From Artificially Real to Real: Leveraging Pseudo Data from Large Language Models for Low-Resource Molecule Discovery
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Abstract (arXiv)
Molecule discovery serves as a cornerstone in numerous scientific domains, fueling the development of new materials and innovative drug designs. Recent developments of in-silico molecule discovery have highlighted the promising results of cross-modal techniques, which bridge molecular structures with their descriptive annotations. However, these cross-modal methods frequently encounter the issue of data scarcity, hampering their performance and application. In this paper, we address the low-resource challenge by utilizing artificially-real data generated by Large Language Models (LLMs). We first introduce a retrieval-based prompting strategy to construct high-quality pseudo data, then explore the optimal method to effectively leverage this pseudo data. Experiments show that using pseudo data for domain adaptation outperforms all existing methods, while also requiring a smaller model scale, reduced data size and lower training cost, highlighting its efficiency. Furthermore, our method shows a sustained improvement as the volume of pseudo data increases, revealing the great potential of pseudo data in advancing low-resource cross-modal molecule discovery. Our code and data are available at https://github.com/SCIR-HI/ArtificiallyR2R.
Key facts. Cited by 11 papers in the map (data through 14 Oct 2026). Builds on 26 of its 54 references that are in the map. First posted on arXiv 11 Sep 2023.
Builds on
26 of 54 references.
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14 more
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Built on by
Citing papers per year: 2023: 1; 2024: 7; 2025: 2; 2026: 1.
11 papers.
- 2024L+M-24: Building a Dataset for Language + Molecules @ ACL 2024cited by 21
- 2024Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Surveycited by 17
- 2024Geometry Informed Tokenization of Molecules for Language Model Generationcited by 10
- 2025KnowMol: Advancing Molecular Large Language Models with Multi-Level Chemical Knowledgecited by 7
- 2024MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Promptscited by 6
- 2024Bridging Text and Molecule: A Survey on Multimodal Frameworks for Moleculecited by 4
- 2024Large Language Models for Link Stealing Attacks Against Graph Neural Networkscited by 3
- 2023Make Your Decision Convincing! A Unified Two-Stage Framework: Self-Attribution and Decision-Makingcited by 1
- 2025Training Text-to-Molecule Models with Context-Aware Tokenizationcited by 1
- 2024Chemical Language Model Linker: blending text and molecules with modular adapterscited by 0
- 2026Resource-constrained Amazons chess decision framework integrating large language models and graph attentioncited by 0
- 2026Resource-constrained Amazons chess decision framework integrating large language models and graph attention11 Mar 2026
- 2025KnowMol: Advancing Molecular Large Language Models with Multi-Level Chemical Knowledge22 Oct 2025
- 2025Training Text-to-Molecule Models with Context-Aware Tokenization30 Aug 2025
- 2024Chemical Language Model Linker: blending text and molecules with modular adapters26 Oct 2024
- 2024Geometry Informed Tokenization of Molecules for Language Model Generation19 Aug 2024
- 2024Large Language Models for Link Stealing Attacks Against Graph Neural Networks22 Jun 2024
- 2024Bridging Text and Molecule: A Survey on Multimodal Frameworks for Molecule7 Mar 2024
- 2024Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey3 Mar 2024
- 2024L+M-24: Building a Dataset for Language + Molecules @ ACL 202422 Feb 2024
- 2024MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts21 Jan 2024
- 2023Make Your Decision Convincing! A Unified Two-Stage Framework: Self-Attribution and Decision-Making20 Oct 2023