mlsanityData to 14 Oct 2026

ALMol: Aligned Language-Molecule Translation LLMs through Offline Preference Contrastive Optimisation

arXiv 2405.08619 ↗First posted 14 May 2024cs.CL cs.MMcited by 3

On the map: LLM alignment / RLHF / preference optimisation → Preference optimization for molecular design

Abstract (arXiv)

The field of chemistry and Artificial Intelligence (AI) intersection is an area of active research that aims to accelerate scientific discovery. The integration of large language models (LLMs) with scientific modalities has shown significant promise in this endeavour. However, challenges persist in effectively addressing training efficacy and the out-of-distribution problem, particularly as existing approaches rely on larger models and datasets. In this context, we focus on machine language-molecule translation and deploy a novel training approach called contrastive preference optimisation, which avoids generating translations that are merely adequate but not perfect. To ensure generalisability and mitigate memorisation effects, we conduct experiments using only 10% of the data. Our results demonstrate that our models achieve up to a 32% improvement compared to counterpart models. Finally, we introduce a fine-grained, domain-agnostic evaluation method to assess hallucination in LLMs and promote responsible use.

Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Placed in Preference optimization for molecular design, one of 10 directions in LLM alignment / RLHF / preference optimisation. Builds on 14 of its 27 references that are in the map. First posted on arXiv 14 May 2024.

Builds on

14 of 27 references.

References · 14

  1. 2022Training language models to follow instructions with human feedbackcited by 15,971
  2. 2023Direct Preference Optimization: Your Language Model is Secretly a Reward Modelcited by 8,065
  3. 2023QLoRA: Efficient Finetuning of Quantized LLMscited by 3,418
  4. 2021DeBERTaV3: Improving DeBERTa using ELECTRA-Style Pre-Training with Gradient-Disentangled Embedding Sharingcited by 1,254
  5. 2024Contrastive Preference Optimization: Pushing the Boundaries of LLM Performance in Machine Translationcited by 394
  6. 2021QAFactEval: Improved QA-Based Factual Consistency Evaluation for Summarizationcited by 236
  7. 2022Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editingcited by 166
  8. 2023Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systemscited by 121
  9. 2023The Impact of Large Language Models on Scientific Discovery: a Preliminary Study using GPT-4cited by 112
  10. 2023Unifying Molecular and Textual Representations via Multi-task Language Modellingcited by 93
  11. 2023MolXPT: Wrapping Molecules with Text for Generative Pre-trainingcited by 81
  12. 2023MolFM: A Multimodal Molecular Foundation Modelcited by 50
2 more
  1. 2024L+M-24: Building a Dataset for Language + Molecules @ ACL 2024cited by 21
  2. 2024Balancing Enhancement, Harmlessness, and General Capabilities: Enhancing Conversational LLMs with Direct RLHFcited by 15

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Citing papers per year: 2024: 1; 2025: 2.

3 papers.

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Close in wording, no citation either way

  1. 2024A Review of Large Language Models and Autonomous Agents in Chemistry
  2. 2025LLMs for Bayesian Optimization in Scientific Domains: Are We There Yet?
  3. 2024A quantitative analysis of knowledge-learning preferences in large language models in molecular science
  4. 2025ChemMLLM: Chemical Multimodal Large Language Model
  5. 2025RLDBF: Enhancing LLMs Via Reinforcement Learning With DataBase FeedBack
  6. 2025Mol-LLM: Multimodal Generalist Molecular LLM with Improved Graph Utilization
  7. 2025ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model
  8. 2024SmileyLlama: Modifying Large Language Models for Directed Chemical Space Exploration