Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Prediction
On the map: Diffusion models → Flow matching, time series and science
Abstract (arXiv)
Graph diffusion models have made significant progress in learning structured graph data and have demonstrated strong potential for predictive tasks. Existing approaches typically embed node, edge, and graph-level features into a unified latent space, modeling prediction tasks including classification and regression as a form of conditional generation. However, due to the non-Euclidean nature of graph data, features of different curvatures are entangled in the same latent space without releasing their geometric potential. To address this issue, we aim to construt an ideal Riemannian diffusion model to capture distinct manifold signatures of complex graph data and learn their distribution. This goal faces two challenges: numerical instability caused by exponential mapping during the encoding proces and manifold deviation during diffusion generation. To address these challenges, we propose GeoMancer: a novel Riemannian graph diffusion framework for both generation and prediction tasks. To mitigate numerical instability, we replace exponential mapping with an isometric-invariant Riemannian gyrokernel approach and decouple multi-level features onto their respective task-specific manifolds to learn optimal representations. To address manifold deviation, we introduce a manifold-constrained diffusion method and a self-guided strategy for unconditional generation, ensuring that the generated data remains aligned with the manifold signature. Extensive experiments validate the effectiveness of our approach, demonstrating superior performance across a variety of tasks.
Key facts. Cited by 1 paper in the map (data through 7 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 49 of its 62 references that are in the map. First posted on arXiv 6 Oct 2025.
Builds on
49 of 62 references.
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Other references · 40
- 2020Denoising Diffusion Probabilistic Modelscited by 20,851
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
- 2017Graph Attention Networkscited by 8,854
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- 2018How Powerful are Graph Neural Networks?cited by 4,355
- 2021Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gaugescited by 1,131
- 2018Pitfalls of Graph Neural Network Evaluationcited by 994
- 2022Recipe for a General, Powerful, Scalable Graph Transformercited by 702
- 2019GraphSAINT: Graph Sampling Based Inductive Learning Methodcited by 618
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- 2020GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generationcited by 301
- 2020Can Graph Neural Networks Count Substructures?cited by 235
- 2021Weisfeiler and Lehman Go Cellular: CW Networkscited by 218
- 2018Fr'echet ChemNet Distance: A metric for generative models for molecules in drug discoverycited by 191
- 2020MoFlow: An Invertible Flow Model for Generating Molecular Graphscited by 183
- 2021GraphDF: A Discrete Flow Model for Molecular Graph Generationcited by 177
- 2023Exphormer: Sparse Transformers for Graphscited by 166
- 2021From Stars to Subgraphs: Uplifting Any GNN with Local Structure Awarenesscited by 154
- 2023Graph Inductive Biases in Transformers without Message Passingcited by 150
- 2024CFG++: Manifold-constrained Classifier Free Guidance for Diffusion Modelscited by 138
- 2022NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphscited by 137
- 2022How Powerful are K-hop Message Passing Graph Neural Networkscited by 90
- 2017Neural Embeddings of Graphs in Hyperbolic Spacecited by 58
- 2022Ordered Subgraph Aggregation Networkscited by 57
- 2023Graph Generation with Diffusion Mixturecited by 52
- 2022Latent Graph Inference using Product Manifoldscited by 23
- 2024Motif-aware Riemannian Graph Neural Network with Generative-Contrastive Learningcited by 23
- 2024GraphMoRE: Mitigating Topological Heterogeneity via Mixture of Riemannian Expertscited by 23
- 2023Neural Latent Geometry Search: Product Manifold Inference via Gromov-Hausdorff-Informed Bayesian Optimizationcited by 18
- 2020Product Manifold Learningcited by 16
- 2025Top Ten Challenges Towards Agentic Neural Graph Databasescited by 13
- 2022Random Laplacian Features for Learning with Hyperbolic Spacecited by 8
- 2022Realistic Synthetic Social Networks with Graph Neural Networkscited by 5
- 2025Galaxy Walker: Geometry-aware VLMs For Galaxy-scale Understandingcited by 4
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Citing papers per year: 2026: 1.
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