mlsanityData to 7 Oct 2026

Toward a Unified Geometry Understanding: Riemannian Diffusion Framework for Graph Generation and Prediction

arXiv 2510.04522 ↗First posted 6 Oct 2025cs.LG cs.AIcited by 1

On the map: Diffusion models → Flow matching, time series and science

Abstract (arXiv)

Graph diffusion models have made significant progress in learning structured graph data and have demonstrated strong potential for predictive tasks. Existing approaches typically embed node, edge, and graph-level features into a unified latent space, modeling prediction tasks including classification and regression as a form of conditional generation. However, due to the non-Euclidean nature of graph data, features of different curvatures are entangled in the same latent space without releasing their geometric potential. To address this issue, we aim to construt an ideal Riemannian diffusion model to capture distinct manifold signatures of complex graph data and learn their distribution. This goal faces two challenges: numerical instability caused by exponential mapping during the encoding proces and manifold deviation during diffusion generation. To address these challenges, we propose GeoMancer: a novel Riemannian graph diffusion framework for both generation and prediction tasks. To mitigate numerical instability, we replace exponential mapping with an isometric-invariant Riemannian gyrokernel approach and decouple multi-level features onto their respective task-specific manifolds to learn optimal representations. To address manifold deviation, we introduce a manifold-constrained diffusion method and a self-guided strategy for unconditional generation, ensuring that the generated data remains aligned with the manifold signature. Extensive experiments validate the effectiveness of our approach, demonstrating superior performance across a variety of tasks.

Key facts. Cited by 1 paper in the map (data through 7 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 49 of its 62 references that are in the map. First posted on arXiv 6 Oct 2025.

Builds on

49 of 62 references.

Closest ancestors · 9

Same direction, newest first

  1. 2024DeFoG: Discrete Flow Matching for Graph Generation5 Oct
  2. 2024Hyperbolic Geometric Latent Diffusion Model for Graph Generation6 May
  3. 2024Unifying Generation and Prediction on Graphs with Latent Graph Diffusion4 Feb
  4. 2023Directional diffusion models for graph representation learning22 Jun
  5. 2023Geometric Latent Diffusion Models for 3D Molecule Generation2 May
  6. 2022Fast Graph Generation via Spectral Diffusion16 Nov
  7. 2022DiGress: Discrete Denoising diffusion for graph generation29 Sep
  8. 2022Equivariant Diffusion for Molecule Generation in 3D31 Mar
  9. 2022Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equations5 Feb

Other references · 40

  1. 2020Denoising Diffusion Probabilistic Modelscited by 20,851
  2. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,282
  3. 2017Graph Attention Networkscited by 8,854
  4. 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,185
  5. 2022Classifier-Free Diffusion Guidancecited by 5,717
  6. 2018How Powerful are Graph Neural Networks?cited by 4,355
  7. 2021Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gaugescited by 1,131
  8. 2018Pitfalls of Graph Neural Network Evaluationcited by 994
  9. 2022Recipe for a General, Powerful, Scalable Graph Transformercited by 702
  10. 2019GraphSAINT: Graph Sampling Based Inductive Learning Methodcited by 618
  11. 2022Improving Diffusion Models for Inverse Problems using Manifold Constraintscited by 501
  12. 2020Graph Neural Networks in Recommender Systems: A Surveycited by 493
28 more
  1. 2020Principal Neighbourhood Aggregation for Graph Netscited by 477
  2. 2021Rethinking Graph Transformers with Spectral Attentioncited by 468
  3. 2019Hyperbolic Graph Convolutional Neural Networkscited by 400
  4. 2022DiffDock: Diffusion Steps, Twists, and Turns for Molecular Dockingcited by 307
  5. 2020GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generationcited by 301
  6. 2020Can Graph Neural Networks Count Substructures?cited by 235
  7. 2021Weisfeiler and Lehman Go Cellular: CW Networkscited by 218
  8. 2018Fr'echet ChemNet Distance: A metric for generative models for molecules in drug discoverycited by 191
  9. 2020MoFlow: An Invertible Flow Model for Generating Molecular Graphscited by 183
  10. 2021GraphDF: A Discrete Flow Model for Molecular Graph Generationcited by 177
  11. 2023Exphormer: Sparse Transformers for Graphscited by 166
  12. 2021From Stars to Subgraphs: Uplifting Any GNN with Local Structure Awarenesscited by 154
  13. 2023Graph Inductive Biases in Transformers without Message Passingcited by 150
  14. 2024CFG++: Manifold-constrained Classifier Free Guidance for Diffusion Modelscited by 138
  15. 2022NAGphormer: A Tokenized Graph Transformer for Node Classification in Large Graphscited by 137
  16. 2022How Powerful are K-hop Message Passing Graph Neural Networkscited by 90
  17. 2017Neural Embeddings of Graphs in Hyperbolic Spacecited by 58
  18. 2022Ordered Subgraph Aggregation Networkscited by 57
  19. 2023Graph Generation with Diffusion Mixturecited by 52
  20. 2022Latent Graph Inference using Product Manifoldscited by 23
  21. 2024Motif-aware Riemannian Graph Neural Network with Generative-Contrastive Learningcited by 23
  22. 2024GraphMoRE: Mitigating Topological Heterogeneity via Mixture of Riemannian Expertscited by 23
  23. 2023Neural Latent Geometry Search: Product Manifold Inference via Gromov-Hausdorff-Informed Bayesian Optimizationcited by 18
  24. 2020Product Manifold Learningcited by 16
  25. 2025Top Ten Challenges Towards Agentic Neural Graph Databasescited by 13
  26. 2022Random Laplacian Features for Learning with Hyperbolic Spacecited by 8
  27. 2022Realistic Synthetic Social Networks with Graph Neural Networkscited by 5
  28. 2025Galaxy Walker: Geometry-aware VLMs For Galaxy-scale Understandingcited by 4

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2026: 1.

1 paper.

Similar, not cited

Close in wording, no citation either way

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  2. 2025What's Inside Your Diffusion Model? A Score-Based Riemannian Metric to Explore the Data Manifold
  3. 2026Graph Representation via Elements of Discrete Morse and Cobordism Theories
  4. 2023Generative Modeling on Manifolds Through Mixture of Riemannian Diffusion Processes
  5. 2025Be Tangential to Manifold: Discovering Riemannian Metric for Diffusion Models
  6. 2025Graph Generation with Spectral Geodesic Flow Matching
  7. 2026Learning on the Manifold: Unlocking Standard Diffusion Transformers with Representation Encoders
  8. 2023Manifold Diffusion Fields