in the Brain23 Sep 2025
- 2025Language models align with brain regions that represent concepts across modalities15 Aug 2025
- 2025Correlating instruction-tuning (in multimodal models) with vision-language processing (in the brain)26 May 2025
- 2025Multi-modal brain encoding models for multi-modal stimuli26 May 2025
- 2025A Survey on fMRI-based Brain Decoding for Reconstructing Multimodal Stimuli20 Mar 2025
12 newest of 18 All 18 (JSON)