Machine learning for neural decoding
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Abstract (arXiv)
Despite rapid advances in machine learning tools, the majority of neural decoding approaches still use traditional methods. Modern machine learning tools, which are versatile and easy to use, have the potential to significantly improve decoding performance. This tutorial describes how to effectively apply these algorithms for typical decoding problems. We provide descriptions, best practices, and code for applying common machine learning methods, including neural networks and gradient boosting. We also provide detailed comparisons of the performance of various methods at the task of decoding spiking activity in motor cortex, somatosensory cortex, and hippocampus. Modern methods, particularly neural networks and ensembles, significantly outperform traditional approaches, such as Wiener and Kalman filters. Improving the performance of neural decoding algorithms allows neuroscientists to better understand the information contained in a neural population and can help advance engineering applications such as brain machine interfaces.
Key facts. Cited by 45 papers in the map (data through 7 Oct 2026). First posted on arXiv 2 Aug 2017.
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Citing papers per year: 2021: 3; 2022: 8; 2023: 9; 2024: 4; 2025: 11; 2026: 10.
45 papers.
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- 2023A Unified, Scalable Framework for Neural Population Decodingcited by 59
- 2021Neural Latents Benchmark '21: Evaluating latent variable models of neural population activitycited by 57
- 2023Deep Neural Networks and Brain Alignment: Brain Encoding and Decoding (Survey)cited by 20
- 2024Neural decoding from stereotactic EEG: accounting for electrode variability across subjectscited by 17
- 2025Neural Encoding and Decoding at Scalecited by 17
- 2022An Energy-Efficient Spiking Neural Network for Finger Velocity Decoding for Implantable Brain-Machine Interfacecited by 8
- 2025Generalizable, real-time neural decoding with hybrid state-space modelscited by 8
- 2022A Topological Deep Learning Framework for Neural Spike Decodingcited by 6
- 2022Challenges and Opportunities of Edge AI for Next-Generation Implantable BMIscited by 5
- 2025The Alpha-Alternator: Dynamic Adaptation To Varying Noise Levels In Sequences Using The Vendi Score For Improved Robustness and Performancecited by 5
- 2025Embracing Trustworthy Brain-Agent Collaboration as Paradigm Extension for Intelligent Assistive Technologiescited by 5
- 2025LLMs Help Alleviate the Cross-Subject Variability in Brain Signal and Language Alignmentcited by 4
33 more
- 2023Combining SNNs with Filtering for Efficient Neural Decoding in Implantable Brain-Machine Interfacescited by 3
- 2024Alternators For Sequence Modelingcited by 3
- 2024Neuropsychology of AI: Relationship Between Activation Proximity and Categorical Proximity Within Neural Categories of Synthetic Cognitioncited by 3
- 2022Compressed Predictive Information Codingcited by 2
- 2022A Spiking Neural Network based on Neural Manifold for Augmenting Intracortical Brain-Computer Interface Datacited by 2
- 2022Repairing Brain-Computer Interfaces with Fault-Based Data Acquisitioncited by 1
- 2023Can We Use Probing to Better Understand Fine-tuning and Knowledge Distillation of the BERT NLU?cited by 1
- 2023Inferring Population Dynamics in Macaque Cortexcited by 1
- 2024Conditionally-Conjugate Gaussian Process Factor Analysis for Spike Count Data via Data Augmentationcited by 1
- 2026Leveraging unlabelled data for generalizable neural population decodingcited by 1
- 2021Overcoming the Domain Gap in Contrastive Learning of Neural Action Representationscited by 0
- 2021Overcoming the Domain Gap in Neural Action Representationscited by 0
- 2022Deep Direct Discriminative Decoders for High-dimensional Time-series Data Analysiscited by 0
- 2022Integrating Statistical and Machine Learning Approaches to Identify Receptive Field Structure in Neural Populationscited by 0
- 2023Tree-Based Learning on Amperometric Time Series Data Demonstrates High Accuracy for Classificationcited by 0
- 2023A Deep-Learning-Based Neural Decoding Framework for Emotional Brain-Computer Interfacescited by 0
- 2023Latent Dynamical Implicit Diffusion Processescited by 0
- 2023Deep Learning for real-time neural decoding of graspcited by 0
- 2025An Algorithm Board in Neural Decodingcited by 0
- 2025Intra-neuronal attention within language models Relationships between activation and semanticscited by 0
- 2025Polysemy of Synthetic Neurons Towards a New Type of Explanatory Categorical Vector Spacescited by 0
- 2025BiND: A Neural Discriminator-Decoder for Accurate Bimanual Trajectory Prediction in Brain-Computer Interfacescited by 0
- 2025VoxelFormer: Parameter-Efficient Multi-Subject Visual Decoding from fMRIcited by 0
- 2025A Scalable, Causal, and Energy Efficient Framework for Neural Decoding with Spiking Neural Networkscited by 0
- 2026RPNT: Robust Pre-trained Neural Transformer -- A Pathway for Generalized Motor Decodingcited by 0
- 2026CalM: A Self-Supervised Foundation Model for Population Dynamics in Calcium Imaging Datacited by 0
- 2026Inverting Foundation Models of Brain Function with Simulation-Based Inferencecited by 0
- 2026Nonlocal operator learning for fMRI encoding and decoding taskscited by 0
- 2026Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learningcited by 0
- 2026NeuroPB: Scaling Neural Decoding with Pretrained Behavioral Representationscited by 0
- 2026Brain-Conditioned Action Policies for Neural Motor Decodingcited by 0
- 2026From Neurons to Conversation: Speech Brain-Computer Interfacescited by 0
- 2026Association profile conditioning in a set-temporal transformer for cross-session intracortical motor decodingcited by 0
- 2026Association profile conditioning in a set-temporal transformer for cross-session intracortical motor decoding30 Sep 2026
- 2026From Neurons to Conversation: Speech Brain-Computer Interfaces29 Sep 2026
- 2026Brain-Conditioned Action Policies for Neural Motor Decoding28 Sep 2026
- 2026NeuroPB: Scaling Neural Decoding with Pretrained Behavioral Representations5 Aug 2026
- 2026Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learning21 Jul 2026
- 2026Leveraging unlabelled data for generalizable neural population decoding15 Jul 2026
- 2026Nonlocal operator learning for fMRI encoding and decoding tasks19 May 2026
- 2026Inverting Foundation Models of Brain Function with Simulation-Based Inference26 Apr 2026
- 2026CalM: A Self-Supervised Foundation Model for Population Dynamics in Calcium Imaging Data3 Apr 2026
- 2026RPNT: Robust Pre-trained Neural Transformer -- A Pathway for Generalized Motor Decoding25 Jan 2026
- 2025Embracing Trustworthy Brain-Agent Collaboration as Paradigm Extension for Intelligent Assistive Technologies25 Oct 2025
- 2025A Scalable, Causal, and Energy Efficient Framework for Neural Decoding with Spiking Neural Networks23 Oct 2025
33 more
- 2025VoxelFormer: Parameter-Efficient Multi-Subject Visual Decoding from fMRI10 Sep 2025
- 2025BiND: A Neural Discriminator-Decoder for Accurate Bimanual Trajectory Prediction in Brain-Computer Interfaces19 Aug 2025
- 2025Generalizable, real-time neural decoding with hybrid state-space models5 Jun 2025
- 2025Polysemy of Synthetic Neurons Towards a New Type of Explanatory Categorical Vector Spaces30 Apr 2025
- 2025Neural Encoding and Decoding at Scale11 Apr 2025
- 2025Intra-neuronal attention within language models Relationships between activation and semantics17 Mar 2025
- 2025An Algorithm Board in Neural Decoding18 Feb 2025
- 2025The Alpha-Alternator: Dynamic Adaptation To Varying Noise Levels In Sequences Using The Vendi Score For Improved Robustness and Performance7 Feb 2025
- 2025LLMs Help Alleviate the Cross-Subject Variability in Brain Signal and Language Alignment5 Jan 2025
- 2024Neural decoding from stereotactic EEG: accounting for electrode variability across subjects1 Nov 2024
- 2024Neuropsychology of AI: Relationship Between Activation Proximity and Categorical Proximity Within Neural Categories of Synthetic Cognition8 Oct 2024
- 2024Alternators For Sequence Modeling20 May 2024
- 2024Conditionally-Conjugate Gaussian Process Factor Analysis for Spike Count Data via Data Augmentation19 May 2024
- 2023Combining SNNs with Filtering for Efficient Neural Decoding in Implantable Brain-Machine Interfaces26 Dec 2023
- 2023Deep Learning for real-time neural decoding of grasp2 Nov 2023
- 2023A Unified, Scalable Framework for Neural Population Decoding24 Oct 2023
- 2023Deep Neural Networks and Brain Alignment: Brain Encoding and Decoding (Survey)17 Jul 2023
- 2023Latent Dynamical Implicit Diffusion Processes12 Jun 2023
- 2023Inferring Population Dynamics in Macaque Cortex5 Apr 2023
- 2023A Deep-Learning-Based Neural Decoding Framework for Emotional Brain-Computer Interfaces8 Mar 2023
- 2023Tree-Based Learning on Amperometric Time Series Data Demonstrates High Accuracy for Classification6 Feb 2023
- 2023Can We Use Probing to Better Understand Fine-tuning and Knowledge Distillation of the BERT NLU?27 Jan 2023
- 2022A Topological Deep Learning Framework for Neural Spike Decoding1 Dec 2022
- 2022An Energy-Efficient Spiking Neural Network for Finger Velocity Decoding for Implantable Brain-Machine Interface7 Oct 2022
- 2022Integrating Statistical and Machine Learning Approaches to Identify Receptive Field Structure in Neural Populations25 Jul 2022
- 2022Deep Direct Discriminative Decoders for High-dimensional Time-series Data Analysis22 May 2022
- 2022Challenges and Opportunities of Edge AI for Next-Generation Implantable BMIs4 Apr 2022
- 2022A Spiking Neural Network based on Neural Manifold for Augmenting Intracortical Brain-Computer Interface Data26 Mar 2022
- 2022Repairing Brain-Computer Interfaces with Fault-Based Data Acquisition20 Mar 2022
- 2022Compressed Predictive Information Coding3 Mar 2022
- 2021Overcoming the Domain Gap in Neural Action Representations2 Dec 2021
- 2021Overcoming the Domain Gap in Contrastive Learning of Neural Action Representations29 Nov 2021
- 2021Neural Latents Benchmark '21: Evaluating latent variable models of neural population activity9 Sep 2021
- 2023Latent Dynamical Implicit Diffusion Processescited by 0
- 2023Latent Dynamical Implicit Diffusion Processes12 Jun 2023
- 2026Brain-Conditioned Action Policies for Neural Motor Decoding28 Sep 2026
- 2023A Unified, Scalable Framework for Neural Population Decodingcited by 59
- 2021Neural Latents Benchmark '21: Evaluating latent variable models of neural population activitycited by 57
- 2023Deep Neural Networks and Brain Alignment: Brain Encoding and Decoding (Survey)cited by 20
- 2024Neural decoding from stereotactic EEG: accounting for electrode variability across subjectscited by 17
- 2025Neural Encoding and Decoding at Scalecited by 17
- 2022An Energy-Efficient Spiking Neural Network for Finger Velocity Decoding for Implantable Brain-Machine Interfacecited by 8
- 2025Generalizable, real-time neural decoding with hybrid state-space modelscited by 8
- 2022A Topological Deep Learning Framework for Neural Spike Decodingcited by 6
- 2022Challenges and Opportunities of Edge AI for Next-Generation Implantable BMIscited by 5
- 2025LLMs Help Alleviate the Cross-Subject Variability in Brain Signal and Language Alignmentcited by 4
- 2023Combining SNNs with Filtering for Efficient Neural Decoding in Implantable Brain-Machine Interfacescited by 3
- 2024Alternators For Sequence Modelingcited by 3
12 most cited of 40 All 40 (JSON)
- 2026Association profile conditioning in a set-temporal transformer for cross-session intracortical motor decoding30 Sep 2026
- 2026From Neurons to Conversation: Speech Brain-Computer Interfaces29 Sep 2026
- 2026NeuroPB: Scaling Neural Decoding with Pretrained Behavioral Representations5 Aug 2026
- 2026Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learning21 Jul 2026
- 2026Leveraging unlabelled data for generalizable neural population decoding15 Jul 2026
- 2026Nonlocal operator learning for fMRI encoding and decoding tasks19 May 2026
- 2026Inverting Foundation Models of Brain Function with Simulation-Based Inference26 Apr 2026
- 2026CalM: A Self-Supervised Foundation Model for Population Dynamics in Calcium Imaging Data3 Apr 2026
- 2026RPNT: Robust Pre-trained Neural Transformer -- A Pathway for Generalized Motor Decoding25 Jan 2026
- 2025A Scalable, Causal, and Energy Efficient Framework for Neural Decoding with Spiking Neural Networks23 Oct 2025
- 2025BiND: A Neural Discriminator-Decoder for Accurate Bimanual Trajectory Prediction in Brain-Computer Interfaces19 Aug 2025
- 2025Generalizable, real-time neural decoding with hybrid state-space models5 Jun 2025
12 newest of 40 All 40 (JSON)