mlsanityData to 7 Oct 2026

Unifying Molecular and Textual Representations via Multi-task Language Modelling

arXiv 2301.12586 ↗First posted 29 Jan 2023cs.LG cs.CLcited by 92

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Abstract (arXiv)

The recent advances in neural language models have also been successfully applied to the field of chemistry, offering generative solutions for classical problems in molecular design and synthesis planning. These new methods have the potential to fuel a new era of data-driven automation in scientific discovery. However, specialized models are still typically required for each task, leading to the need for problem-specific fine-tuning and neglecting task interrelations. The main obstacle in this field is the lack of a unified representation between natural language and chemical representations, complicating and limiting human-machine interaction. Here, we propose the first multi-domain, multi-task language model that can solve a wide range of tasks in both the chemical and natural language domains. Our model can handle chemical and natural language concurrently, without requiring expensive pre-training on single domains or task-specific models. Interestingly, sharing weights across domains remarkably improves our model when benchmarked against state-of-the-art baselines on single-domain and cross-domain tasks. In particular, sharing information across domains and tasks gives rise to large improvements in cross-domain tasks, the magnitude of which increase with scale, as measured by more than a dozen of relevant metrics. Our work suggests that such models can robustly and efficiently accelerate discovery in physical sciences by superseding problem-specific fine-tuning and enhancing human-model interactions.

Key facts. Cited by 92 papers in the map (data through 7 Oct 2026). Builds on 26 of its 62 references that are in the map. First posted on arXiv 29 Jan 2023.

Builds on

26 of 62 references.

References · 26

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14 more
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Cited by year (2026 to 7 Oct)

Citing papers per year: 2023: 12; 2024: 41; 2025: 27; 2026: 12.

92 papers.

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  1. 2023ChemCrow: Augmenting large-language models with chemistry toolscited by 609
  2. 2023Large Language Models on Graphs: A Comprehensive Surveycited by 190
  3. 2023Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Modelscited by 131
  4. 2023MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adaptercited by 128
  5. 2024A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discoverycited by 96
  6. 2024A Review of Large Language Models and Autonomous Agents in Chemistrycited by 96
  7. 2023InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discoverycited by 86
  8. 2024Scientific Large Language Models: A Survey on Biological & Chemical Domainscited by 80
  9. 2024Efficient Evolutionary Search Over Chemical Space with Large Language Modelscited by 59
  10. 2024BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuningcited by 54
  11. 2024Developing ChemDFM as a large language foundation model for chemistrycited by 51
  12. 2024A Sober Look at LLMs for Material Discovery: Are They Actually Good for Bayesian Optimization Over Molecules?cited by 46
38 more
  1. 2024ChemReasoner: Heuristic Search over a Large Language Model's Knowledge Space using Quantum-Chemical Feedbackcited by 32
  2. 2024MolecularGPT: Open Large Language Model (LLM) for Few-Shot Molecular Property Predictioncited by 24
  3. 2024MolTC: Towards Molecular Relational Modeling In Language Modelscited by 22
  4. 2024LLaMo: Large Language Model-based Molecular Graph Assistantcited by 22
  5. 2024L+M-24: Building a Dataset for Language + Molecules @ ACL 2024cited by 21
  6. 2024MoleculeQA: A Dataset to Evaluate Factual Accuracy in Molecular Comprehensioncited by 19
  7. 2024ReactXT: Understanding Molecular "Reaction-ship" via Reaction-Contextualized Molecule-Text Pretrainingcited by 19
  8. 2025RAG-Enhanced Collaborative LLM Agents for Drug Discoverycited by 18
  9. 2024HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignmentcited by 17
  10. 2023Monte Carlo Thought Search: Large Language Model Querying for Complex Scientific Reasoning in Catalyst Designcited by 16
  11. 2024Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Surveycited by 16
  12. 2025Mol-LLaMA: Towards General Understanding of Molecules in Large Molecular Language Modelcited by 16
  13. 2024From Words to Molecules: A Survey of Large Language Models in Chemistrycited by 14
  14. 2024PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomescited by 14
  15. 2023SynerGPT: In-Context Learning for Personalized Drug Synergy Prediction and Drug Designcited by 13
  16. 2023Transformers and Large Language Models for Chemistry and Drug Discoverycited by 13
  17. 2023ReactionT5: a large-scale pre-trained model towards application of limited reaction datacited by 13
  18. 2024Regress, Don't Guess -- A Regression-like Loss on Number Tokens for Language Modelscited by 12
  19. 2023From Artificially Real to Real: Leveraging Pseudo Data from Large Language Models for Low-Resource Molecule Discoverycited by 11
  20. 2024Learning Multi-view Molecular Representations with Structured and Unstructured Knowledgecited by 11
  21. 2024From Generalist to Specialist: A Survey of Large Language Models for Chemistrycited by 11
  22. 2025Large language models as uncertainty-calibrated optimizers for experimental discoverycited by 10
  23. 2024Can LLMs Generate Diverse Molecules? Towards Alignment with Structural Diversitycited by 9
  24. 2025Enhancing Chemical Reaction and Retrosynthesis Prediction with Large Language Model and Dual-task Learningcited by 9
  25. 20243M-Diffusion: Latent Multi-Modal Diffusion for Language-Guided Molecular Structure Generationcited by 8
  26. 2025A Survey of AI for Materials Science: Foundation Models, LLM Agents, Datasets, and Toolscited by 7
  27. 2023Language models in molecular discoverycited by 6
  28. 2024MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Promptscited by 6
  29. 2025KnowMol: Advancing Molecular Large Language Models with Multi-Level Chemical Knowledgecited by 6
  30. 2024AlloyBERT: Alloy Property Prediction with Large Language Modelscited by 5
  31. 2024MolX: Enhancing Large Language Models for Molecular Understanding With A Multi-Modal Extensioncited by 5
  32. 2025Unified Cross-Scale 3D Generation and Understanding via Autoregressive Modelingcited by 5
  33. 2024Bridging Text and Molecule: A Survey on Multimodal Frameworks for Moleculecited by 4
  34. 2024Uncertainty-Guided Likelihood Tree Searchcited by 4
  35. 2025Improving Chemical Understanding of LLMs via SMILES Parsingcited by 4
  36. 2024Data-Efficient Molecular Generation with Hierarchical Textual Inversioncited by 3
  37. 2024ALMol: Aligned Language-Molecule Translation LLMs through Offline Preference Contrastive Optimisationcited by 3
  38. 2024DRAK: Unlocking Molecular Insights with Domain-Specific Retrieval-Augmented Knowledge in LLMscited by 3

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